2007 |
16 | EE | Itay Mayrose,
Adi Doron-Faigenboim,
Eran Bacharach,
Tal Pupko:
Towards realistic codon models: among site variability and dependency of synonymous and non-synonymous rates.
ISMB/ECCB (Supplement of Bioinformatics) 2007: 319-327 |
15 | EE | Matan Ninio,
Eyal Privman,
Tal Pupko,
Nir Friedman:
Phylogeny reconstruction: increasing the accuracy of pairwise distance estimation using Bayesian inference of evolutionary rates.
Bioinformatics 23(2): 136-141 (2007) |
14 | EE | Itay Mayrose,
Osnat Penn,
Elana Erez,
Nimrod D. Rubinstein,
Tomer Shlomi,
Natalia Tarnovitski Freund,
Erez M. Bublil,
Eytan Ruppin,
Roded Sharan,
Jonathan M. Gershoni,
Eric Martz,
Tal Pupko:
Pepitope: epitope mapping from affinity-selected peptides.
Bioinformatics 23(23): 3244-3246 (2007) |
13 | EE | Adi Stern,
Adi Doron-Faigenboim,
Elana Erez,
Eric Martz,
Eran Bacharach,
Tal Pupko:
Selecton 2007: advanced models for detecting positive and purifying selection using a Bayesian inference approach.
Nucleic Acids Research 35(Web-Server-Issue): 506-511 (2007) |
2005 |
12 | EE | Itay Mayrose,
Nir Friedman,
Tal Pupko:
A Gamma mixture model better accounts for among site rate heterogeneity.
ECCB/JBI 2005: 158 |
11 | EE | Guy Nimrod,
Fabian Glaser,
David Steinberg,
Nir Ben-Tal,
Tal Pupko:
In silico identification of functional regions in proteins.
ISMB (Supplement of Bioinformatics) 2005: 328-337 |
10 | EE | Adi Doron-Faigenboim,
Adi Stern,
Itay Mayrose,
Eran Bacharach,
Tal Pupko:
Selecton: a server for detecting evolutionary forces at a single amino-acid site.
Bioinformatics 21(9): 2101-2103 (2005) |
9 | EE | Meytal Landau,
Itay Mayrose,
Yossi Rosenberg,
Fabian Glaser,
Eric Martz,
Tal Pupko,
Nir Ben-Tal:
ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures.
Nucleic Acids Research 33(Web-Server-Issue): 299-302 (2005) |
2004 |
8 | EE | Carine Berezin,
Fabian Glaser,
Josef Rosenberg,
Inbal Paz,
Tal Pupko,
Piero Fariselli,
Rita Casadio,
Nir Ben-Tal:
ConSeq: the identification of functionally and structurally important residues in protein sequences.
Bioinformatics 20(8): 1322-1324 (2004) |
7 | EE | Itsik Pe'er,
Tal Pupko,
Ron Shamir,
Roded Sharan:
Incomplete Directed Perfect Phylogeny.
SIAM J. Comput. 33(3): 590-607 (2004) |
2003 |
6 | | Fabian Glaser,
Tal Pupko,
Inbal Paz,
Rachel E. Bell,
Dalit Bechor-Shental,
Eric Martz,
Nir Ben-Tal:
ConSurf: Identification of Functional Regions in Proteins by Surface-Mapping of Phylogenetic Information.
Bioinformatics 19(1): 163-164 (2003) |
2002 |
5 | | Tal Pupko,
Rachel E. Bell,
Itay Mayrose,
Fabian Glaser,
Nir Ben-Tal:
Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues.
ISMB 2002: 71-77 |
4 | | Tal Pupko,
Itsik Pe'er,
Masami Hasegawa,
Dan Graur,
Nir Friedman:
A branch-and-bound algorithm for the inference of ancestral amino-acid sequences when the replacement rate varies among sites: Application to the evolution of five gene families.
Bioinformatics 18(8): 1116-1123 (2002) |
3 | | Nir Friedman,
Matan Ninio,
Itsik Pe'er,
Tal Pupko:
A Structural EM Algorithm for Phylogenetic Inference.
Journal of Computational Biology 9(2): 331-353 (2002) |
2001 |
2 | EE | Nir Friedman,
Matan Ninio,
Itsik Pe'er,
Tal Pupko:
A structural EM algorithm for phylogenetic inference.
RECOMB 2001: 132-140 |
1 | EE | Tal Pupko,
Roded Sharan,
Masami Hasegawa,
Ron Shamir,
Dan Graur:
A Chemical-Distance-Based Test for Positive Darwinian Selection.
WABI 2001: 142-155 |