2008 |
13 | EE | Frank T. Bergmann,
Herbert M. Sauro:
Comparing simulation results of SBML capable simulators.
Bioinformatics 24(17): 1963-1965 (2008) |
2007 |
12 | EE | Ravishankar Rao Vallabhajosyula,
Herbert M. Sauro:
Stochastic simulation GUI for biochemical networks.
Bioinformatics 23(14): 1859-1861 (2007) |
2006 |
11 | EE | Herbert M. Sauro:
Innovation in software for systems biology: is there any?
Winter Simulation Conference 2006: 1586 |
10 | EE | Frank T. Bergmann,
Herbert M. Sauro:
SBW - a modular framework for systems biology.
Winter Simulation Conference 2006: 1637-1645 |
9 | EE | Ravishankar Rao Vallabhajosyula,
Herbert M. Sauro:
Complexity reduction of biochemical networks.
Winter Simulation Conference 2006: 1690-1697 |
8 | EE | Herbert M. Sauro,
David Harel,
Marta Z. Kwiatkowska,
Clifford A. Shaffer,
Adelinde M. Uhrmacher,
Michael Hucka,
Pedro Mendes,
Lena Strömbäck,
John J. Tyson:
Challenges for modeling and simulation methods in systems biology.
Winter Simulation Conference 2006: 1720-1730 |
7 | EE | Anastasia Deckard,
Frank T. Bergmann,
Herbert M. Sauro:
Supporting the SBML layout extension.
Bioinformatics 22(23): 2966-2967 (2006) |
6 | EE | Ravishankar Rao Vallabhajosyula,
Vijay Chickarmane,
Herbert M. Sauro:
Conservation analysis of large biochemical networks.
Bioinformatics 22(3): 346-353 (2006) |
5 | EE | Nicolas Le Novère,
Benjamin J. Bornstein,
Alexander Broicher,
Mélanie Courtot,
Marco Donizelli,
Harish Dharuri,
Lu Li,
Herbert M. Sauro,
Maria J. Schilstra,
Bruce E. Shapiro,
Jacky L. Snoep,
Michael Hucka:
BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems.
Nucleic Acids Research 34(Database-Issue): 689-691 (2006) |
2005 |
4 | EE | Vijay Chickarmane,
Sri R. Paladugu,
Frank T. Bergmann,
Herbert M. Sauro:
Bifurcation discovery tool.
Bioinformatics 21(18): 3688-3690 (2005) |
3 | EE | Cameron Wellock,
Vijay Chickarmane,
Herbert M. Sauro:
The SBW-CMATLAB interface.
Bioinformatics 21(6): 823-824 (2005) |
2003 |
2 | | Michael Hucka,
Andrew Finney,
Herbert M. Sauro,
H. Bolouri,
John C. Doyle,
Hiroaki Kitano,
Adam P. Arkin,
Benjamin J. Bornstein,
D. Bray,
A. Cornish-Bowden,
A. A. Cuellar,
Serge Dronov,
Ernst Dieter Gilles,
Martin Ginkel,
Victoria Gor,
Igor Goryanin,
W. J. Hedley,
T. Charles Hodgman,
J. H. Hofmeyr,
Peter J. Hunter,
Nick S. Juty,
J. L. Kasberger,
Andreas Kremling,
Ursula Kummer,
Nicolas Le Novère,
Leslie M. Loew,
D. Lucio,
Pedro Mendes,
E. Minch,
Eric Mjolsness,
Yoichi Nakayama,
M. R. Nelson,
P. F. Nielsen,
T. Sakurada,
James C. Schaff,
Bruce E. Shapiro,
Thomas Simon Shimizu,
Hugh D. Spence,
Jörg Stelling,
Koichi Takahashi,
Masaru Tomita,
J. Wagner,
J. Wang:
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models.
Bioinformatics 19(4): 524-531 (2003) |
2002 |
1 | EE | Michael Hucka,
Andrew Finney,
Herbert M. Sauro,
H. Bolouri,
John C. Doyle,
Hiroaki Kitano:
The ERATO Systems Biology Workbench: Enabling Interaction and Exchange Between Software Tools for Computational Biology.
Pacific Symposium on Biocomputing 2002: 450-461 |