2008 |
20 | EE | Theo A. Knijnenburg,
Lodewyk F. A. Wessels,
Marcel J. T. Reinders:
Combinatorial influence of environmental parameters on transcription factor activity.
ISMB 2008: 172-181 |
19 | EE | Theo A. Knijnenburg,
Lodewyk F. A. Wessels,
Marcel J. T. Reinders:
Creating gene set activity profiles with time-series expression data.
IJBRA 4(3): 306-323 (2008) |
18 | EE | Miranda van Uitert,
Wouter Meuleman,
Lodewyk F. A. Wessels:
Biclustering Sparse Binary Genomic Data.
Journal of Computational Biology 15(10): 1329-1345 (2008) |
17 | EE | Yunlei Li,
Lodewyk F. A. Wessels,
Dick de Ridder,
Marcel J. T. Reinders:
Erratum to "Classification in the presence of class noise using a probabilistic kernel fisher method": [Pattern Recognition 40 (12) 3349-3357].
Pattern Recognition 41(3): 1214 (2008) |
2007 |
16 | EE | Jeroen de Ridder,
Jaap Kool,
Anthony Uren,
Jan Bot,
Lodewyk F. A. Wessels,
Marcel J. T. Reinders:
Co-occurrence analysis of insertional mutagenesis data reveals cooperating oncogenes.
ISMB/ECCB (Supplement of Bioinformatics) 2007: 133-141 |
15 | EE | Rogier J. P. van Berlo,
Lodewyk F. A. Wessels,
Dick de Ridder,
Marcel J. T. Reinders:
Protein Complex Prediction Using an Integrative Bioinformatics Approach.
J. Bioinformatics and Computational Biology 5(4): 839-864 (2007) |
14 | EE | Yunlei Li,
Lodewyk F. A. Wessels,
Dick de Ridder,
Marcel J. T. Reinders:
Classification in the presence of class noise using a probabilistic Kernel Fisher method.
Pattern Recognition 40(12): 3349-3357 (2007) |
2006 |
13 | EE | Theo A. Knijnenburg,
Lodewyk F. A. Wessels,
Marcel J. T. Reinders:
Condition Transition Analysis Reveals TF Activity Related to Nutrient-Limitation-Specific Effects of Oxygen Presence in Yeast.
CMSB 2006: 271-284 |
12 | EE | Carmen Lai,
Marcel J. T. Reinders,
Laura J. van't Veer,
Lodewyk F. A. Wessels:
A comparison of univariate and multivariate gene selection techniques for classification of cancer datasets.
BMC Bioinformatics 7: 235 (2006) |
11 | EE | Carmen Lai,
Marcel J. T. Reinders,
Lodewyk F. A. Wessels:
Random subspace method for multivariate feature selection.
Pattern Recognition Letters 27(10): 1067-1076 (2006) |
10 | EE | Theo A. Knijnenburg,
Marcel J. T. Reinders,
Lodewyk F. A. Wessels:
Artifacts of Markov blanket filtering based on discretized features in small sample size applications.
Pattern Recognition Letters 27(7): 709-714 (2006) |
2005 |
9 | EE | Rogier J. P. van Berlo,
Lodewyk F. A. Wessels,
S. D. C. Martes,
Marcel J. T. Reinders:
Predicting gene function by combining expression and interaction data.
CSB Workshops 2005: 166-167 |
8 | EE | Rogier J. P. van Berlo,
Lodewyk F. A. Wessels,
S. D. C. Martes,
Marcel J. T. Reinders:
Identifying Orthologs: Cycle Splitting on the Breakpoint Graph.
CSB Workshops 2005: 65-68 |
7 | EE | Theo A. Knijnenburg,
Marcel J. T. Reinders,
J. M. Daran,
P. Daran-Lapujade,
Lodewyk F. A. Wessels:
Relating transcription factors, modules of genes and cultivation conditions in Saccharomyces cerevisiae.
CSB Workshops 2005: 71-72 |
6 | EE | Lodewyk F. A. Wessels,
Marcel J. T. Reinders,
Augustinus A. M. Hart,
Cor J. Veenman,
Hongyue Dai,
Yudong D. He,
Laura J. van't Veer:
A protocol for building and evaluating predictors of disease state based on microarray data.
Bioinformatics 21(19): 3755-3762 (2005) |
2003 |
5 | EE | Eugene P. van Someren,
Lodewyk F. A. Wessels,
Eric Backer,
Marcel J. T. Reinders:
Multi-criterion optimization for genetic network modeling.
Signal Processing 83(4): 763-775 (2003) |
2001 |
4 | EE | Lodewyk F. A. Wessels,
Eugene P. van Someren,
Marcel J. T. Reinders:
A Comparison of Genetic Network Models.
Pacific Symposium on Biocomputing 2001: 508-519 |
3 | EE | Peter J. van der Veen,
Lodewyk F. A. Wessels,
J. W. Slootstra,
R. H. Meloen,
Marcel J. T. Reinders,
J. Hellendoorn:
Determination of Binding Amino Acids Based on Random Peptide Array Screening Data.
WABI 2001: 264-277 |
2000 |
2 | | Eugene P. van Someren,
Lodewyk F. A. Wessels,
Marcel J. T. Reinders:
Linear Modeling of Genetic Networks from Experimental Data.
ISMB 2000: 355-366 |
1999 |
1 | EE | Lodewyk F. A. Wessels,
Eugene P. van Someren,
Marcel J. T. Reinders:
Information processing for intelligent molecular diagnosis.
Pattern Recognition Letters 20(11-13): 1457-1465 (1999) |