2008 |
39 | EE | Fantine Mordelet,
Jean-Philippe Vert:
SIRENE: supervised inference of regulatory networks.
ECCB 2008: 76-82 |
38 | EE | Mikhail Zaslavskiy,
Francis Bach,
Jean-Philippe Vert:
A Path Following Algorithm for Graph Matching.
ICISP 2008: 329-337 |
37 | EE | Franck Rapaport,
Emmanuel Barillot,
Jean-Philippe Vert:
Classification of arrayCGH data using fused SVM.
ISMB 2008: 375-382 |
36 | EE | Laurent Jacob,
Francis Bach,
Jean-Philippe Vert:
Clustered Multi-Task Learning: A Convex Formulation.
NIPS 2008: 745-752 |
35 | EE | Laurent Jacob,
Jean-Philippe Vert:
Protein-ligand interaction prediction: an improved chemogenomics approach.
Bioinformatics 24(19): 2149-2156 (2008) |
34 | EE | Laurent Jacob,
Jean-Philippe Vert:
Efficient peptide-MHC-I binding prediction for alleles with few known binders.
Bioinformatics 24(3): 358-366 (2008) |
33 | EE | Mikhail Zaslavskiy,
Francis Bach,
Jean-Philippe Vert:
Path following algorithm for the graph matching problem
CoRR abs/0801.3654: (2008) |
32 | EE | Jean-Philippe Vert:
The optimal assignment kernel is not positive definite
CoRR abs/0801.4061: (2008) |
31 | EE | Francis Bach,
Jacob Abernethy,
Jean-Philippe Vert,
Theodoros Evgeniou:
A New Approach to Collaborative Filtering: Operator Estimation with Spectral Regularization
CoRR abs/0802.1430: (2008) |
30 | EE | Laurent Jacob,
Francis Bach,
Jean-Philippe Vert:
Clustered Multi-Task Learning: A Convex Formulation
CoRR abs/0809.2085: (2008) |
29 | EE | Jacob Abernethy,
Theodoros Evgeniou,
Olivier Toubia,
Jean-Philippe Vert:
Eliciting Consumer Preferences Using Robust Adaptive Choice Questionnaires.
IEEE Trans. Knowl. Data Eng. 20(2): 145-155 (2008) |
2007 |
28 | EE | Kevin Bleakley,
Gérard Biau,
Jean-Philippe Vert:
Supervised reconstruction of biological networks with local models.
ISMB/ECCB (Supplement of Bioinformatics) 2007: 57-65 |
27 | EE | Yoshihiro Yamanishi,
Francis Bach,
Jean-Philippe Vert:
Glycan classification with tree kernels.
Bioinformatics 23(10): 1211-1216 (2007) |
26 | EE | Jian Qiu,
Martial Hue,
Asa Ben-Hur,
Jean-Philippe Vert,
William Stafford Noble:
A structural alignment kernel for protein structures.
Bioinformatics 23(9): 1090-1098 (2007) |
25 | EE | Pierre Mahé,
Jean-Philippe Vert:
Virtual screening with support vector machines and structure kernels
CoRR abs/0708.0171: (2007) |
2006 |
24 | EE | Jean-Philippe Vert:
Classification of Biological Sequences with Kernel Methods.
ICGI 2006: 7-18 |
23 | EE | Hiroto Saigo,
Jean-Philippe Vert,
Tatsuya Akutsu:
Optimizing amino acid substitution matrices with a local alignment kernel.
BMC Bioinformatics 7: 246 (2006) |
22 | EE | Marco Cuturi,
Jean-Philippe Vert,
Oystein Birkenes,
Tomoko Matsui:
A kernel for time series based on global alignments
CoRR abs/cs/0610033: (2006) |
21 | EE | Jacob Abernethy,
Francis Bach,
Theodoros Evgeniou,
Jean-Philippe Vert:
Low-rank matrix factorization with attributes
CoRR abs/cs/0611124: (2006) |
20 | EE | Jean-Philippe Vert,
Jian Qiu,
William Stafford Noble:
Metric learning pairwise kernel for graph inference
CoRR abs/q-bio/0610040: (2006) |
19 | EE | Régis Vert,
Jean-Philippe Vert:
Consistency and Convergence Rates of One-Class SVMs and Related Algorithms.
Journal of Machine Learning Research 7: 817-854 (2006) |
2005 |
18 | EE | Yoshihiro Yamanishi,
Jean-Philippe Vert,
Minoru Kanehisa:
Supervised enzyme network inference from the integration of genomic data and chemical information.
ISMB (Supplement of Bioinformatics) 2005: 468-477 |
17 | EE | Régis Vert,
Jean-Philippe Vert:
Consistency of one-class SVM and related algorithms.
NIPS 2005 |
16 | EE | Jean-Philippe Vert,
Robert Thurman,
William Stafford Noble:
Kernels for gene regulatory regions.
NIPS 2005 |
15 | EE | Pierre Mahé,
Nobuhisa Ueda,
Tatsuya Akutsu,
Jean-Luc Perret,
Jean-Philippe Vert:
Graph Kernels for Molecular Structure-Activity Relationship Analysis with Support Vector Machines.
Journal of Chemical Information and Modeling 45(4): 939-951 (2005) |
14 | EE | Marco Cuturi,
Kenji Fukumizu,
Jean-Philippe Vert:
Semigroup Kernels on Measures.
Journal of Machine Learning Research 6: 1169-1198 (2005) |
13 | EE | Marco Cuturi,
Jean-Philippe Vert:
The context-tree kernel for strings.
Neural Networks 18(8): 1111-1123 (2005) |
2004 |
12 | EE | Pierre Mahé,
Nobuhisa Ueda,
Tatsuya Akutsu,
Jean-Luc Perret,
Jean-Philippe Vert:
Extensions of marginalized graph kernels.
ICML 2004 |
11 | EE | Yoshihiro Yamanishi,
Jean-Philippe Vert,
Minoru Kanehisa:
Protein network inference from multiple genomic data: a supervised approach.
ISMB/ECCB (Supplement of Bioinformatics) 2004: 363-370 |
10 | EE | Marco Cuturi,
Jean-Philippe Vert:
Semigroup Kernels on Finite Sets.
NIPS 2004 |
9 | EE | Jean-Philippe Vert,
Yoshihiro Yamanishi:
Supervised Graph Inference.
NIPS 2004 |
8 | EE | Hiroto Saigo,
Jean-Philippe Vert,
Nobuhisa Ueda,
Tatsuya Akutsu:
Protein homology detection using string alignment kernels.
Bioinformatics 20(11): 1682-1689 (2004) |
2003 |
7 | | Jean-Philippe Vert,
Minoru Kanehisa:
Extracting active pathways from gene expression data.
ECCB 2003: 238-244 |
6 | EE | Yoshihiro Yamanishi,
Jean-Philippe Vert,
A. Nakaya,
Minoru Kanehisa:
Extraction of correlated gene clusters from multiple genomic data by generalized kernel canonical correlation analysis.
ISMB (Supplement of Bioinformatics) 2003: 323-330 |
2002 |
5 | | Jean-Philippe Vert:
A tree kernel to analyse phylogenetic profiles.
ISMB 2002: 276-284 |
4 | EE | Jean-Philippe Vert,
Minoru Kanehisa:
Graph-Driven Feature Extraction From Microarray Data Using Diffusion Kernels and Kernel CCA.
NIPS 2002: 1425-1432 |
3 | EE | Jean-Philippe Vert:
Support Vector Machine Prediction of Signal Peptide Cleavage Site Using a New Class of Kernels for Strings.
Pacific Symposium on Biocomputing 2002: 649-660 |
2001 |
2 | EE | Jean-Philippe Vert:
Text Categorization Using Adaptive Context Trees.
CICLing 2001: 423-436 |
1 | | Jean-Philippe Vert:
Adaptive context trees and text clustering.
IEEE Transactions on Information Theory 47(5): 1884-1901 (2001) |