Ruhong Zhou

2008
12	EE	Ruhong Zhou, Maria Eleftheriou, Chung-Chau Hon, Robert S. Germain, Ajay K. Royyuru, Bruce J. Berne: Massively parallel molecular dynamics simulations of lysozyme unfolding. IBM Journal of Research and Development 52(1-2): 19-30 (2008)
2007
11	EE	Ruhong Zhou, Laxmi Parida, Kush Kapila, Sudhir P. Mudur: PROTERAN: animated terrain evolution for visual analysis of patterns in protein folding trajectory. Bioinformatics 23(1): 99-106 (2007)
2006
10	EE	Maria Eleftheriou, Aleksandr Rayshubskiy, Jed W. Pitera, Blake G. Fitch, Ruhong Zhou, Robert S. Germain: Parallel implementation of the replica exchange molecular dynamics algorithm on Blue Gene/L. IPDPS 2006
9	EE	Blake G. Fitch, Aleksandr Rayshubskiy, Maria Eleftheriou, T. J. Christopher Ward, Mark Giampapa, Yuriy Zhestkov, Michael Pitman, Frank Suits, Alan Grossfield, Jed W. Pitera, William C. Swope, Ruhong Zhou, Scott Feller, Robert S. Germain: Blue Matter: Strong Scaling of Molecular Dynamics on Blue Gene/L. International Conference on Computational Science (2) 2006: 846-854
8	EE	Ruhong Zhou, Ajay K. Royyuru, Prasanna Athma, Frank Suits, B. David Silverman: Magnitude and spatial orientation of the hydrophobic moments of multi-domain proteins. IJBRA 2(2): 161-176 (2006)
2005
7	EE	J. Feng, Laxmi Parida, Ruhong Zhou: Protein folding trajectory analysis using patterned clusters. APBC 2005: 95-104
6	EE	Lei Ye, Huajun Chen, Ting Liu, Zhaohui Wu, Jingyuan Li, Ruhong Zhou: A Wavelet Approach for the Analysis of Folding Trajectory of Protein Trp-cage. J. Bioinformatics and Computational Biology 3(6): 1351-1370 (2005)
2003
5	EE	Blake G. Fitch, Robert S. Germain, Mark P. Mendell, Jed W. Pitera, Michael Pitman, Aleksandr Rayshubskiy, Yuk Yin Sham, Frank Suits, William C. Swope, T. J. Christopher Ward, Yuriy Zhestkov, Ruhong Zhou: Blue Matter, an application framework for molecular simulation on Blue Gene. J. Parallel Distrib. Comput. 63(7-8): 759-773 (2003)
4	EE	George A. Kaminski, Richard A. Friesner, Ruhong Zhou: A computationally inexpensive modification of the point dipole electrostatic polarization model for molecular simulations. Journal of Computational Chemistry 24(3): 267-276 (2003)
2002
3	EE	Ruhong Zhou, B. David Silverman: Detecting Native Protein Folds Among Large Decoy Sets with Hydrophobic Moment Profiling. Pacific Symposium on Biocomputing 2002: 673-684
2	EE	George A. Kaminski, Harry A. Stern, Bruce J. Berne, Richard A. Friesner, Yixiang X. Cao, Robert B. Murphy, Ruhong Zhou, Thomas A. Halgren: Development of a polarizable force field for proteins via ab initio quantum chemistry: First generation model and gas phase tests. Journal of Computational Chemistry 23(16): 1515-1531 (2002)
2001
1	EE	Frances E. Allen, George S. Almasi, Wanda Andreoni, Daniel K. Beece, Bruce J. Berne, Arthur A. Bright, José R. Brunheroto, Calin Cascaval, José G. Castaños, Paul Coteus, Paul Crumley, Alessandro Curioni, Monty Denneau, Wilm E. Donath, Maria Eleftheriou, Blake G. Fitch, Bruce M. Fleischer, Christos J. Georgiou, Robert S. Germain, Mark Giampapa, Donna L. Gresh, Manish Gupta, Ruud A. Haring, C. T. Howard Ho, Peter H. Hochschild, Susan Flynn Hummel, Tiziana Jonas, Derek Lieber, Glenn J. Martyna, Kiran K. Maturu, José E. Moreira, Dennis M. Newns, Matthew Newton, Robert Philhower, Thomas Picunko, Jed W. Pitera, Michael Pitman, Rick A. Rand, Ajay K. Royyuru, Valentina Salapura, Alda Sanomiya, Rahul S. Shah, Yuk Yin Sham, Sarabjeet Singh, Marc Snir, Frank Suits, Richard A. Swetz, William C. Swope, Nagesh K. Vishnumurthy, T. J. Christopher Ward, Henry S. Warren Jr., Ruhong Zhou: Blue Gene: A vision for protein science using a petaflop supercomputer. IBM Systems Journal 40(2): 310-327 (2001)

Coauthor Index

1	Frances E. Allen	[1]
2	George Almási (George S. Almasi)	[1]
3	Wanda Andreoni	[1]
4	Prasanna Athma	[8]
5	Daniel K. Beece	[1]
6	Bruce J. Berne	[1] [2] [12]
7	Arthur A. Bright	[1]
8	José R. Brunheroto	[1]
9	Yixiang X. Cao	[2]
10	Calin Cascaval	[1]
11	José G. Castaños	[1]
12	Huajun Chen	[6]
13	Paul Coteus	[1]
14	Paul Crumley	[1]
15	Alessandro Curioni	[1]
16	Monty Denneau	[1]
17	Wilm E. Donath	[1]
18	Maria Eleftheriou	[1] [9] [10] [12]
19	Scott Feller	[9]
20	J. Feng	[7]
21	Blake G. Fitch	[1] [5] [9] [10]
22	Bruce M. Fleischer	[1]
23	Richard A. Friesner	[2] [4]
24	Christos J. Georgiou	[1]
25	Robert S. Germain	[1] [5] [9] [10] [12]
26	Mark Giampapa	[1] [9]
27	Donna L. Gresh	[1]
28	Alan Grossfield	[9]
29	Manish Gupta	[1]
30	Thomas A. Halgren	[2]
31	Ruud A. Haring	[1]
32	C. T. Howard Ho (Howard Ho, Ching-Tien Ho)	[1]
33	Peter H. Hochschild	[1]
34	Chung-Chau Hon	[12]
35	Susan Flynn Hummel	[1]
36	Tiziana Jonas	[1]
37	George A. Kaminski	[2] [4]
38	Kush Kapila	[11]
39	Jingyuan Li	[6]
40	Derek Lieber	[1]
41	Ting Liu	[6]
42	Glenn J. Martyna	[1]
43	Kiran K. Maturu	[1]
44	Mark P. Mendell	[5]
45	José E. Moreira	[1]
46	Sudhir P. Mudur	[11]
47	Robert B. Murphy	[2]
48	Dennis M. Newns	[1]
49	Matthew Newton	[1]
50	Laxmi Parida	[7] [11]
51	Robert Philhower	[1]
52	Thomas Picunko	[1]
53	Jed W. Pitera	[1] [5] [9] [10]
54	Michael Pitman	[1] [5] [9]
55	Rick A. Rand	[1]
56	Aleksandr Rayshubskiy	[5] [9] [10]
57	Ajay K. Royyuru	[1] [8] [12]
58	Valentina Salapura	[1]
59	Alda Sanomiya	[1]
60	Rahul S. Shah	[1]
61	Yuk Yin Sham	[1] [5]
62	B. David Silverman	[3] [8]
63	Sarabjeet Singh	[1]
64	Marc Snir	[1]
65	Harry A. Stern	[2]
66	Frank Suits	[1] [5] [8] [9]
67	Richard A. Swetz	[1]
68	William C. Swope	[1] [5] [9]
69	Nagesh K. Vishnumurthy	[1]
70	T. J. Christopher Ward	[1] [5] [9]
71	Henry S. Warren Jr.	[1]
72	Zhaohui Wu	[6]
73	Lei Ye	[6]
74	Yuriy Zhestkov	[5] [9]

Colors in the list of coauthors