7. PSB 2002:
Lihue,
Hawaii,
USA
Proceedings of the 7th Pacific Symposium on Biocomputing (PSB 2002),
Lihue,
Hawaii,
USA,
January 3-7,
2002
Human Genome Variation:
Disease,
Drug Response,
and Clinical Phenotypes
- Francisco M. de la Vega, Isaac S. Kohane, J. A. Schneider, J. C. Stephens:
Human Genome Variation: Disease, Drug Response, and Clinical Phenotypes - Session Introduction.
3-5
Electronic Edition (link) BibTeX
- Asa Ben-Hur, André Elisseeff, Isabelle Guyon:
A Stability Based Method for Discovering Structure in Clustered Data.
6-17
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- Debashis Ghosh:
Singular Value Decomposition Regression Models for Classification of Tumors from Microarray Experiments.
18-29
Electronic Edition (link) BibTeX
- J. Heil, S. Glanowski, J. Scott, E. Winn-Deen, I. McMullen, L. Wu, C. Gire, A. Sprague:
An Automated Computer System to Support Ultra High Throughput SNP Genotyping.
30-40
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- Bradley Malin, Latanya Sweeney:
Inferring Genotype from Clinical Phenotype through a Knowledge Based Algorithm.
41-52
Electronic Edition (link) BibTeX
- Jason H. Moore, Lance W. Hahn:
A Cellular Automata Approach to Detecting Interactions Among Single-nucleotide Polymorphisms in Complex Multifactorial Diseases.
53-64
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- Diane E. Oliver, Daniel L. Rubin, Joshua M. Stuart, Micheal Hewett, Teri E. Klein, Russ B. Altman:
Ontology Development for a Pharmacogenetics Knowledge Base.
65-76
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- R. Brian Potter, Sorin Draghici:
A SOFM Approach to Predicting HIV Drug Resistance.
77-87
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- Daniel L. Rubin, Micheal Hewett, Diane E. Oliver, Teri E. Klein, Russ B. Altman:
Automating Data Acquisition into Ontologies from Pharmacogenetics Relational Data Sources Using Declarative Object Definitions and XML.
88-99
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- Shuanglin Zhang, Kui Zhang, Jinming Li, Hongyu Zhao:
On a Family-Based Haplotype Pattern Mining Method for Linkage Disequilibrium Mapping.
100-111
Electronic Edition (link) BibTeX
Genome-Wide Analysis and Comparative Genomics
- Inna Dubchak, Lior Pachter, Liping Wei:
Genome-Wide Analysis and Comparative Genomics - Session Introduction.
112-114
Electronic Edition (link) BibTeX
- F. Chiaromonte, V. B. Yap, W. Miller:
Scoring Pairwise Genomic Sequence Alignments.
115-126
Electronic Edition (link) BibTeX
- Melissa S. Cline, Guoying Liu, Ann E. Loraine, Ron Shigeta, Jill Cheng, Gangwu Mei, David Kulp, Michael A. Siani-Rose:
Structure-Based Comparison of Four Eukaryotic Genomes.
127-138
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- Debra Goldberg, Susan McCouch, Jon M. Kleinberg:
Constructing Comparative Genome Maps with Unresolved Marker Order.
139-150
Electronic Edition (link) BibTeX
- Rachid Gherbi, Joan Hérisson:
Representation and Processing of Complex DNA Spatial Architecture and its Annotated Genomic Content.
151-162
Electronic Edition (link) BibTeX
- Ian Holmes, Gerald M. Rubin:
Pairwise RNA Structure Comparison with Stochastic Context-Free Grammars.
163-174
Electronic Edition (link) BibTeX
- Seiya Imoto, Takao Goto, Satoru Miyano:
Estimation of Genetic Networks and Functional Structures Between Genes by Using Bayesian Networks and Nonparametric Regression.
175-186
Electronic Edition (link) BibTeX
- Olga V. Kel-Margoulis, T. G. Ivanova, Edgar Wingender, Alexander E. Kel:
Automatic Annotation of Genomic Regulatory Sequences by Searching for Composite Clusters.
187-198
Electronic Edition (link) BibTeX
- Zufar Mulyukov, Pavel A. Pevzner:
EULER-PCR: Finishing Experiments for Repeat Resolution.
199-210
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- Luay Nakhleh, Bernard M. E. Moret, Usman Roshan, Katherine St. John, Jerry Sun, Tandy Warnow:
The Accuracy of Fast Phylogenetic Methods for Large Datasets.
211-222
Electronic Edition (link) BibTeX
- Donald J. Patterson, Ken Yasuhara, Walter L. Ruzzo:
Pre-mRNA Secondary Structure Prediction Aids Splice Site Prediction.
223-234
Electronic Edition (link) BibTeX
- Sing-Hoi Sze, Mikhail S. Gelfand, Pavel A. Pevzner:
Finding Weak Motifs in DNA Sequences.
235-246
Electronic Edition (link) BibTeX
- Wayne Volkmuth, N. Alexandrov:
Evidence for Sequence-Independent Evolutionary Traces in Genomics Data.
247-258
Electronic Edition (link) BibTeX
- Shiquan Wu, Xun Gu:
Multiple Genome Rearrangement by Reversals.
259-270
Electronic Edition (link) BibTeX
- Yoshiki Yamaguchi, Tsutomu Maruyama, Akihiko Konagaya:
High Speed Homology Search with FPGAs.
271-282
Electronic Edition (link) BibTeX
Expanding Proteomics to Glycobiology
Literature Data Mining for Biology
- Lynette Hirschman, Jong C. Park, Jun-ichi Tsujii, Cathy H. Wu, Limsoon Wong:
Literature Data Mining for Biology - Session Introduction.
323-325
Electronic Edition (link) BibTeX
- Jing Ding, Daniel Berleant, Dan Nettleton, Eve Syrkin Wurtele:
Mining MEDLINE: Abstracts, Sentences, or Phrases?
326-337
Electronic Edition (link) BibTeX
- Udo Hahn, Martin Romacker, Stefan Schulz:
Creating Knowledge Repositories from Biomedical Reports: The MEDSYNDIKATE Text Mining System.
338-349
Electronic Edition (link) BibTeX
- Gondy Leroy, Hsinchun Chen:
Filling Preposition-Based Templates to Capture Information from Medical Abstracts.
350-361
Electronic Edition (link) BibTeX
- James Pustejovsky, José M. Castaño, Jason Zhang, M. Kotecki, B. Cochran:
Robust Relational Parsing Over Biomedical Literature: Extracting Inhibit Relations.
362-373
Electronic Edition (link) BibTeX
- B. J. Stapley, Lawrence A. Kelley, Michael J. E. Sternberg:
Predicting the Sub-Cellular Location of Proteins from Text Using Support Vector Machines.
374-385
Electronic Edition (link) BibTeX
- W. John Wilbur:
A Thematic Analysis of the AIDS Literature.
386-397
Electronic Edition (link) BibTeX
Genome,
Pathway and Interaction Bioinformatics
- Peter D. Karp, Pedro Romero, Eric P. Neumann:
Genome, Pathway and Interaction Bioinformatics - Session Introduction.
398-399
Electronic Edition (link) BibTeX
- Steven Eker, Merrill Knapp, Keith Laderoute, Patrick Lincoln, José Meseguer, M. Kemal Sönmez:
Pathway Logic: Symbolic Analysis of Biological Signaling.
400-412
Electronic Edition (link) BibTeX
- Shawn M. Gomez, Andrey Rzhetsky:
Towards the Prediction of Complete Protein-Protein Interaction Networks.
413-424
Electronic Edition (link) BibTeX
- D. Guhathakurta, L. A. Schriefer, M. C. Hresko, R. H. Waterston, Gary D. Stormo:
Identifying Muscle Regulatory Elements and Genes in the Nematode Caenorhabditis Elegans.
425-436
Electronic Edition (link) BibTeX
- Alexander J. Hartemink, David K. Gifford, Tommi Jaakkola, Richard A. Young:
Combining Location and Expression Data for Principled Discovery of Genetic Regulatory Network Models.
437-449
Electronic Edition (link) BibTeX
- Michael Hucka, Andrew Finney, Herbert M. Sauro, H. Bolouri, John C. Doyle, Hiroaki Kitano:
The ERATO Systems Biology Workbench: Enabling Interaction and Exchange Between Software Tools for Computational Biology.
450-461
Electronic Edition (link) BibTeX
- Manish P. Kurhekar, Sudeshna Adak, S. Jhunjhunwala, K. Raghupathy:
Genome-Wide Pathway Analysis and Visualization Using Gene Expression Data.
462-473
Electronic Edition (link) BibTeX
- Paul Pavlidis, Darrin P. Lewis, William Stafford Noble:
Exploring Gene Expression Data with Class Scores.
474-485
Electronic Edition (link) BibTeX
- Jeff Shrager, Pat Langley, Andrew Pohorille:
Guiding Revision of Regulatory Models with Expression Data.
486-497
Electronic Edition (link) BibTeX
- Changwon Yoo, Vesteinn Thorsson, Gregory F. Cooper:
Discovery of Causal Relationships in a Gene-Regulation Pathway from a Mixture of Experimental and Observational DNA Microarray Data.
498-509
Electronic Edition (link) BibTeX
Phylogenetic Genomics and Genomic Phylogenetics
- Scott Stanley, Benjamin A. Salisbury:
Phylogenetic Genomics and Genomic Phylogenetics - Session Introduction.
510-511
Electronic Edition (link) BibTeX
- M. Zilversmit, P. O'Grady, Robert DeSalle:
Shallow Genomics, Phylogenetics, and Evolution in the Family Drosophilidae.
512-523
Electronic Edition (link) BibTeX
- Li-San Wang, Robert K. Jansen, Bernard M. E. Moret, Linda A. Raubeson, Tandy Warnow:
Fast Phylogenetic Methods for the Analysis of Genome Rearrangement Data: An Empirical Study.
524-535
Electronic Edition (link) BibTeX
- Roderic D. M. Page, J. A. Cotton:
Vertebrate Phylogenomics: Reconciled Trees and Gene Duplications.
536-547
Electronic Edition (link) BibTeX
Proteins:
Structure,
Function and Evolution
- Peter Clote, Gavin J. P. Naylor, Ziheng Yang:
Proteins: Structure, Function and Evolution - Session Introduction.
548-551
Electronic Edition (link) BibTeX
- Juan Fernandez-Recio, Maxim Totrov, Ruben Abagyan:
Screened Charge Electrostatic Model in Protein-Protein Docking Simulations.
552-565
Electronic Edition (link) BibTeX
- Christina S. Leslie, Eleazar Eskin, William Stafford Noble:
The Spectrum Kernel: A String Kernel for SVM Protein Classification.
566-575
Electronic Edition (link) BibTeX
- R. Nielsen, John P. Huelsenbeck:
Detecting Positively Selected Amino Acid Sites Using Posterior Predictive P-Values.
576-588
Electronic Edition (link) BibTeX
- Predrag Radivojac, Zoran Obradovic, Celeste J. Brown, A. Keith Dunker:
Improving Sequence Alignments For Intrinsically Disordered Proteins.
589-600
Electronic Edition (link) BibTeX
- J. A. Saunders, Kenneth D. Gibson, Harold A. Scheraga:
Ab Initio Folding of Multiple-Chain Proteins.
601-612
Electronic Edition (link) BibTeX
- J. Schonfeld, Oliver Eulenstein, Kent Vander Velden, Gavin J. P. Naylor:
Investigating Evolutionary Lines of Least Resistance Using the Inverse Protein-Folding Problem.
613-624
Electronic Edition (link) BibTeX
- Orkun Soyer, Matthew W. Dimmic, Richard R. Neubig, Richard A. Goldstein:
Using Evolutionary Methods to Study G-Protein Coupled Receptors.
625-636
Electronic Edition (link) BibTeX
- E. W. Stawiski, Yael Mandel-Gutfreund, A. C. Lowenthal, L. M. Gregoret:
Progress in Predicting Protein Function from Structure: Unique Features of O-Glycosidases.
637-648
Electronic Edition (link) BibTeX
- Jean-Philippe Vert:
Support Vector Machine Prediction of Signal Peptide Cleavage Site Using a New Class of Kernels for Strings.
649-660
Electronic Edition (link) BibTeX
- Sebastian Will:
Constraint-Based Hydrophobic Core Construction for Protein Structure Prediction in the Face-Centered-Cubic Lattice.
661-672
Electronic Edition (link) BibTeX
- Ruhong Zhou, B. David Silverman:
Detecting Native Protein Folds Among Large Decoy Sets with Hydrophobic Moment Profiling.
673-684
Electronic Edition (link) BibTeX
Copyright © Sat May 16 23:35:19 2009
by Michael Ley (ley@uni-trier.de)
