2008 |
45 | EE | Michael R. Mehan,
Juan Nunez-Iglesias,
Mrinal Kalakrishnan,
Michael S. Waterman,
Xianghong Jasmine Zhou:
An Integrative Network Approach to Map the Transcriptome to the Phenome.
RECOMB 2008: 232-245 |
2007 |
44 | EE | Yu Huang,
Haifeng Li,
Haiyan Hu,
Xifeng Yan,
Michael S. Waterman,
Haiyan Huang,
Xianghong Jasmine Zhou:
Systematic discovery of functional modules and context-specific functional annotation of human genome.
ISMB/ECCB (Supplement of Bioinformatics) 2007: 222-229 |
43 | EE | Xifeng Yan,
Michael R. Mehan,
Yu Huang,
Michael S. Waterman,
Philip S. Yu,
Xianghong Jasmine Zhou:
A graph-based approach to systematically reconstruct human transcriptional regulatory modules.
ISMB/ECCB (Supplement of Bioinformatics) 2007: 577-586 |
42 | EE | Gesine Reinert,
Michael S. Waterman:
On the Length of the Longest Exact Position Match in a Random Sequence.
IEEE/ACM Trans. Comput. Biology Bioinform. 4(1): 153-156 (2007) |
41 | EE | Jong Hyun Kim,
Michael S. Waterman,
Lei M. Li:
Accuracy Assessment of Diploid Consensus Sequences.
IEEE/ACM Trans. Comput. Biology Bioinform. 4(1): 88-97 (2007) |
40 | EE | Haifeng Li,
Anton Valouev,
David C. Schwartz,
Michael S. Waterman,
Lei M. Li:
A Quantile Method for Sizing Optical Maps.
Journal of Computational Biology 14(3): 255-266 (2007) |
39 | EE | Fei Pan,
Chi-Hsien Chiu,
Sudip Pulapura,
Michael R. Mehan,
Juan Nunez-Iglesias,
Kangyu Zhang,
Kiran Kamath,
Michael S. Waterman,
Caleb E. Finch,
Xianghong Jasmine Zhou:
Gene Aging Nexus: a web database and data mining platform for microarray data on aging.
Nucleic Acids Research 35(Database-Issue): 756-759 (2007) |
2006 |
38 | | Alberto Apostolico,
Concettina Guerra,
Sorin Istrail,
Pavel A. Pevzner,
Michael S. Waterman:
Research in Computational Molecular Biology, 10th Annual International Conference, RECOMB 2006, Venice, Italy, April 2-5, 2006, Proceedings
Springer 2006 |
37 | EE | Michael S. Waterman:
Whole Genome Optical Mapping.
APBC 2006: 5 |
36 | EE | Michael S. Waterman:
Stan Ulam and Computational Biology.
RECOMB 2006: 159-159 |
35 | EE | Anton Valouev,
Yu Zhang,
David C. Schwartz,
Michael S. Waterman:
Refinement of optical map assemblies.
Bioinformatics 22(10): 1217-1224 (2006) |
34 | EE | Anton Valouev,
Lei Li,
Yu-Chi Liu,
David C. Schwartz,
Yi Yang,
Yu Zhang,
Michael S. Waterman:
Alignment of Optical Maps.
Journal of Computational Biology 13(2): 442-462 (2006) |
2005 |
33 | | Satoru Miyano,
Jill P. Mesirov,
Simon Kasif,
Sorin Istrail,
Pavel A. Pevzner,
Michael S. Waterman:
Research in Computational Molecular Biology, 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings
Springer 2005 |
32 | EE | Anton Valouev,
Lei Li,
Yu-Chi Liu,
David C. Schwartz,
Yi Yang,
Yu Zhang,
Michael S. Waterman:
Alignment of Optical Maps.
RECOMB 2005: 489-504 |
31 | EE | Kui Zhang,
Zhaohui S. Qin,
Ting Chen,
Jun S. Liu,
Michael S. Waterman,
Fengzhu Sun:
HapBlock: haplotype block partitioning and tag SNP selection software using a set of dynamic programming algorithms.
Bioinformatics 21(1): 131-134 (2005) |
2004 |
30 | | Sorin Istrail,
Michael S. Waterman,
Andrew G. Clark:
Computational Methods for SNPs and Haplotype Inference, DIMACS/RECOMB Satellite Workshop, Piscataway, NJ, USA, November 21-22, 2002, Revised Papers
Springer 2004 |
29 | EE | Lei M. Li,
Jong Hyun Kim,
Michael S. Waterman:
Haplotype Reconstruction from SNP Alignment.
Journal of Computational Biology 11(2/3): 505-516 (2004) |
2003 |
28 | EE | Michael S. Waterman,
Yu Zhang:
Eulerian Path Methods for Multiple Sequence Alignment.
CSB 2003: 29 |
27 | EE | Lei Li,
Jong Hyun Kim,
Michael S. Waterman:
Haplotype reconstruction from SNP alignment.
RECOMB 2003: 207-216 |
26 | EE | Kui Zhang,
Fengzhu Sun,
Michael S. Waterman,
Ting Chen:
Dynamic programming algorithms for haplotype block partitioning: applications to human chromosome 21 haplotype data.
RECOMB 2003: 332-340 |
25 | EE | Yu Zhang,
Michael S. Waterman:
An Eulerian Path Approach to Global Multiple Alignment for DNA Sequences.
Journal of Computational Biology 10(6): 803-819 (2003) |
2002 |
24 | EE | Kui Zhang,
Ting Chen,
Michael S. Waterman,
Zhaohui S. Qin,
Jun S. Liu,
Fengzhu Sun:
Dynamic Programming Algorithms for Haplotype Block Partitioning and Tag SNP Selection Using Haplotype Data or Genotype Data.
Computational Methods for SNPs and Haplotype Inference 2002: 96-112 |
23 | | Mengxiang Tang,
Michael S. Waterman,
Shibu Yooseph:
Zinc Finger Gene Clusters and Tandem Gene Duplication.
Journal of Computational Biology 9(2): 429-446 (2002) |
2001 |
22 | EE | Pavel A. Pevzner,
Haixu Tang,
Michael S. Waterman:
A new approach to fragment assembly in DNA sequencing.
RECOMB 2001: 256-267 |
21 | EE | Mengxiang Tang,
Michael S. Waterman,
Shibu Yooseph:
Zinc finger gene clusters and tandem gene duplication.
RECOMB 2001: 297-304 |
2000 |
20 | | Gesine Reinert,
Sophie Schbath,
Michael S. Waterman:
Probabilistic and Statistical Properties of Words: An Overview.
Journal of Computational Biology 7(1-2): 1-46 (2000) |
1998 |
19 | EE | Jae Kyu Lee,
Vlado Dancík,
Michael S. Waterman:
Estimation for restriction sites observed by optical mapping using reversible-jump Markov chain Monte Carlo.
RECOMB 1998: 147-152 |
18 | | Jae Kyu Lee,
Vlado Dancík,
Michael S. Waterman:
Estimation for Restriction Sites Observed by Optical Mapping Using Reversible-Jump Markov Chain Monte Carlo
Journal of Computational Biology 5(3): 505-516 (1998) |
1997 |
17 | EE | George A. Komatsoulis,
Michael S. Waterman:
Chimeric alignment by dynamic programming: algorithm and biological uses.
RECOMB 1997: 174-180 |
16 | EE | Fengzhu Sun,
Gary Benson,
Norman Arnheim,
Michael S. Waterman:
Pooling strategies for establishing physical genome maps using FISH.
RECOMB 1997: 294-299 |
15 | | Michael S. Waterman,
Sorin Istrail,
Pavel A. Pevzner:
Selected Papers from RECOMB'97 - Preface.
Journal of Computational Biology 4(3): 215-216 (1997) |
14 | | Fengzhu Sun,
Gary Benson,
Norman Arnheim,
Michael S. Waterman:
Pooling Strategies for Establishing Physical Genome Maps Using FISH.
Journal of Computational Biology 4(4): 467-486 (1997) |
1996 |
13 | EE | Martin Vingron,
Michael S. Waterman:
Alignment Networks and Electrical Networks.
Discrete Applied Mathematics 71(1-3): 297-309 (1996) |
12 | | Richard Arratia,
D. Martin,
Gesine Reinert,
Michael S. Waterman:
Poisson Process Approximation for Sequence Repeats and Sequencing by Hybridization.
Journal of Computational Biology 3(3): 425 (1996) |
1995 |
11 | | Pavel A. Pevzner,
Michael S. Waterman:
Open Combinatorial Problems in Computational Molecular Biology.
ISTCS 1995: 158-173 |
10 | | Pavel A. Pevzner,
Michael S. Waterman:
Multiple Filtration and Approximate Pattern Matching.
Algorithmica 13(1/2): 135-154 (1995) |
9 | | Ramana M. Idury,
Michael S. Waterman:
A New Algorithm for DNA Sequence Assembly.
Journal of Computational Biology 2(2): 291-306 (1995) |
1994 |
8 | EE | William R. Schmitt,
Michael S. Waterman:
Linear Trees and RNA Secondary Structure.
Discrete Applied Mathematics 51(3): 317-323 (1994) |
1993 |
7 | | Pavel A. Pevzner,
Michael S. Waterman:
A Fast Filtration Algorithm for the Substring Matching Problem.
CPM 1993: 197-214 |
6 | | Michael S. Waterman:
Sequence Comparison and Statistical Significance in Molecular Biology (Abstract).
ESA 1993: 396 |
1992 |
5 | | Pavel A. Pevzner,
Michael S. Waterman:
Matrix Longest Common Subsequence Problem, Duality and Hibert Bases.
CPM 1992: 79-89 |
4 | | X. Huang,
Michael S. Waterman:
Dynamic programming algorithms for restriction map comparison.
Computer Applications in the Biosciences 8(5): 511-520 (1992) |
1991 |
3 | EE | E. T. Chow,
J. C. Peterson,
Michael S. Waterman,
Tim Hunkapiller,
B. A. Zimmermann:
A systolic array processor for biological information signal processing.
ICS 1991: 216-223 |
1984 |
2 | | David J. Lipman,
W. John Wilbur,
Temple F. Smith,
Michael S. Waterman:
On the statistical significance of nucleic acid similarities.
Nucleic Acids Research 12(1): 215-226 (1984) |
1 | | Michael S. Waterman,
Temple F. Smith,
H. L. Katcher:
Algorithms for restriction map comparisons.
Nucleic Acids Research 12(1): 237-242 (1984) |