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Knut Reinert

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2008
38EETobias Rausch, Anne-Katrin Emde, David Weese, Andreas Döring, Cédric Notredame, Knut Reinert: Segment-based multiple sequence alignment. ECCB 2008: 187-192
37EEMarcel H. Schulz, David Weese, Tobias Rausch, Andreas Döring, Knut Reinert, Martin Vingron: Fast and Adaptive Variable Order Markov Chain Construction. WABI 2008: 306-317
36EEOle Schulz-Trieglaff, Rene Hussong, Clemens Gröpl, Andreas Leinenbach, Andreas Hildebrandt, Christian G. Huber, Knut Reinert: Computational Quantification of Peptides from LC-MS Data. Journal of Computational Biology 15(7): 685-704 (2008)
2007
35 Knut Reinert, Markus Bauer, Andreas Döring, Gunnar W. Klau, Aaron L. Halpern: A General Paradigm for Fast, Adaptive Clustering of Biological Sequences. German Conference on Bioinformatics 2007: 15-29
34EEEva Lange, Clemens Gröpl, Ole Schulz-Trieglaff, Andreas Leinenbach, Christian G. Huber, Knut Reinert: A geometric approach for the alignment of liquid chromatography - mass spectrometry data. ISMB/ECCB (Supplement of Bioinformatics) 2007: 273-281
33EEOle Schulz-Trieglaff, Rene Hussong, Clemens Gröpl, Andreas Hildebrandt, Knut Reinert: A Fast and Accurate Algorithm for the Quantification of Peptides from Mass Spectrometry Data. RECOMB 2007: 473-487
32EEOliver Kohlbacher, Knut Reinert, Clemens Gröpl, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Marc Sturm: TOPP - the OpenMS proteomics pipeline. Bioinformatics 23(2): 191-197 (2007)
31EEGunnar W. Klau, Sven Rahmann, Alexander Schliep, Martin Vingron, Knut Reinert: Integer linear programming approaches for non-unique probe selection. Discrete Applied Mathematics 155(6-7): 840-856 (2007)
2006
30 Christian G. Huber, Oliver Kohlbacher, Knut Reinert: Computational Proteomics, 20.-25. November 2005 Internationales Begegnungs- und Forschungszentrum für Informatik (IBFI), Schloss Dagstuhl, Germany 2006
29EEEva Lange, Clemens Gröpl, Knut Reinert, Oliver Kohlbacher, Andreas Hildebrandt: High-Accuracy Peak Picking of Proteomics Data Using Wavelet Techniques. Pacific Symposium on Biocomputing 2006: 243-254
28EEErnst Althaus, Alberto Caprara, Hans-Peter Lenhof, Knut Reinert: A branch-and-cut algorithm for multiple sequence alignment. Math. Program. 105(2-3): 387-425 (2006)
2005
27EEClemens Gröpl, Eva Lange, Knut Reinert, Oliver Kohlbacher, Marc Sturm, Christian G. Huber, Bettina M. Mayr, Christoph L. Klein: Algorithms for the Automated Absolute Quantification of Diagnostic Markers in Complex Proteomics Samples. CompLife 2005: 151-162
26EEMarkus Bauer, Gunnar W. Klau, Knut Reinert: Fast and Accurate Structural RNA Alignment by Progressive Lagrangian Optimization. CompLife 2005: 217-228
25EEChristian G. Huber, Oliver Kohlbacher, Knut Reinert: 05471 Abstract Collection - Computational Proteomics. Computational Proteomics 2005
24EEChristian G. Huber, Oliver Kohlbacher, Knut Reinert: 05471 Executive Summary - Computational Proteomics. Computational Proteomics 2005
23EENathanaël Delmotte, Bettina M. Mayr, Andreas Leinenbach, Knut Reinert, Oliver Kohlbacher, Christoph L. Klein, Christian G. Huber: Evaluation of LC-MS data for the absolute quantitative analysis of marker proteins. Computational Proteomics 2005
22EEMarkus Bauer, Gunnar W. Klau, Knut Reinert: Multiple Structural RNA Alignment with Lagrangian Relaxation. WABI 2005: 303-314
21EEWitold E. Wolski, Maciej Lalowski, Peter Jungblut, Knut Reinert: Calibration of mass spectrometric peptide mass fingerprint data without specific external or internal calibrants. BMC Bioinformatics 6: 203 (2005)
20EEWitold E. Wolski, Maciej Lalowski, Peter Martus, Ralf Herwig, Patrick Giavalisco, Johan Gobom, Albert Sickmann, Hans Lehrach, Knut Reinert: Transformation and other factors of the peptide mass spectrometry pairwise peak-list comparison process. BMC Bioinformatics 6: 285 (2005)
2004
19EEGunnar W. Klau, Sven Rahmann, Alexander Schliep, Martin Vingron, Knut Reinert: Optimal robust non-unique probe selection using Integer Linear Programming. ISMB/ECCB (Supplement of Bioinformatics) 2004: 186-193
18EEOliver Kohlbacher, Knut Reinert: Differenzielle Proteomanalyse - Experimentelle Methoden, algorithmische Herausforderungen (Differential Analysis in Proteomics: Experimental Methods, Algorithmic Challenges). it - Information Technology 46(1): 31-38 (2004)
2002
17 Ernst Althaus, Alberto Caprara, Hans-Peter Lenhof, Knut Reinert: Multiple sequence alignment with arbitrary gap costs: Computing an optimal solution using polyhedral combinatorics. ECCB 2002: 4-16
16EEAaron L. Halpern, Daniel H. Huson, Knut Reinert: Segment Match Refinement and Applications. WABI 2002: 126-139
15EEDaniel H. Huson, Knut Reinert, Eugene W. Myers: The greedy path-merging algorithm for contig scaffolding. J. ACM 49(5): 603-615 (2002)
2001
14EERussell J. Turner, Kabir Chaturvedi, Nathan Edwards, Daniel P. Fasulo, Aaron L. Halpern, Daniel H. Huson, Oliver Kohlbacher, Jason R. Miller, Knut Reinert, Karin A. Remington, Russell Schwartz, Brian Walenz, Shibu Yooseph, Sorin Istrail: Visualization challenges for a new cyberpharmaceutical computing paradigm. IEEE Symposium on Parallel and Large-Data Visualization and Graphics 2001: 7-18
13 Daniel H. Huson, Knut Reinert, Saul A. Kravitz, Karin A. Remington, Arthur L. Delcher, Ian M. Dew, Michael Flanigan, Aaron L. Halpern, Zhongwu Lai, Clark M. Mobarry, Granger G. Sutton, Eugene W. Myers: Design of a compartmentalized shotgun assembler for the human genome. ISMB (Supplement of Bioinformatics) 2001: 132-139
12EEDaniel H. Huson, Knut Reinert, Eugene W. Myers: The greedy path-merging algorithm for sequence assembly. RECOMB 2001: 157-163
11EEDaniel H. Huson, Aaron L. Halpern, Zhongwu Lai, Eugene W. Myers, Knut Reinert, Granger G. Sutton: Comparing Assemblies Using Fragments and Mate-Pairs. WABI 2001: 294-306
2000
10 Knut Reinert, Jens Stoye, Torsten Will: An iterative method for faster sum-of-pairs multiple sequence alignment. Bioinformatics 16(9): 808-814 (2000)
9 John D. Kececioglu, Hans-Peter Lenhof, Kurt Mehlhorn, Petra Mutzel, Knut Reinert, Martin Vingron: A polyhedral approach to sequence alignment problems. Discrete Applied Mathematics 104(1-3): 143-186 (2000)
8 Martin Lermen, Knut Reinert: The Practical Use of the A* Algorithm for Exact Multiple Sequence Alignment. Journal of Computational Biology 7(5): 655-671 (2000)
1999
7 Knut Reinert, Jens Stoye, Torsten Will: Combining Divide-and-Conquer, the A*-Algorithm, and Successive Realignment Approaches to Speed Multiple Sequence Alignment. German Conference on Bioinformatics 1999: 17-24
6 Hans-Peter Lenhof, Burkhard Morgenstern, Knut Reinert: An exact solution for the segment-to-segment multiple sequence alignment problem. Bioinformatics 15(3): 203-210 (1999)
1998
5 Knut Reinert, Hans-Peter Lenhof, Burkhard Morgenstern: An exact solution for the Segment-to-Segment multiple sequence alignment problem. German Conference on Bioinformatics 1998
4EEHans-Peter Lenhof, Knut Reinert, Martin Vingron: A polyhedral approach to RNA sequence structure alignment. RECOMB 1998: 153-162
3 Hans-Peter Lenhof, Knut Reinert, Martin Vingron: A Polyhedral Approach to RNA Sequence Structure Alignment. Journal of Computational Biology 5(3): 517-530 (1998)
1997
2EEKnut Reinert, Hans-Peter Lenhof, Petra Mutzel, Kurt Mehlhorn, John D. Kececioglu: A branch-and-cut algorithm for multiple sequence alignment. RECOMB 1997: 241-250
1996
1 Phillip G. Bradford, Knut Reinert: Lower Bounds for Row Minima Searching (Extended Abstract). ICALP 1996: 454-465

Coauthor Index

1Ernst Althaus [17] [28]
2Markus Bauer [22] [26] [35]
3Phillip G. Bradford [1]
4Alberto Caprara [17] [28]
5Kabir Chaturvedi [14]
6Arthur L. Delcher [13]
7Nathanaël Delmotte [23]
8Ian M. Dew [13]
9Andreas Döring [35] [37] [38]
10Nathan Edwards [14]
11Anne-Katrin Emde [38]
12Daniel P. Fasulo [14]
13Michael Flanigan [13]
14Patrick Giavalisco [20]
15Johan Gobom [20]
16Clemens Gröpl [27] [29] [32] [33] [34] [36]
17Aaron L. Halpern [11] [13] [14] [16] [35]
18Ralf Herwig [20]
19Andreas Hildebrandt [29] [33] [36]
20Christian G. Huber [23] [24] [25] [27] [30] [34] [36]
21Daniel H. Huson [11] [12] [13] [14] [15] [16]
22Rene Hussong [33] [36]
23Sorin Istrail [14]
24Peter Jungblut [21]
25John D. Kececioglu [2] [9]
26Gunnar W. Klau [19] [22] [26] [31] [35]
27Christoph L. Klein [23] [27]
28Oliver Kohlbacher [14] [18] [23] [24] [25] [27] [29] [30] [32]
29Saul A. Kravitz [13]
30Zhongwu Lai [11] [13]
31Maciej Lalowski [20] [21]
32Eva Lange [27] [29] [32] [34]
33Hans Lehrach [20]
34Andreas Leinenbach [23] [34] [36]
35Hans-Peter Lenhof [2] [3] [4] [5] [6] [9] [17] [28]
36Martin Lermen [8]
37Peter Martus [20]
38Bettina M. Mayr [23] [27]
39Kurt Mehlhorn [2] [9]
40Jason R. Miller [14]
41Clark M. Mobarry [13]
42Burkhard Morgenstern [5] [6]
43Petra Mutzel [2] [9]
44Eugene W. Myers (Gene Myers) [11] [12] [13] [15]
45Cédric Notredame [38]
46Nico Pfeifer [32]
47Sven Rahmann [19] [31]
48Tobias Rausch [37] [38]
49Karin A. Remington [13] [14]
50Alexander Schliep [19] [31]
51Marcel H. Schulz [37]
52Ole Schulz-Trieglaff [32] [33] [34] [36]
53Russell Schwartz [14]
54Albert Sickmann [20]
55Jens Stoye [7] [10]
56Marc Sturm [27] [32]
57Granger G. Sutton [11] [13]
58Russell J. Turner [14]
59Martin Vingron [3] [4] [9] [19] [31] [37]
60Brian Walenz [14]
61David Weese [37] [38]
62Torsten Will [7] [10]
63Witold E. Wolski [20] [21]
64Shibu Yooseph [14]

Colors in the list of coauthors

Copyright © Sun May 17 03:24:02 2009 by Michael Ley (ley@uni-trier.de)