15. ISMB / 6. ECCB 2007:
Vienna,
Austria (Supplement of Bioinformatics)
Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), Vienna, Austria, July 21-25, 2007.
2007 BibTeX
- ISMB/ECCB 2007.
1-4
Electronic Edition (link) BibTeX
- ISMB/ECCB 2007 Organization.
5-9
Electronic Edition (link) BibTeX
- Evrim Acar, Canan Aykut-Bingol, Haluk Bingol, Rasmus Bro, Bülent Yener:
Multiway analysis of epilepsy tensors.
10-18
Electronic Edition (link) BibTeX
- Mirela Andronescu, Anne Condon, Holger H. Hoos, David H. Mathews, Kevin P. Murphy:
Efficient parameter estimation for RNA secondary structure prediction.
19-28
Electronic Edition (link) BibTeX
- Sitaram Asur, Duygu Ucar, Srinivasan Parthasarathy:
An ensemble framework for clustering protein-protein interaction networks.
29-40
Electronic Edition (link) BibTeX
- William A. Baumgartner Jr., K. Bretonnel Cohen, Lynne M. Fox, George Acquaah-Mensah, Lawrence Hunter:
Manual curation is not sufficient for annotation of genomic databases.
41-48
Electronic Edition (link) BibTeX
- Tanya Y. Berger-Wolf, Saad I. Sheikh, Bhaskar DasGupta, Mary V. Ashley, Isabel C. Caballero, Wanpracha Art Chaovalitwongse, Satya Lahari Putrevu:
Reconstructing sibling relationships in wild populations.
49-56
Electronic Edition (link) BibTeX
- Kevin Bleakley, Gérard Biau, Jean-Philippe Vert:
Supervised reconstruction of biological networks with local models.
57-65
Electronic Edition (link) BibTeX
- Shann-Ching Chen, Ting Zhao, Geoffrey J. Gordon, Robert F. Murphy:
Automated image analysis of protein localization in budding yeast.
66-71
Electronic Edition (link) BibTeX
- Xiaoyu Chen, Timothy R. Hughes, Quaid Morris:
RankMotif++: a motif-search algorithm that accounts for relative ranks of K-mers in binding transcription factors.
72-79
Electronic Edition (link) BibTeX
- Ho-Ryun Chung, Dennis Kostka, Martin Vingron:
A physical model for tiling array analysis.
80-86
Electronic Edition (link) BibTeX
- Miklós Csürös, J. Andrew Holey, Igor B. Rogozin:
In search of lost introns.
87-96
Electronic Edition (link) BibTeX
- Xuefeng Cui, Tomás Vinar, Brona Brejová, Dennis Shasha, Ming Li:
Homology search for genes.
97-103
Electronic Edition (link) BibTeX
- Samuel A. Danziger, Jue Zeng, Ying Wang, Rainer K. Brachmann, Richard H. Lathrop:
Choosing where to look next in a mutation sequence space: Active Learning of informative p53 cancer rescue mutants.
104-114
Electronic Edition (link) BibTeX
- Gihan Dawelbait, Christof Winter, Yanju Zhang, Christian Pilarsky, Robert Grützmann, Jörg-Christian Heinrich, Michael Schroeder:
Structural templates predict novel protein interactions and targets from pancreas tumour gene expression data.
115-124
Electronic Edition (link) BibTeX
- Tijl De Bie, Léon-Charles Tranchevent, Liesbeth M. M. van Oeffelen, Yves Moreau:
Kernel-based data fusion for gene prioritization.
125-132
Electronic Edition (link) BibTeX
- Jeroen de Ridder, Jaap Kool, Anthony Uren, Jan Bot, Lodewyk F. A. Wessels, Marcel J. T. Reinders:
Co-occurrence analysis of insertional mutagenesis data reveals cooperating oncogenes.
133-141
Electronic Edition (link) BibTeX
- Charlotte M. Deane, Mingqiang Dong, Fabien P. E. Huard, Braddon K. Lance, Graham R. Wood:
Cotranslational protein folding - fact or fiction?
142-148
Electronic Edition (link) BibTeX
- Janusz Dutkowski, Jerzy Tiuryn:
Identification of functional modules from conserved ancestral protein-protein interactions.
149-158
Electronic Edition (link) BibTeX
- Matthew D. Dyer, T. M. Murali, Bruno W. S. Sobral:
Computational prediction of host-pathogen protein-protein interactions.
159-166
Electronic Edition (link) BibTeX
- Jesús K. Estrada-Gil, Juan C. Fernández-López, Enrique Hernández-Lemus, Irma Silva-Zolezzi, Alfredo Hidalgo-Miranda, Gerardo Jiménez-Sánchez, Edgar E. Vallejo-Clemente:
GPDTI: A Genetic Programming Decision Tree Induction method to find epistatic effects in common complex diseases.
167-174
Electronic Edition (link) BibTeX
- Eran Eyal, Chakra Chennubhotla, Lee-Wei Yang, Ivet Bahar:
Anisotropic fluctuations of amino acids in protein structures: insights from X-ray crystallography and elastic network models.
175-184
Electronic Edition (link) BibTeX
- Ivelin Georgiev, Bruce Randall Donald:
Dead-End Elimination with Backbone Flexibility.
185-194
Electronic Edition (link) BibTeX
- Stefan Gräf, Fiona G. G. Nielsen, Stefan Kurtz, Martijn A. Huynen, Ewan Birney, Henk Stunnenberg, Paul Flicek:
Optimized design and assessment of whole genome tiling arrays.
195-204
Electronic Edition (link) BibTeX
- Michelle L. Green, Peter D. Karp:
Using genome-context data to identify specific types of functional associations in pathway/genome databases.
205-211
Electronic Edition (link) BibTeX
- Jim C. Huang, Anitha Kannan, John M. Winn:
Bayesian association of haplotypes and non-genetic factors to regulatory and phenotypic variation in human populations.
212-221
Electronic Edition (link) BibTeX
- Yu Huang, Haifeng Li, Haiyan Hu, Xifeng Yan, Michael S. Waterman, Haiyan Huang, Xianghong Jasmine Zhou:
Systematic discovery of functional modules and context-specific functional annotation of human genome.
222-229
Electronic Edition (link) BibTeX
- Wataru Iwasaki, Toshihisa Takagi:
Reconstruction of highly heterogeneous gene-content evolution across the three domains of life.
230-239
Electronic Edition (link) BibTeX
- Etai Jacob, Amnon Horovitz, Ron Unger:
Different mechanistic requirements for prokaryotic and eukaryotic chaperonins: a lattice study.
240-248
Electronic Edition (link) BibTeX
- Miriam R. Kantorovitz, Gene E. Robinson, Saurabh Sinha:
A statistical method for alignment-free comparison of regulatory sequences.
249-255
Electronic Edition (link) BibTeX
- Jee-Hyub Kim, Alex Mitchell, Teresa K. Attwood, Melanie Hilario:
Learning to extract relations for protein annotation.
256-263
Electronic Edition (link) BibTeX
- Corinna Kolárik, Martin Hofmann-Apitius, Marc Zimmermann, Juliane Fluck:
Identification of new drug classification terms in textual resources.
264-272
Electronic Edition (link) BibTeX
- Eva Lange, Clemens Gröpl, Ole Schulz-Trieglaff, Andreas Leinenbach, Christian G. Huber, Knut Reinert:
A geometric approach for the alignment of liquid chromatography - mass spectrometry data.
273-281
Electronic Edition (link) BibTeX
- Wei Keat Lim, Kai Wang, Céline Lefebvre, Andrea Califano:
Comparative analysis of microarray normalization procedures: effects on reverse engineering gene networks.
282-288
Electronic Edition (link) BibTeX
- Gerton Lunter:
Probabilistic whole-genome alignments reveal high indel rates in the human and mouse genomes.
289-296
Electronic Edition (link) BibTeX
- Shaun Mahony, Philip E. Auron, Panayiotis V. Benos:
Inferring protein-DNA dependencies using motif alignments and mutual information.
297-304
Electronic Edition (link) BibTeX
- Florian Markowetz, Dennis Kostka, Olga G. Troyanskaya, Rainer Spang:
Nested effects models for high-dimensional phenotyping screens.
305-312
Electronic Edition (link) BibTeX
- Tristan Mary-Huard, Jean-Jacques Daudin, Michela Baccini, Annibale Biggeri, Avner Bar-Hen:
Biases induced by pooling samples in microarray experiments.
313-318
Electronic Edition (link) BibTeX
- Itay Mayrose, Adi Doron-Faigenboim, Eran Bacharach, Tal Pupko:
Towards realistic codon models: among site variability and dependency of synonymous and non-synonymous rates.
319-327
Electronic Edition (link) BibTeX
- Sean McIlwain, David Page, Edward L. Huttlin, Michael R. Sussman:
Using dynamic programming to create isotopic distribution maps from mass spectra.
328-336
Electronic Edition (link) BibTeX
- Chris Mungall, David B. Emmert:
A Chado case study: an ontology-based modular schema for representing genome-associated biological information.
337-346
Electronic Edition (link) BibTeX
- Yanay Ofran, Venkatesh Mysore, Burkhard Rost:
Prediction of DNA-binding residues from sequence.
347-353
Electronic Edition (link) BibTeX
- Jung Hun Ohn, Jihun Kim, Ju Han Kim:
Genomic characterization of perturbation sensitivity.
354-358
Electronic Edition (link) BibTeX
- Oved Ourfali, Tomer Shlomi, Trey Ideker, Eytan Ruppin, Roded Sharan:
SPINE: a framework for signaling-regulatory pathway inference from cause-effect experiments.
359-366
Electronic Edition (link) BibTeX
- Yue Pan, Tim Durfee, Joseph Bockhorst, Mark Craven:
Connecting quantitative regulatory-network models to the genome.
367-376
Electronic Edition (link) BibTeX
- Jayesh Pandey, Mehmet Koyutürk, Yohan Kim, Wojciech Szpankowski, Shankar Subramaniam, Ananth Grama:
Functional annotation of regulatory pathways.
377-386
Electronic Edition (link) BibTeX
- Frank Panitz, Henrik Stengaard, Henrik Hornshøj, Jan Gorodkin, Jakob Hedegaard, Susanna Cirera, Bo Thomsen, Lone B. Madsen, Anette Høj, Rikke K. Vingborg, Bujie Zahn, Xuegang Wang, Xuefei Wang, Rasmus Wernersson, Claus B. Jørgensen, Karsten Scheibye-Knudsen, Troels Arvin, Steen Lumholdt, Milena Sawera, Trine Green, Bente J. Nielsen, Jakob Hull Havgaard, Søren Brunak, Merete Fredholm, Christian Bendixen:
SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation.
387-391
Electronic Edition (link) BibTeX
- Janina Reeder, Jens Reeder, Robert Giegerich:
Locomotif: from graphical motif description to RNA motif search.
392-400
Electronic Edition (link) BibTeX
- Adam Roberts, Leonard McMillan, Wei Wang, Joel Parker, Ivan Rusyn, David Threadgill:
Inferring missing genotypes in large SNP panels using fast nearest-neighbor searches over sliding windows.
401-407
Electronic Edition (link) BibTeX
- Romain Rossi, Mathieu Isorce, Sandy Morin, Julien Flocard, Karthik Arumugam, Serge Crouzy, Michel Vivaudou, Stephane Redon:
Adaptive torsion-angle quasi-statics: a general simulation method with applications to protein structure analysis and design.
408-417
Electronic Edition (link) BibTeX
- Yvan Saeys, Thomas Abeel, Sven Degroeve, Yves Van de Peer:
Translation initiation site prediction on a genomic scale: beauty in simplicity.
418-423
Electronic Edition (link) BibTeX
- Olivia Sanchez-Graillet, Massimo Poesio:
Negation of protein-protein interactions: analysis and extraction.
424-432
Electronic Edition (link) BibTeX
- David Sankoff, Chunfang Zheng, Qian Zhu:
Polyploids, genome halving and phylogeny.
433-439
Electronic Edition (link) BibTeX
- Liat Segal, Michal Lapidot, Zach Solan, Eytan Ruppin, Yitzhak Pilpel, David Horn:
Nucleotide variation of regulatory motifs may lead to distinct expression patterns.
440-449
Electronic Edition (link) BibTeX
- Sohrab P. Shah, Wan L. Lam, Raymond T. Ng, Kevin P. Murphy:
Modeling recurrent DNA copy number alterations in array CGH data.
450-458
Electronic Edition (link) BibTeX
- Yanxin Shi, Michael Klustein, Itamar Simon, Tom Mitchell, Ziv Bar-Joseph:
Continuous hidden process model for time series expression experiments.
459-467
Electronic Edition (link) BibTeX
- Motoki Shiga, Ichigaku Takigawa, Hiroshi Mamitsuka:
Annotating gene function by combining expression data with a modular gene network.
468-478
Electronic Edition (link) BibTeX
- Kyung-Ah Sohn, Eric P. Xing:
Spectrum: joint bayesian inference of population structure and recombination events.
479-489
Electronic Edition (link) BibTeX
- Le Song, Justin Bedo, Karsten M. Borgwardt, Arthur Gretton, Alexander J. Smola:
Gene selection via the BAHSIC family of algorithms.
490-498
Electronic Edition (link) BibTeX
- Xiaoyun Sun, Pengyu Hong:
Computational modeling of Caenorhabditis elegans vulval induction.
499-507
Electronic Edition (link) BibTeX
- Suman Sundaresh, Arlo Z. Randall, Berkay Unal, Jeannine M. Petersen, John T. Belisle, M. Gill Hartley, Melanie Duffield, Richard W. Titball, D. Huw Davies, Philip L. Felgner, Pierre Baldi:
From protein microarrays to diagnostic antigen discovery: a study of the pathogen Francisella tularensis.
508-518
Electronic Edition (link) BibTeX
- Marko Sysi-Aho, Aki Vehtari, Vidya R. Velagapudi, Jukka Westerbacka, Laxman Yetukuri, Robert Bergholm, Marja-Riitta Taskinen, Hannele Yki-Järvinen, Matej Oresic:
Exploring the lipoprotein composition using Bayesian regression on serum lipidomic profiles.
519-528
Electronic Edition (link) BibTeX
- Ying Tao, Lee Sam, Jianrong Li, Carol Friedman, Yves A. Lussier:
Information theory applied to the sparse gene ontology annotation network to predict novel gene function.
529-538
Electronic Edition (link) BibTeX
- Lydia Tapia, Xinyu Tang, Shawna L. Thomas, Nancy M. Amato:
Kinetics analysis methods for approximate folding landscapes.
539-548
Electronic Edition (link) BibTeX
- Ilan Wapinski, Avi Pfeffer, Nir Friedman, Aviv Regev:
Automatic genome-wide reconstruction of phylogenetic gene trees.
549-558
Electronic Edition (link) BibTeX
- Travis J. Wheeler, John D. Kececioglu:
Multiple alignment by aligning alignments.
559-568
Electronic Edition (link) BibTeX
- Song Wu, Jie Yang, Rongling Wu:
Semiparametric functional mapping of quantitative trait loci governing long-term HIV dynamics.
569-576
Electronic Edition (link) BibTeX
- Xifeng Yan, Michael R. Mehan, Yu Huang, Michael S. Waterman, Philip S. Yu, Xianghong Jasmine Zhou:
A graph-based approach to systematically reconstruct human transcriptional regulatory modules.
577-586
Electronic Edition (link) BibTeX
Copyright © Sat May 16 23:25:47 2009
by Michael Ley (ley@uni-trier.de)
