Lior Pachter

2008
29	EE	Rahul Satija, Lior Pachter, Jotun Hein: Combining statistical alignment and phylogenetic footprinting to detect regulatory elements. Bioinformatics 24(10): 1236-1242 (2008)
2007
28	EE	Ariel S. Schwartz, Lior Pachter: Multiple alignment by sequence annealing. Bioinformatics 23(2): 24-29 (2007)
2006
27	EE	Jason Morton, Lior Pachter, Anne Shiu, Bernd Sturmfels, Oliver Wienand: Geometry of rank tests. Probabilistic Graphical Models 2006: 207-214
26	EE	Sagi Snir, Lior Pachter: Phylogenetic Profiling of Insertions and Deletions in Vertebrate Genomes. RECOMB 2006: 265-280
25	EE	Radu Mihaescu, Dan Levy, Lior Pachter: Why neighbor-joining works CoRR abs/cs/0602041: (2006)
2005
24	EE	Sourav Chatterji, Lior Pachter: Large Multiple Organism Gene Finding by Collapsed Gibbs Sampling. Journal of Computational Biology 12(6): 599-608 (2005)
2004
23	EE	Sourav Chatterji, Lior Pachter: Multiple organism gene finding by collapsed gibbs sampling. RECOMB 2004: 187-193
22	EE	Lior Pachter, David E Speyer: Reconstructing trees from subtree weights. Appl. Math. Lett. 17(6): 615-621 (2004)
21	EE	Jon D. McAuliffe, Lior Pachter, Michael I. Jordan: Multiple-sequence functional annotation and the generalized hidden Markov phylogeny. Bioinformatics 20(12): 1850-1860 (2004)
20		Kelly A. Frazer, Lior Pachter, Alexander Poliakov, Edward M. Rubin, Inna Dubchak: VISTA: computational tools for comparative genomics. Nucleic Acids Research 32(Web-Server-Issue): 273-279 (2004)
2003
19		Simon Cawley, Lior Pachter: HMM sampling and applications to gene finding and alternative splicing. ECCB 2003: 36-41
18	EE	Serafim Batzoglou, Lior Pachter: Gene Regulation - Session Introduction. Pacific Symposium on Biocomputing 2003: 3-4
17	EE	Fumei Lam, Marina Alexandersson, Lior Pachter: Picking Alignments from (Steiner) Trees. Journal of Computational Biology 10(3/4): 509-520 (2003)
16		Simon Cawley, Lior Pachter, Marina Alexandersson: SLAM web server for comparative gene finding and alignment. Nucleic Acids Research 31(13): 3507-3509 (2003)
15		Nicolas Bray, Lior Pachter: MAVID multiple alignment server. Nucleic Acids Research 31(13): 3525-3526 (2003)
14	EE	Fumei Lam, Lior Pachter: Forcing numbers of stop signs. Theor. Comput. Sci. 2-3(303): 409-416 (2003)
2002
13	EE	Inna Dubchak, Lior Pachter, Liping Wei: Genome-Wide Analysis and Comparative Genomics - Session Introduction. Pacific Symposium on Biocomputing 2002: 112-114
12	EE	Lior Pachter, Fumei Lam: Picking alignments from (steiner) trees. RECOMB 2002: 246-253
11		Inna Dubchak, Lior Pachter: The computational challenges of applying comparative-based computational methods to whole genomes. Briefings in Bioinformatics 3(1): 18-22 (2002)
10		Lior Pachter, Marina Alexandersson, Simon Cawley: Applications of Generalized Pair Hidden Markov Models to Alignment and Gene Finding Problems. Journal of Computational Biology 9(2): 389-399 (2002)
2001
9	EE	Lior Pachter, Marina Alexandersson, Simon Cawley: Applications of generalized pair hidden Markov models to alignment and gene finding problems. RECOMB 2001: 241-248
2000
8	EE	Serafim Batzoglou, Lior Pachter, Jill P. Mesirov, Bonnie Berger, Eric S. Lander: Human and mouse gene structure: comparative analysis and application to exon prediction. RECOMB 2000: 46-53
7		Chris Mayor, Michael Brudno, Jody R. Schwartz, Alexander Poliakov, Edward M. Rubin, Kelly A. Frazer, Lior Pachter, Inna Dubchak: VISTA : visualizing global DNA sequence alignments of arbitrary length. Bioinformatics 16(11): 1046-1047 (2000)
1999
6	EE	Lior Pachter, Serafim Batzoglou, Valentin I. Spitkovsky, William S. Beebee, Eric S. Lander, Bonnie Berger, Daniel J. Kleitman: A dictionary based approach for gene annotation. RECOMB 1999: 285-294
5		Lior Pachter, Serafim Batzoglou, Valentin I. Spitkovsky, E. Banks, Eric S. Lander, Daniel J. Kleitman, Bonnie Berger: A Dictionary-Based Approach for Gene Annotation. Journal of Computational Biology 6(3/4): (1999)
1998
4	EE	Daniel J. Kleitman, Lior Pachter: Finding Convex Sets Among Points in the Plane. Discrete & Computational Geometry 19(3): 405-410 (1998)
3	EE	Lior Pachter, Peter Kim: Forcing matchings on square grids. Discrete Mathematics 190(1-3): 287-294 (1998)
1997
2	EE	Lior Pachter: Constructing Status Injective Graphs. Discrete Applied Mathematics 80(1): 107-113 (1997)
1	EE	Lior Pachter: Combinatorial Approaches and Conjectures for 2-Divisibility Problems Concerning Domino Tilings of Polyominoes. Electr. J. Comb. 4(1): (1997)

Coauthor Index

1	Marina Alexandersson	[9] [10] [16] [17]
2	E. Banks	[5]
3	Serafim Batzoglou	[5] [6] [8] [18]
4	William S. Beebee	[6]
5	Bonnie Berger	[5] [6] [8]
6	Nicolas Bray	[15]
7	Michael Brudno	[7]
8	Simon Cawley	[9] [10] [16] [19]
9	Sourav Chatterji	[23] [24]
10	Inna Dubchak	[7] [11] [13] [20]
11	Kelly A. Frazer	[7] [20]
12	Jotun Hein	[29]
13	Michael I. Jordan	[21]
14	Peter Kim	[3]
15	Daniel J. Kleitman	[4] [5] [6]
16	Fumei Lam	[12] [14] [17]
17	Eric S. Lander	[5] [6] [8]
18	Dan Levy	[25]
19	Chris Mayor	[7]
20	Jon D. McAuliffe	[21]
21	Jill P. Mesirov	[8]
22	Radu Mihaescu	[25]
23	Jason Morton	[27]
24	Alexander Poliakov	[7] [20]
25	Edward M. Rubin	[7] [20]
26	Rahul Satija	[29]
27	Ariel S. Schwartz	[28]
28	Jody R. Schwartz	[7]
29	Anne Shiu	[27]
30	Sagi Snir	[26]
31	David E Speyer	[22]
32	Valentin I. Spitkovsky	[5] [6]
33	Bernd Sturmfels	[27]
34	Liping Wei	[13]
35	Oliver Wienand	[27]

Colors in the list of coauthors