2008 |
31 | EE | Florian Reisinger,
Manuel Corpas,
John Hancock,
Henning Hermjakob,
Ewan Birney,
Pascal Kahlem:
ENFIN - An Integrative Structure for Systems Biology.
DILS 2008: 132-143 |
30 | EE | Elspeth A. Bruford,
Michael J. Lush,
Mathew W. Wright,
Tam P. Sneddon,
Sue Povey,
Ewan Birney:
The HGNC Database in 2008: a resource for the human genome.
Nucleic Acids Research 36(Database-Issue): 445-448 (2008) |
29 | EE | Guy Cochrane,
Ruth Akhtar,
Philippe Aldebert,
Nicola Althorpe,
Alastair Baldwin,
Kirsty Bates,
Sumit Bhattacharyya,
James K. Bonfield,
Lawrence Bower,
Paul Browne,
Matias Castro,
Tony Cox,
Fehmi Demiralp,
Ruth Eberhardt,
Nadeem Faruque,
Gemma Hoad,
Mikyung Jang,
Tamara Kulikova,
Alberto Labarga,
Rasko Leinonen,
Steven Leonard,
Quan Lin,
Rodrigo Lopez,
Dariusz Lorenc,
Hamish McWilliam,
Gaurab Mukherjee,
Francesco Nardone,
Sheila Plaister,
Stephen Robinson,
Siamak Sobhany,
Robert Vaughan,
Dan Wu,
Weimin Zhu,
Rolf Apweiler,
Tim J. P. Hubbard,
Ewan Birney:
Priorities for nucleotide trace, sequence and annotation data capture at the Ensembl Trace Archive and the EMBL Nucleotide Sequence Database.
Nucleic Acids Research 36(Database-Issue): 5-12 (2008) |
28 | EE | Paul Flicek,
B. L. Aken,
K. Beal,
B. Ballester,
Mario Cáccamo,
Yuan Chen,
Laura Clarke,
G. Coates,
Fiona Cunningham,
Tim Cutts,
Thomas A. Down,
S. C. Dyer,
T. Eyre,
S. Fitzgerald,
J. Fernandez-Banet,
Stefan Gräf,
S. Haider,
Martin Hammond,
Richard C. G. Holland,
Kevin L. Howe,
K. Howe,
N. Johnson,
A. Jenkinson,
Andreas Kähäri,
Damian Keefe,
Felix Kokocinski,
Eugene Kulesha,
Daniel Lawson,
I. Longden,
Karine Megy,
Patrick Meidl,
B. Overduin,
A. Parker,
B. Pritchard,
Andreas Prlic,
S. Rice,
D. Rios,
M. Schuster,
I. Sealy,
Guy Slater,
Damian Smedley,
G. Spudich,
S. Trevanion,
Albert J. Vilella,
J. Vogel,
S. White,
M. Wood,
Ewan Birney,
Tony Cox,
Val Curwen,
Richard Durbin,
X. M. Fernandez-Suarez,
J. Herrero,
Tim J. P. Hubbard,
Arek Kasprzyk,
Glenn Proctor,
James Smith,
Abel Ureta-Vidal,
Stephen M. J. Searle:
Ensembl 2008.
Nucleic Acids Research 36(Database-Issue): 707-714 (2008) |
2007 |
27 | EE | Stefan Gräf,
Fiona G. G. Nielsen,
Stefan Kurtz,
Martijn A. Huynen,
Ewan Birney,
Henk Stunnenberg,
Paul Flicek:
Optimized design and assessment of whole genome tiling arrays.
ISMB/ECCB (Supplement of Bioinformatics) 2007: 195-204 |
26 | EE | Bernard de Bono,
Imre Vastrik,
Peter D'Eustachio,
Esther Schmidt,
Gopal Gopinath,
David Croft,
Marc Gillespie,
Bijay Jassal,
Suzanna Lewis,
Lisa Matthews,
Guanming Wu,
Ewan Birney,
Lincoln Stein:
Reactome: An integrated expert model of human molecular processes and access toolkit.
J. Integrative Bioinformatics 4(3): (2007) |
25 | EE | Daniel Lawson,
Peter Arensburger,
Peter Atkinson,
Nora J. Besansky,
Robert V. Bruggner,
Ryan Butler,
Kathryn S. Campbell,
George K. Christophides,
Scott Christley,
Emmanuel Dialynas,
David Emmert,
Martin Hammond,
Catherine A. Hill,
Ryan C. Kennedy,
Neil F. Lobo,
M. Robert MacCallum,
Gregory R. Madey,
Karine Megy,
Seth Redmond,
Susan Russo,
David W. Severson,
Eric O. Stinson,
Pantelis Topalis,
Evgeni M. Zdobnov,
Ewan Birney,
William M. Gelbart,
Fotis C. Kafatos,
Christos Louis,
Frank H. Collins:
VectorBase: a home for invertebrate vectors of human pathogens.
Nucleic Acids Research 35(Database-Issue): 503-505 (2007) |
24 | EE | Tim J. P. Hubbard,
B. L. Aken,
K. Beal,
B. Ballester,
Mario Cáccamo,
Yuan Chen,
Laura Clarke,
G. Coates,
Fiona Cunningham,
Tim Cutts,
Thomas Down,
S. C. Dyer,
S. Fitzgerald,
J. Fernandez-Banet,
Stefan Gräf,
S. Haider,
Martin Hammond,
J. Herrero,
Richard C. G. Holland,
Kevin L. Howe,
K. Howe,
N. Johnson,
Andreas Kähäri,
Damian Keefe,
Felix Kokocinski,
Eugene Kulesha,
Daniel Lawson,
I. Longden,
Craig Melsopp,
Karine Megy,
Patrick Meidl,
B. Ouverdin,
A. Parker,
Andreas Prlic,
S. Rice,
D. Rios,
M. Schuster,
I. Sealy,
J. Severin,
Guy Slater,
Damian Smedley,
G. Spudich,
S. Trevanion,
Albert J. Vilella,
J. Vogel,
S. White,
M. Wood,
Tony Cox,
Val Curwen,
Richard Durbin,
X. M. Fernandez-Suarez,
Paul Flicek,
Arek Kasprzyk,
Glenn Proctor,
Stephen M. J. Searle,
James Smith,
Abel Ureta-Vidal,
Ewan Birney:
Ensembl 2007.
Nucleic Acids Research 35(Database-Issue): 610-617 (2007) |
2006 |
23 | EE | Andreas Prlic,
Ewan Birney,
Tony Cox,
Thomas A. Down,
Robert D. Finn,
Stefan Gräf,
David K. Jackson,
Andreas Kähäri,
Eugene Kulesha,
Roger Pettett,
James Smith,
Jim Stalker,
Tim J. P. Hubbard:
The Distributed Annotation System for Integration of Biological Data.
DILS 2006: 195-203 |
22 | EE | Esther Schmidt,
Ewan Birney,
David Croft,
Bernard de Bono,
Peter D'Eustachio,
Marc Gillespie,
Gopal Gopinath,
Bijay Jassal,
Suzanna Lewis,
Lisa Matthews,
Lincoln Stein,
Imre Vastrik,
Guanming Wu:
Reactome - A Knowledgebase of Biological Pathways.
OTM Workshops (1) 2006: 710-719 |
21 | EE | Ewan Birney,
T. Daniel Andrews,
Mario Cáccamo,
Yuan Chen,
Laura Clarke,
G. Coates,
Tony Cox,
Fiona Cunningham,
Val Curwen,
Tim Cutts,
Thomas Down,
Richard Durbin,
X. M. Fernandez-Suarez,
Paul Flicek,
Stefan Gräf,
Martin Hammond,
J. Herrero,
Kevin L. Howe,
V. Iyer,
K. Jekosch,
Andreas Kähäri,
Arek Kasprzyk,
Damian Keefe,
Felix Kokocinski,
Eugene Kulesha,
D. London,
I. Longden,
Craig Melsopp,
Patrick Meidl,
B. Overduin,
A. Parker,
Glenn Proctor,
Andreas Prlic,
Mark Rae,
D. Rios,
Seth Redmond,
M. Schuster,
I. Sealy,
Stephen M. J. Searle,
J. Severin,
Guy Slater,
Damian Smedley,
James Smith,
Arne Stabenau,
Jim Stalker,
S. Trevanion,
Abel Ureta-Vidal,
J. Vogel,
S. White,
Cara Woodwark,
Tim J. P. Hubbard:
Ensembl 2006.
Nucleic Acids Research 34(Database-Issue): 556-561 (2006) |
2005 |
20 | EE | Eduardo Eyras,
Alexandre Reymond,
Robert Castelo,
Jacqueline M. Bye,
Francisco Camara,
Paul Flicek,
Elizabeth J. Huckle,
Genis Parra,
David D. Shteynberg,
Carine Wyss,
Jane Rogers,
Stylianos E. Antonarakis,
Ewan Birney,
Roderic Guigó,
Michael R. Brent:
Gene finding in the chicken genome.
BMC Bioinformatics 6: 131 (2005) |
19 | EE | Guy St. C. Slater,
Ewan Birney:
Automated generation of heuristics for biological sequence comparison.
BMC Bioinformatics 6: 31 (2005) |
18 | EE | G. Joshi-Tope,
Marc Gillespie,
Imre Vastrik,
Peter D'Eustachio,
Esther Schmidt,
Bernard de Bono,
Bijay Jassal,
G. R. Gopinath,
G. R. Wu,
Lisa Matthews,
Suzanna Lewis,
Ewan Birney,
Lincoln Stein:
Reactome: a knowledgebase of biological pathways.
Nucleic Acids Research 33(Database-Issue): 428-432 (2005) |
17 | EE | Tim J. P. Hubbard,
D. Andrews,
Mario Cáccamo,
Graham Cameron,
Yuan Chen,
Michele E. Clamp,
Laura Clarke,
G. Coates,
Tony Cox,
Fiona Cunningham,
Val Curwen,
Tim Cutts,
Thomas Down,
Richard Durbin,
X. M. Fernandez-Suarez,
James Gilbert,
Martin Hammond,
J. Herrero,
H. Hotz,
Kevin L. Howe,
V. Iyer,
K. Jekosch,
Andreas Kähäri,
Arek Kasprzyk,
Damian Keefe,
S. Keenan,
Felix Kokocinski,
D. London,
I. Longden,
Graham P. McVicker,
Craig Melsopp,
Patrick Meidl,
Simon C. Potter,
Glenn Proctor,
Mark Rae,
D. Rios,
M. Schuster,
Stephen M. J. Searle,
J. Severin,
Guy Slater,
Damian Smedley,
James Smith,
William Spooner,
Arne Stabenau,
Jim Stalker,
R. Storey,
S. Trevanion,
Abel Ureta-Vidal,
J. Vogel,
S. White,
Cara Woodwark,
Ewan Birney:
Ensembl 2005.
Nucleic Acids Research 33(Database-Issue): 447-453 (2005) |
2004 |
16 | | Ewan Birney,
Michele E. Clamp:
Biological database design and implementation.
Briefings in Bioinformatics 5(1): 31-38 (2004) |
15 | EE | Ewan Birney,
T. Daniel Andrews,
Paul Bevan,
Mario Cáccamo,
Graham Cameron,
Yuan Chen,
Laura Clarke,
G. Coates,
Tony Cox,
James A. Cuff,
Val Curwen,
Tim Cutts,
Thomas Down,
Richard Durbin,
Eduardo Eyras,
X. M. Fernandez-Suarez,
P. Gane,
B. Gibbins,
James Gilbert,
Martin Hammond,
H. Hotz,
V. Iyer,
Andreas Kähäri,
K. Jekosch,
Arek Kasprzyk,
Damian Keefe,
S. Keenan,
Heikki Lehväslaiho,
Graham P. McVicker,
Craig Melsopp,
Patrick Meidl,
Emmanuel Mongin,
Roger Pettett,
Simon C. Potter,
Glenn Proctor,
Mark Rae,
Stephen M. J. Searle,
Guy Slater,
Damian Smedley,
James Smith,
William Spooner,
Arne Stabenau,
Jim Stalker,
R. Storey,
Abel Ureta-Vidal,
Cara Woodwark,
Michele E. Clamp,
Tim J. P. Hubbard:
Ensembl 2004.
Nucleic Acids Research 32(Database-Issue): 468-470 (2004) |
2003 |
14 | | Michele E. Clamp,
T. Daniel Andrews,
Daniel Barker,
Paul Bevan,
Graham Cameron,
Yuan Chen,
Laura Clarke,
Tony Cox,
James A. Cuff,
Val Curwen,
Thomas Down,
Richard Durbin,
Eduardo Eyras,
James Gilbert,
Martin Hammond,
Tim J. P. Hubbard,
Arek Kasprzyk,
Damian Keefe,
Heikki Lehväslaiho,
V. Iyer,
Craig Melsopp,
Emmanuel Mongin,
Roger Pettett,
Simon C. Potter,
Alastair Rust,
Esther Schmidt,
Stephen M. J. Searle,
Guy Slater,
James Smith,
William Spooner,
Arne Stabenau,
Jim Stalker,
Elia Stupka,
Abel Ureta-Vidal,
Imre Vastrik,
Ewan Birney:
Ensembl 2002: accommodating comparative genomics.
Nucleic Acids Research 31(1): 38-42 (2003) |
13 | | Catherine Brooksbank,
Evelyn Camon,
Midori A. Harris,
Michele Magrane,
Maria Jesus Martin,
Nicola J. Mulder,
Claire O'Donovan,
Helen E. Parkinson,
Mary Ann Tuli,
Rolf Apweiler,
Ewan Birney,
Alvis Brazma,
Kim Henrick,
Rodrigo Lopez,
Guenter Stoesser,
Peter Stoehr,
Graham Cameron:
The European Bioinformatics Institute's data resources.
Nucleic Acids Research 31(1): 43-50 (2003) |
2002 |
12 | | Alex Bateman,
Ewan Birney,
Lorenzo Cerutti,
Richard Durbin,
Laurence Ettwiller,
Sean R. Eddy,
Sam Griffiths-Jones,
Kevin L. Howe,
Mhairi Marshall,
Erik L. L. Sonnhammer:
The Pfam Protein Families Database.
Nucleic Acids Research 30(1): 276-280 (2002) |
11 | | Tim J. P. Hubbard,
Daniel Barker,
Ewan Birney,
Graham Cameron,
Yuan Chen,
Laura Clarke,
Tony Cox,
James A. Cuff,
Val Curwen,
Thomas Down,
Richard Durbin,
Eduardo Eyras,
James Gilbert,
Martin Hammond,
Lukasz Huminiecki,
Arek Kasprzyk,
Heikki Lehväslaiho,
Philip Lijnzaad,
Craig Melsopp,
Emmanuel Mongin,
Roger Pettett,
Matthew R. Pocock,
Simon C. Potter,
Alastair Rust,
Esther Schmidt,
Stephen M. J. Searle,
Guy Slater,
James Smith,
William Spooner,
Arne Stabenau,
Jim Stalker,
Elia Stupka,
Abel Ureta-Vidal,
Imre Vastrik,
Michele E. Clamp:
The Ensembl genome database project.
Nucleic Acids Research 30(1): 38-41 (2002) |
2001 |
10 | | Ewan Birney:
Ensembl: Annotating metazoan genomes.
German Conference on Bioinformatics 2001: 125 |
9 | EE | Ewan Birney:
Hidden Markov models in biological sequence analysis.
IBM Journal of Research and Development 45(3): 449-454 (2001) |
8 | | Rolf Apweiler,
Terri K. Attwood,
Amos Bairoch,
Alex Bateman,
Ewan Birney,
Margaret Biswas,
Philipp Bucher,
Lorenzo Cerutti,
Florence Corpet,
Michael D. R. Croning,
Richard Durbin,
Laurent Falquet,
Wolfgang Fleischmann,
Jérôme Gouzy,
Henning Hermjakob,
Nicolas Hulo,
Inge Jonassen,
Daniel Kahn,
Alexander Kanapin,
Youla Karavidopoulou,
Rodrigo Lopez,
Beate Marx,
Nicola J. Mulder,
Thomas M. Oinn,
Marco Pagni,
Florence Servant,
Christian J. A. Sigrist,
Evgeni M. Zdobnov:
The InterPro database, an integrated documentation resource for protein families, domains and functional sites.
Nucleic Acids Research 29(1): 37-40 (2001) |
2000 |
7 | | Rolf Apweiler,
Terri K. Attwood,
Amos Bairoch,
Alex Bateman,
Ewan Birney,
Margaret Biswas,
Philipp Bucher,
Lorenzo Cerutti,
Florence Corpet,
Michael D. R. Croning,
Richard Durbin,
Laurent Falquet,
Wolfgang Fleischmann,
Jérôme Gouzy,
Henning Hermjakob,
Nicolas Hulo,
Inge Jonassen,
Daniel Kahn,
Alexander Kanapin,
Youla Karavidopoulou,
Rodrigo Lopez,
Beate Marx,
Nicola J. Mulder,
Thomas M. Oinn,
Marco Pagni,
Florence Servant,
Christian J. A. Sigrist,
Evgeni M. Zdobnov:
InterPro-an integrated documentation resource for protein families, domains and functional sites.
Bioinformatics 16(12): 1145-1150 (2000) |
6 | | James A. Cuff,
Ewan Birney,
Michele E. Clamp,
Geoffrey J. Barton:
ProtEST: protein multiple sequence alignments from expressed sequence tags.
Bioinformatics 16(2): 111-116 (2000) |
5 | | Alex Bateman,
Ewan Birney,
Richard Durbin,
Sean R. Eddy,
Kevin L. Howe,
Erik L. L. Sonnhammer:
The Pfam Protein Families Database.
Nucleic Acids Research 28(1): 263-266 (2000) |
1999 |
4 | | Alex Bateman,
Ewan Birney,
Richard Durbin,
Sean R. Eddy,
Robert D. Finn,
Erik L. L. Sonnhammer:
Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins.
Nucleic Acids Research 27(1): 260-262 (1999) |
1998 |
3 | | Matthew R. Pocock,
Tim J. P. Hubbard,
Ewan Birney:
SPEM: a parser for EMBL style flat file database entries.
Bioinformatics 14(9): 823-824 (1998) |
2 | | Erik L. L. Sonnhammer,
Sean R. Eddy,
Ewan Birney,
Alex Bateman,
Richard Durbin:
Pfam: multiple sequence alignments and HMM-profiles of protein domains.
Nucleic Acids Research 26(1): 320-322 (1998) |
1997 |
1 | | Ewan Birney,
Richard Durbin:
Dynamite: A Flexible Code Generating Language for Dynamic Programming Methods Used in Sequence Comparison.
ISMB 1997: 56-64 |