Michael S. Waterman

2008
45	EE	Michael R. Mehan, Juan Nunez-Iglesias, Mrinal Kalakrishnan, Michael S. Waterman, Xianghong Jasmine Zhou: An Integrative Network Approach to Map the Transcriptome to the Phenome. RECOMB 2008: 232-245
2007
44	EE	Yu Huang, Haifeng Li, Haiyan Hu, Xifeng Yan, Michael S. Waterman, Haiyan Huang, Xianghong Jasmine Zhou: Systematic discovery of functional modules and context-specific functional annotation of human genome. ISMB/ECCB (Supplement of Bioinformatics) 2007: 222-229
43	EE	Xifeng Yan, Michael R. Mehan, Yu Huang, Michael S. Waterman, Philip S. Yu, Xianghong Jasmine Zhou: A graph-based approach to systematically reconstruct human transcriptional regulatory modules. ISMB/ECCB (Supplement of Bioinformatics) 2007: 577-586
42	EE	Gesine Reinert, Michael S. Waterman: On the Length of the Longest Exact Position Match in a Random Sequence. IEEE/ACM Trans. Comput. Biology Bioinform. 4(1): 153-156 (2007)
41	EE	Jong Hyun Kim, Michael S. Waterman, Lei M. Li: Accuracy Assessment of Diploid Consensus Sequences. IEEE/ACM Trans. Comput. Biology Bioinform. 4(1): 88-97 (2007)
40	EE	Haifeng Li, Anton Valouev, David C. Schwartz, Michael S. Waterman, Lei M. Li: A Quantile Method for Sizing Optical Maps. Journal of Computational Biology 14(3): 255-266 (2007)
39	EE	Fei Pan, Chi-Hsien Chiu, Sudip Pulapura, Michael R. Mehan, Juan Nunez-Iglesias, Kangyu Zhang, Kiran Kamath, Michael S. Waterman, Caleb E. Finch, Xianghong Jasmine Zhou: Gene Aging Nexus: a web database and data mining platform for microarray data on aging. Nucleic Acids Research 35(Database-Issue): 756-759 (2007)
2006
38		Alberto Apostolico, Concettina Guerra, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman: Research in Computational Molecular Biology, 10th Annual International Conference, RECOMB 2006, Venice, Italy, April 2-5, 2006, Proceedings Springer 2006
37	EE	Michael S. Waterman: Whole Genome Optical Mapping. APBC 2006: 5
36	EE	Michael S. Waterman: Stan Ulam and Computational Biology. RECOMB 2006: 159-159
35	EE	Anton Valouev, Yu Zhang, David C. Schwartz, Michael S. Waterman: Refinement of optical map assemblies. Bioinformatics 22(10): 1217-1224 (2006)
34	EE	Anton Valouev, Lei Li, Yu-Chi Liu, David C. Schwartz, Yi Yang, Yu Zhang, Michael S. Waterman: Alignment of Optical Maps. Journal of Computational Biology 13(2): 442-462 (2006)
2005
33		Satoru Miyano, Jill P. Mesirov, Simon Kasif, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman: Research in Computational Molecular Biology, 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings Springer 2005
32	EE	Anton Valouev, Lei Li, Yu-Chi Liu, David C. Schwartz, Yi Yang, Yu Zhang, Michael S. Waterman: Alignment of Optical Maps. RECOMB 2005: 489-504
31	EE	Kui Zhang, Zhaohui S. Qin, Ting Chen, Jun S. Liu, Michael S. Waterman, Fengzhu Sun: HapBlock: haplotype block partitioning and tag SNP selection software using a set of dynamic programming algorithms. Bioinformatics 21(1): 131-134 (2005)
2004
30		Sorin Istrail, Michael S. Waterman, Andrew G. Clark: Computational Methods for SNPs and Haplotype Inference, DIMACS/RECOMB Satellite Workshop, Piscataway, NJ, USA, November 21-22, 2002, Revised Papers Springer 2004
29	EE	Lei M. Li, Jong Hyun Kim, Michael S. Waterman: Haplotype Reconstruction from SNP Alignment. Journal of Computational Biology 11(2/3): 505-516 (2004)
2003
28	EE	Michael S. Waterman, Yu Zhang: Eulerian Path Methods for Multiple Sequence Alignment. CSB 2003: 29
27	EE	Lei Li, Jong Hyun Kim, Michael S. Waterman: Haplotype reconstruction from SNP alignment. RECOMB 2003: 207-216
26	EE	Kui Zhang, Fengzhu Sun, Michael S. Waterman, Ting Chen: Dynamic programming algorithms for haplotype block partitioning: applications to human chromosome 21 haplotype data. RECOMB 2003: 332-340
25	EE	Yu Zhang, Michael S. Waterman: An Eulerian Path Approach to Global Multiple Alignment for DNA Sequences. Journal of Computational Biology 10(6): 803-819 (2003)
2002
24	EE	Kui Zhang, Ting Chen, Michael S. Waterman, Zhaohui S. Qin, Jun S. Liu, Fengzhu Sun: Dynamic Programming Algorithms for Haplotype Block Partitioning and Tag SNP Selection Using Haplotype Data or Genotype Data. Computational Methods for SNPs and Haplotype Inference 2002: 96-112
23		Mengxiang Tang, Michael S. Waterman, Shibu Yooseph: Zinc Finger Gene Clusters and Tandem Gene Duplication. Journal of Computational Biology 9(2): 429-446 (2002)
2001
22	EE	Pavel A. Pevzner, Haixu Tang, Michael S. Waterman: A new approach to fragment assembly in DNA sequencing. RECOMB 2001: 256-267
21	EE	Mengxiang Tang, Michael S. Waterman, Shibu Yooseph: Zinc finger gene clusters and tandem gene duplication. RECOMB 2001: 297-304
2000
20		Gesine Reinert, Sophie Schbath, Michael S. Waterman: Probabilistic and Statistical Properties of Words: An Overview. Journal of Computational Biology 7(1-2): 1-46 (2000)
1998
19	EE	Jae Kyu Lee, Vlado Dancík, Michael S. Waterman: Estimation for restriction sites observed by optical mapping using reversible-jump Markov chain Monte Carlo. RECOMB 1998: 147-152
18		Jae Kyu Lee, Vlado Dancík, Michael S. Waterman: Estimation for Restriction Sites Observed by Optical Mapping Using Reversible-Jump Markov Chain Monte Carlo Journal of Computational Biology 5(3): 505-516 (1998)
1997
17	EE	George A. Komatsoulis, Michael S. Waterman: Chimeric alignment by dynamic programming: algorithm and biological uses. RECOMB 1997: 174-180
16	EE	Fengzhu Sun, Gary Benson, Norman Arnheim, Michael S. Waterman: Pooling strategies for establishing physical genome maps using FISH. RECOMB 1997: 294-299
15		Michael S. Waterman, Sorin Istrail, Pavel A. Pevzner: Selected Papers from RECOMB'97 - Preface. Journal of Computational Biology 4(3): 215-216 (1997)
14		Fengzhu Sun, Gary Benson, Norman Arnheim, Michael S. Waterman: Pooling Strategies for Establishing Physical Genome Maps Using FISH. Journal of Computational Biology 4(4): 467-486 (1997)
1996
13	EE	Martin Vingron, Michael S. Waterman: Alignment Networks and Electrical Networks. Discrete Applied Mathematics 71(1-3): 297-309 (1996)
12		Richard Arratia, D. Martin, Gesine Reinert, Michael S. Waterman: Poisson Process Approximation for Sequence Repeats and Sequencing by Hybridization. Journal of Computational Biology 3(3): 425 (1996)
1995
11		Pavel A. Pevzner, Michael S. Waterman: Open Combinatorial Problems in Computational Molecular Biology. ISTCS 1995: 158-173
10		Pavel A. Pevzner, Michael S. Waterman: Multiple Filtration and Approximate Pattern Matching. Algorithmica 13(1/2): 135-154 (1995)
9		Ramana M. Idury, Michael S. Waterman: A New Algorithm for DNA Sequence Assembly. Journal of Computational Biology 2(2): 291-306 (1995)
1994
8	EE	William R. Schmitt, Michael S. Waterman: Linear Trees and RNA Secondary Structure. Discrete Applied Mathematics 51(3): 317-323 (1994)
1993
7		Pavel A. Pevzner, Michael S. Waterman: A Fast Filtration Algorithm for the Substring Matching Problem. CPM 1993: 197-214
6		Michael S. Waterman: Sequence Comparison and Statistical Significance in Molecular Biology (Abstract). ESA 1993: 396
1992
5		Pavel A. Pevzner, Michael S. Waterman: Matrix Longest Common Subsequence Problem, Duality and Hibert Bases. CPM 1992: 79-89
4		X. Huang, Michael S. Waterman: Dynamic programming algorithms for restriction map comparison. Computer Applications in the Biosciences 8(5): 511-520 (1992)
1991
3	EE	E. T. Chow, J. C. Peterson, Michael S. Waterman, Tim Hunkapiller, B. A. Zimmermann: A systolic array processor for biological information signal processing. ICS 1991: 216-223
1984
2		David J. Lipman, W. John Wilbur, Temple F. Smith, Michael S. Waterman: On the statistical significance of nucleic acid similarities. Nucleic Acids Research 12(1): 215-226 (1984)
1		Michael S. Waterman, Temple F. Smith, H. L. Katcher: Algorithms for restriction map comparisons. Nucleic Acids Research 12(1): 237-242 (1984)

Coauthor Index

1	Alberto Apostolico	[38]
2	Norman Arnheim	[14] [16]
3	Richard Arratia	[12]
4	Gary Benson	[14] [16]
5	Ting Chen	[24] [26] [31]
6	Chi-Hsien Chiu	[39]
7	E. T. Chow	[3]
8	Andrew G. Clark	[30]
9	Vlado Dancík	[18] [19]
10	Caleb E. Finch	[39]
11	Concettina Guerra	[38]
12	Haiyan Hu	[44]
13	Haiyan Huang	[44]
14	X. Huang	[4]
15	Yu Huang	[43] [44]
16	Tim Hunkapiller	[3]
17	Ramana M. Idury	[9]
18	Sorin Istrail	[15] [30] [33] [38]
19	Mrinal Kalakrishnan	[45]
20	Kiran Kamath	[39]
21	Simon Kasif	[33]
22	H. L. Katcher	[1]
23	Jong Hyun Kim	[27] [29] [41]
24	George A. Komatsoulis	[17]
25	Jae Kyu Lee	[18] [19]
26	Haifeng Li	[40] [44]
27	Lei Li	[27] [32] [34]
28	Lei M. Li	[29] [40] [41]
29	David J. Lipman	[2]
30	Jun S. Liu	[24] [31]
31	Yu-Chi Liu	[32] [34]
32	D. Martin	[12]
33	Michael R. Mehan	[39] [43] [45]
34	Jill P. Mesirov	[33]
35	Satoru Miyano	[33]
36	Juan Nunez-Iglesias	[39] [45]
37	Fei Pan	[39]
38	J. C. Peterson	[3]
39	Pavel A. Pevzner	[5] [7] [10] [11] [15] [22] [33] [38]
40	Sudip Pulapura	[39]
41	Zhaohui S. Qin	[24] [31]
42	Gesine Reinert	[12] [20] [42]
43	Sophie Schbath	[20]
44	William R. Schmitt	[8]
45	David C. Schwartz	[32] [34] [35] [40]
46	Temple F. Smith	[1] [2]
47	Fengzhu Sun	[14] [16] [24] [26] [31]
48	Haixu Tang	[22]
49	Mengxiang Tang	[21] [23]
50	Anton Valouev	[32] [34] [35] [40]
51	Martin Vingron	[13]
52	W. John Wilbur	[2]
53	Xifeng Yan	[43] [44]
54	Yi Yang	[32] [34]
55	Shibu Yooseph	[21] [23]
56	Philip S. Yu	[43]
57	Kangyu Zhang	[39]
58	Kui Zhang	[24] [26] [31]
59	Yu Zhang	[25] [28] [32] [34] [35]
60	Xianghong Jasmine Zhou	[39] [43] [44] [45]
61	B. A. Zimmermann	[3]

Colors in the list of coauthors