Tal Pupko

2007
16	EE	Itay Mayrose, Adi Doron-Faigenboim, Eran Bacharach, Tal Pupko: Towards realistic codon models: among site variability and dependency of synonymous and non-synonymous rates. ISMB/ECCB (Supplement of Bioinformatics) 2007: 319-327
15	EE	Matan Ninio, Eyal Privman, Tal Pupko, Nir Friedman: Phylogeny reconstruction: increasing the accuracy of pairwise distance estimation using Bayesian inference of evolutionary rates. Bioinformatics 23(2): 136-141 (2007)
14	EE	Itay Mayrose, Osnat Penn, Elana Erez, Nimrod D. Rubinstein, Tomer Shlomi, Natalia Tarnovitski Freund, Erez M. Bublil, Eytan Ruppin, Roded Sharan, Jonathan M. Gershoni, Eric Martz, Tal Pupko: Pepitope: epitope mapping from affinity-selected peptides. Bioinformatics 23(23): 3244-3246 (2007)
13	EE	Adi Stern, Adi Doron-Faigenboim, Elana Erez, Eric Martz, Eran Bacharach, Tal Pupko: Selecton 2007: advanced models for detecting positive and purifying selection using a Bayesian inference approach. Nucleic Acids Research 35(Web-Server-Issue): 506-511 (2007)
2005
12	EE	Itay Mayrose, Nir Friedman, Tal Pupko: A Gamma mixture model better accounts for among site rate heterogeneity. ECCB/JBI 2005: 158
11	EE	Guy Nimrod, Fabian Glaser, David Steinberg, Nir Ben-Tal, Tal Pupko: In silico identification of functional regions in proteins. ISMB (Supplement of Bioinformatics) 2005: 328-337
10	EE	Adi Doron-Faigenboim, Adi Stern, Itay Mayrose, Eran Bacharach, Tal Pupko: Selecton: a server for detecting evolutionary forces at a single amino-acid site. Bioinformatics 21(9): 2101-2103 (2005)
9	EE	Meytal Landau, Itay Mayrose, Yossi Rosenberg, Fabian Glaser, Eric Martz, Tal Pupko, Nir Ben-Tal: ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures. Nucleic Acids Research 33(Web-Server-Issue): 299-302 (2005)
2004
8	EE	Carine Berezin, Fabian Glaser, Josef Rosenberg, Inbal Paz, Tal Pupko, Piero Fariselli, Rita Casadio, Nir Ben-Tal: ConSeq: the identification of functionally and structurally important residues in protein sequences. Bioinformatics 20(8): 1322-1324 (2004)
7	EE	Itsik Pe'er, Tal Pupko, Ron Shamir, Roded Sharan: Incomplete Directed Perfect Phylogeny. SIAM J. Comput. 33(3): 590-607 (2004)
2003
6		Fabian Glaser, Tal Pupko, Inbal Paz, Rachel E. Bell, Dalit Bechor-Shental, Eric Martz, Nir Ben-Tal: ConSurf: Identification of Functional Regions in Proteins by Surface-Mapping of Phylogenetic Information. Bioinformatics 19(1): 163-164 (2003)
2002
5		Tal Pupko, Rachel E. Bell, Itay Mayrose, Fabian Glaser, Nir Ben-Tal: Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues. ISMB 2002: 71-77
4		Tal Pupko, Itsik Pe'er, Masami Hasegawa, Dan Graur, Nir Friedman: A branch-and-bound algorithm for the inference of ancestral amino-acid sequences when the replacement rate varies among sites: Application to the evolution of five gene families. Bioinformatics 18(8): 1116-1123 (2002)
3		Nir Friedman, Matan Ninio, Itsik Pe'er, Tal Pupko: A Structural EM Algorithm for Phylogenetic Inference. Journal of Computational Biology 9(2): 331-353 (2002)
2001
2	EE	Nir Friedman, Matan Ninio, Itsik Pe'er, Tal Pupko: A structural EM algorithm for phylogenetic inference. RECOMB 2001: 132-140
1	EE	Tal Pupko, Roded Sharan, Masami Hasegawa, Ron Shamir, Dan Graur: A Chemical-Distance-Based Test for Positive Darwinian Selection. WABI 2001: 142-155

Coauthor Index

1	Eran Bacharach	[10] [13] [16]
2	Dalit Bechor-Shental	[6]
3	Rachel E. Bell	[5] [6]
4	Nir Ben-Tal	[5] [6] [8] [9] [11]
5	Carine Berezin	[8]
6	Erez M. Bublil	[14]
7	Rita Casadio	[8]
8	Adi Doron-Faigenboim	[10] [13] [16]
9	Elana Erez	[13] [14]
10	Piero Fariselli	[8]
11	Natalia Tarnovitski Freund	[14]
12	Nir Friedman	[2] [3] [4] [12] [15]
13	Jonathan M. Gershoni	[14]
14	Fabian Glaser	[5] [6] [8] [9] [11]
15	Dan Graur	[1] [4]
16	Masami Hasegawa	[1] [4]
17	Meytal Landau	[9]
18	Eric Martz	[6] [9] [13] [14]
19	Itay Mayrose	[5] [9] [10] [12] [14] [16]
20	Guy Nimrod	[11]
21	Matan Ninio	[2] [3] [15]
22	Inbal Paz	[6] [8]
23	Itsik Pe'er	[2] [3] [4] [7]
24	Osnat Penn	[14]
25	Eyal Privman	[15]
26	Josef Rosenberg	[8]
27	Yossi Rosenberg	[9]
28	Nimrod D. Rubinstein	[14]
29	Eytan Ruppin	[14]
30	Ron Shamir	[1] [7]
31	Roded Sharan	[1] [7] [14]
32	Tomer Shlomi	[14]
33	David Steinberg	[11]
34	Adi Stern	[10] [13]