Trey Ideker

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20EERyan M. Kelley, Hoda Feizi, Trey Ideker: Correcting for gene-specific dye bias in DNA microarrays using the method of maximum likelihood. Bioinformatics 24(1): 71-77 (2008)
19EEMaxim Kalaev, Mike Smoot, Trey Ideker, Roded Sharan: NetworkBLAST: comparative analysis of protein networks. Bioinformatics 24(4): 594-596 (2008)
18 Trey Ideker, Vineet Bafna: Systems Biology and Computational Proteomics, Joint RECOMB 2006 Satellite Workshops on Systems Biology and on Computational Proteomics, San Diego, CA, USA, December 1-3, 2006, Revised Selected Papers Springer 2007
17EEOved Ourfali, Tomer Shlomi, Trey Ideker, Eytan Ruppin, Roded Sharan: SPINE: a framework for signaling-regulatory pathway inference from cause-effect experiments. ISMB/ECCB (Supplement of Bioinformatics) 2007: 359-366
16EEH. Craig Mak, Mike Daly, Bianca Gruebel, Trey Ideker: CellCircuits: a database of protein network models. Nucleic Acids Research 35(Database-Issue): 538-545 (2007)
15 Eleazar Eskin, Trey Ideker, Benjamin J. Raphael, Christopher T. Workman: Systems Biology and Regulatory Genomics, Joint Annual RECOMB 2005 Satellite Workshops on Systems Biology and on Regulatory Genomics, San Diego, CA, USA; December 2-4, 2005, Revised Selected Papers Springer 2006
14EESourav Bandyopadhyay, Ryan M. Kelley, Trey Ideker: Discovering Regulated Networks During HIV-1 Latency and Reactivation. Pacific Symposium on Biocomputing 2006: 354-366
13EETrey Ideker, Alfonso Valencia: Bioinformatics in the human interactome project. Bioinformatics 22(24): 2973-2974 (2006)
12EEJacob Scott, Trey Ideker, Richard M. Karp, Roded Sharan: Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks. Journal of Computational Biology 13(2): 133-144 (2006)
11EEJacob Scott, Trey Ideker, Richard M. Karp, Roded Sharan: Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks. RECOMB 2005: 1-13
10EESilpa Suthram, Tomer Shlomi, Eytan Ruppin, Roded Sharan, Trey Ideker: Comparison of Protein-Protein Interaction Confidence Assignment Schemes. Systems Biology and Regulatory Genomics 2005: 39-50
9EERoded Sharan, Trey Ideker, Brian P. Kelley, Ron Shamir, Richard M. Karp: Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data. Journal of Computational Biology 12(6): 835-846 (2005)
8EEChristopher T. Workman, Yutong Yin, David L. Corcoran, Trey Ideker, Gary D. Stormo, Panayiotis V. Benos: enoLOGOS: a versatile web tool for energy normalized sequence logos. Nucleic Acids Research 33(Web-Server-Issue): 389-392 (2005)
7EEAlbert Hsiao, Trey Ideker, Jerrold M. Olefsky, Shankar Subramaniam: VAMPIRE microarray suite: a web-based platform for the interpretation of gene expression data. Nucleic Acids Research 33(Web-Server-Issue): 627-632 (2005)
6EETrey Ideker, Erik K. Neumann, Vincent Schächter: Session Introduction. Pacific Symposium on Biocomputing 2004: 471-473
5EERoded Sharan, Trey Ideker, Brian P. Kelley, Ron Shamir, Richard M. Karp: Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data. RECOMB 2004: 282-289
4EEChen-Hsiang Yeang, Trey Ideker, Tommi Jaakkola: Physical Network Models. Journal of Computational Biology 11(2/3): 243-262 (2004)
3 Brian P. Kelley, Bingbing Yuan, Fran Lewitter, Roded Sharan, Brent R. Stockwell, Trey Ideker: PathBLAST: a tool for alignment of protein interaction networks. Nucleic Acids Research 32(Web-Server-Issue): 83-88 (2004)
2 Trey Ideker, Owen Ozier, Benno Schwikowski, Andrew F. Siegel: Discovering regulatory and signalling circuits in molecular interaction networks. ISMB 2002: 233-240
1 Trey Ideker, Vesteinn Thorsson, Andrew F. Siegel, Leroy E. Hood: Testing for Differentially-Expressed Genes by Maximum-Likelihood Analysis of Microarray Data. Journal of Computational Biology 7(6): 805-817 (2000)

Coauthor Index

1Vineet Bafna [18]
2Sourav Bandyopadhyay [14]
3Panayiotis V. Benos [8]
4David L. Corcoran [8]
5Mike Daly [16]
6Eleazar Eskin [15]
7Hoda Feizi [20]
8Bianca Gruebel [16]
9Leroy E. Hood [1]
10Albert Hsiao [7]
11Tommi Jaakkola [4]
12Maxim Kalaev [19]
13Richard M. Karp [5] [9] [11] [12]
14Brian P. Kelley [3] [5] [9]
15Ryan M. Kelley [14] [20]
16Fran Lewitter [3]
17H. Craig Mak [16]
18Erik K. Neumann [6]
19Jerrold M. Olefsky [7]
20Oved Ourfali [17]
21Owen Ozier [2]
22Benjamin J. Raphael [15]
23Eytan Ruppin [10] [17]
24Vincent Schächter [6]
25Benno Schwikowski [2]
26Jacob Scott [11] [12]
27Ron Shamir [5] [9]
28Roded Sharan [3] [5] [9] [10] [11] [12] [17] [19]
29Tomer Shlomi [10] [17]
30Andrew F. Siegel [1] [2]
31Mike Smoot [19]
32Brent R. Stockwell [3]
33Gary D. Stormo [8]
34Shankar Subramaniam [7]
35Silpa Suthram [10]
36Vesteinn Thorsson [1]
37Alfonso Valencia [13]
38Christopher T. Workman [8] [15]
39Chen-Hsiang Yeang [4]
40Yutong Yin [8]
41Bingbing Yuan [3]

Colors in the list of coauthors

Copyright © Sun May 17 03:24:02 2009 by Michael Ley (ley@uni-trier.de)