Alexander J. Hartemink

2008
27	EE	Joshua W. Robinson, Alexander J. Hartemink: Non-stationary dynamic Bayesian networks. NIPS 2008: 1369-1376
26	EE	Martha L. Bulyk, Ernest Fraenkel, Alexander J. Hartemink, Yael Mandel-Gutfreund: Session Introduction. Pacific Symposium on Biocomputing 2008: 438-440
25	EE	Raluca Gordân, Alexander J. Hartemink: Using DNA Duplex Stability Information for Transcription Factor Binding Site Discovery. Pacific Symposium on Biocomputing 2008: 453-464
24	EE	Raluca Gordân, Leelavati Narlikar, Alexander J. Hartemink: A Fast, Alignment-Free, Conservation-Based Method for Transcription Factor Binding Site Discovery. RECOMB 2008: 98-111
2007
23	EE	Martha L. Bulyk, Alexander J. Hartemink, Ernest Fraenkel, Gary D. Stormo: Session Introduction. Pacific Symposium on Biocomputing 2007: 470-471
22	EE	Leelavati Narlikar, Raluca Gordân, Alexander J. Hartemink: Nucleosome Occupancy Information Improves de novo Motif Discovery. RECOMB 2007: 107-121
21	EE	Allister Bernard, David S. Vaughn, Alexander J. Hartemink: Reconstructing the Topology of Protein Complexes. RECOMB 2007: 32-46
2006
20	EE	Leelavati Narlikar, Raluca Gordân, Uwe Ohler, Alexander J. Hartemink: Informative priors based on transcription factor structural class improve de novo motif discovery. ISMB (Supplement of Bioinformatics) 2006: 384-392
19	EE	Pallavi N. Pratapa, Edward F. Patz Jr., Alexander J. Hartemink: Finding Diagnostic Biomarkers in Proteomic Spectra. Pacific Symposium on Biocomputing 2006: 279-290
18	EE	Leelavati Narlikar, Alexander J. Hartemink: Sequence features of DNA binding sites reveal structural class of associated transcription factor. Bioinformatics 22(2): 157-163 (2006)
2005
17	EE	Allister Bernard, Alexander J. Hartemink: Informative Structure Priors: Joint Learning of Dynamic Regulatory Networks from Multiple Types of Data. Pacific Symposium on Biocomputing 2005
16	EE	Alexander J. Hartemink, Eran Segal: Session Introduction: Joint Learning from Multiple Types of Genomic Data. Pacific Symposium on Biocomputing 2005
15	EE	Peng Yin, Alexander J. Hartemink: Theoretical and practical advances in genome halving. Bioinformatics 21(7): 869-879 (2005)
14	EE	Balaji Krishnapuram, Lawrence Carin, Mário A. T. Figueiredo, Alexander J. Hartemink: Sparse Multinomial Logistic Regression: Fast Algorithms and Generalization Bounds. IEEE Trans. Pattern Anal. Mach. Intell. 27(6): 957-968 (2005)
2004
13	EE	Balaji Krishnapuram, David Williams, Ya Xue, Alexander J. Hartemink, Lawrence Carin, Mário A. T. Figueiredo: On Semi-Supervised Classification. NIPS 2004
12	EE	Alexander J. Hartemink, Eran Segal: Session Introduction. Pacific Symposium on Biocomputing 2004: 262-263
11	EE	Jing Yu, V. Anne Smith, Paul P. Wang, Alexander J. Hartemink, Erich D. Jarvis: Advances to Bayesian network inference for generating causal networks from observational biological data. Bioinformatics 20(18): 3594-3603 (2004)
10	EE	Balaji Krishnapuram, Alexander J. Hartemink, Lawrence Carin, Mário A. T. Figueiredo: A Bayesian Approach to Joint Feature Selection and Classifier Design. IEEE Trans. Pattern Anal. Mach. Intell. 26(9): 1105-1111 (2004)
9	EE	Balaji Krishnapuram, Lawrence Carin, Alexander J. Hartemink: Joint Classifier and Feature Optimization for Comprehensive Cancer Diagnosis Using Gene Expression Data. Journal of Computational Biology 11(2/3): 227-242 (2004)
2003
8	EE	Peter D. Karp, Eric P. Neumann, Alexander J. Hartemink, Pedro Romero: Genome, Pathway, and Interaction Bioinformatics - Session Introduction. Pacific Symposium on Biocomputing 2003: 101-103
7	EE	V. Anne Smith, Erich D. Jarvis, Alexander J. Hartemink: Influence of Network Topology and Data Collection on Network Inference. Pacific Symposium on Biocomputing 2003: 164-175
6	EE	Balaji Krishnapuram, Lawrence Carin, Alexander J. Hartemink: Joint classifier and feature optimization for cancer diagnosis using gene expression data. RECOMB 2003: 167-175
2002
5		V. Anne Smith, Erich D. Jarvis, Alexander J. Hartemink: Evaluating functional network inference using simulations of complex biological systems. ISMB 2002: 216-224
4	EE	Alexander J. Hartemink, David K. Gifford, Tommi Jaakkola, Richard A. Young: Combining Location and Expression Data for Principled Discovery of Genetic Regulatory Network Models. Pacific Symposium on Biocomputing 2002: 437-449
3	EE	Alexander J. Hartemink, David K. Gifford, Tommi Jaakkola, Richard A. Young: Bayesian Methods for Elucidating Genetic Regulatory Networks. IEEE Intelligent Systems 17(2): 37-43 (2002)
2001
2	EE	Alexander J. Hartemink, David K. Gifford, Tommi Jaakkola, Richard A. Young: Using Graphical Models and Genomic Expression Data to Statistically Validate Models of Genetic Regulatory Networks. Pacific Symposium on Biocomputing 2001: 422-433
1999
1	EE	Stuart E. Schechter, Todd Parnell, Alexander J. Hartemink: Anonymous Authentication of Membership in Dynamic Groups. Financial Cryptography 1999: 184-195

Coauthor Index

1	Allister Bernard	[17] [21]
2	Martha L. Bulyk	[23] [26]
3	Lawrence Carin	[6] [9] [10] [13] [14]
4	Mário A. T. Figueiredo	[10] [13] [14]
5	Ernest Fraenkel	[23] [26]
6	David K. Gifford	[2] [3] [4]
7	Raluca Gordân	[20] [22] [24] [25]
8	Tommi Jaakkola	[2] [3] [4]
9	Erich D. Jarvis	[5] [7] [11]
10	Peter D. Karp	[8]
11	Balaji Krishnapuram	[6] [9] [10] [13] [14]
12	Yael Mandel-Gutfreund	[26]
13	Leelavati Narlikar	[18] [20] [22] [24]
14	Eric P. Neumann	[8]
15	Uwe Ohler	[20]
16	Todd Parnell	[1]
17	Edward F. Patz Jr.	[19]
18	Pallavi N. Pratapa	[19]
19	Joshua W. Robinson	[27]
20	Pedro Romero	[8]
21	Stuart E. Schechter	[1]
22	Eran Segal	[12] [16]
23	V. Anne Smith	[5] [7] [11]
24	Gary D. Stormo	[23]
25	David S. Vaughn	[21]
26	Paul P. Wang	[11]
27	David Williams	[13]
28	Ya Xue	[13]
29	Peng Yin	[15]
30	Richard A. Young	[2] [3] [4]
31	Jing Yu	[11]

Colors in the list of coauthors