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Cathy H. Wu

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2008
54EEKatherine G. Herbert, Junilda Spirollari, Jason Tsong-Li Wang, William H. Piel, John D. Westbrook, Winona C. Barker, Zhang-Zhi Hu, Cathy H. Wu: Bioinformatic Databases. Wiley Encyclopedia of Computer Science and Engineering 2008
53EEC. Zhang, Oswald Crasta, S. Cammer, Rebecca Will, Ron Kenyon, D. Sullivan, Q. Yu, W. Sun, R. Jha, D. Liu, Tian Xue, Y. Zhang, M. Moore, Peter B. McGarvey, Hongzhan Huang, Yongxing Chen, J. Zhang, Raja Mazumder, Cathy H. Wu, Bruno W. S. Sobral: An emerging cyberinfrastructure for biodefense pathogen and pathogen-host data. Nucleic Acids Research 36(Database-Issue): 884-891 (2008)
2007
52EEHongfang Liu, Manabu Torii, Zhang-Zhi Hu, Cathy H. Wu: Mapping Gene/Protein Names in Free Text to Biomedical Databases. ICDM Workshops 2007: 101-106
51EEBaris E. Suzek, Hongzhan Huang, Peter B. McGarvey, Raja Mazumder, Cathy H. Wu: UniRef: comprehensive and non-redundant UniProt reference clusters. Bioinformatics 23(10): 1282-1288 (2007)
50EEPeng Qiu, Z. Jane Wang, K. J. Ray Liu, Zhang-Zhi Hu, Cathy H. Wu: Dependence network modeling for biomarker identification. Bioinformatics 23(2): 198-206 (2007)
49EENicola J. Mulder, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Peer Bork, Virginie Buillard, Lorenzo Cerutti, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Louise Daugherty, Mark Dibley, Robert D. Finn, Wolfgang Fleischmann, Julian Gough, Daniel H. Haft, Nicolas Hulo, Sarah Hunter, Daniel Kahn, Alexander Kanapin, Anish Kejariwal, Alberto Labarga, Petra S. Langendijk-Genevaux, David Lonsdale, Rodrigo Lopez, Ivica Letunic, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Jaina Mistry, Alex Mitchell, Anastasia N. Nikolskaya, Sandra E. Orchard, Christine A. Orengo, Robert Petryszak, Jeremy D. Selengut, Christian J. A. Sigrist, Paul D. Thomas, Franck Valentin, Derek Wilson, Cathy H. Wu, Corin Yeats: New developments in the InterPro database. Nucleic Acids Research 35(Database-Issue): 224-228 (2007)
2006
48EEHongfang Liu, Zhang-Zhi Hu, Jian Zhang, Cathy H. Wu: BioThesaurus: a web-based thesaurus of protein and gene names. Bioinformatics 22(1): 103-105 (2006)
47EEX. Yuan, Zhang-Zhi Hu, H. T. Wu, Manabu Torii, Meenakshi Narayanaswamy, K. E. Ravikumar, K. Vijay-Shanker, Cathy H. Wu: An online literature mining tool for protein phosphorylation. Bioinformatics 22(13): 1668-1669 (2006)
46EEBo Han, Zoran Obradovic, Zhang-Zhi Hu, Cathy H. Wu, Slobodan Vucetic: Substring selection for biomedical document classification. Bioinformatics 22(17): 2136-2142 (2006)
45EECathy H. Wu, Rolf Apweiler, Amos Bairoch, Darren A. Natale, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, Maria Jesus Martin, Raja Mazumder, Claire O'Donovan, Nicole Redaschi, Baris E. Suzek: The Universal Protein Resource (UniProt): an expanding universe of protein information. Nucleic Acids Research 34(Database-Issue): 187-191 (2006)
2005
44EEHongfang Liu, Zhang-Zhi Hu, Cathy H. Wu: Dynamically Generating a Protein Entity Dictionary Using Online Resources. ACL 2005
43EEHongfang Liu, Zhang-Zhi Hu, Cathy H. Wu: DynGO: a tool for visualizing and mining of Gene Ontology and its associations. BMC Bioinformatics 6: 201 (2005)
42EERaja Mazumder, Darren A. Natale, Sudhir Murthy, Rathi Thiagarajan, Cathy H. Wu: Computational identification of strain-, species- and genus-specific proteins. BMC Bioinformatics 6: 279 (2005)
41EEZhang-Zhi Hu, Meenakshi Narayanaswamy, K. E. Ravikumar, K. Vijay-Shanker, Cathy H. Wu: Literature mining and database annotation of protein phosphorylation using a rule-based system. Bioinformatics 21(11): 2759-2765 (2005)
40EEAmos Bairoch, Rolf Apweiler, Cathy H. Wu, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, María J. Martín, Darren A. Natale, Claire O'Donovan, Nicole Redaschi, Lai-Su L. Yeh: The Universal Protein Resource (UniProt). Nucleic Acids Research 33(Database-Issue): 154-159 (2005)
39EENicola J. Mulder, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Paul Bradley, Peer Bork, Phillip Bucher, Lorenzo Cerutti, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Wolfgang Fleischmann, Julian Gough, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, David Lonsdale, Rodrigo Lopez, Ivica Letunic, Martin Madera, John Maslen, Jennifer McDowall, Alex Mitchell, Anastasia N. Nikolskaya, Sandra E. Orchard, Marco Pagni, Chris P. Ponting, Emmanuel Quevillon, Jeremy D. Selengut, Christian J. A. Sigrist, Ville Silventoinen, David J. Studholme, Robert Vaughan, Cathy H. Wu: InterPro, progress and status in 2005. Nucleic Acids Research 33(Database-Issue): 201-205 (2005)
2004
38EECathy H. Wu, Hongzhan Huang, Anastasia N. Nikolskaya, Zhang-Zhi Hu, Winona C. Barker: The iProClass integrated database for protein functional analysis. Computational Biology and Chemistry 28(1): 87-96 (2004)
37EEZhang-Zhi Hu, Inderjeet Mani, Vincent Hermoso, Hongfang Liu, Cathy H. Wu: iProLINK: an integrated protein resource for literature mining. Computational Biology and Chemistry 28(5-6): 409-416 (2004)
36EEHongzhan Huang, Zhang-Zhi Hu, Baris E. Suzek, Cathy H. Wu: The PIR integrated protein databases and data retrieval system. Data Science Journal 3: 163-174 (2004)
35 Cathy H. Wu, Anastasia N. Nikolskaya, Hongzhan Huang, Lai-Su L. Yeh, Darren A. Natale, C. R. Vinayaka, Zhang-Zhi Hu, Raja Mazumder, Sandeep Kumar, Panagiotis Kourtesis, Robert S. Ledley, Baris E. Suzek, Leslie Arminski, Yongxing Chen, Jian Zhang, Jorge Louie Cardenas, Sehee Chung, Jorge Castro-Alvear, Georgi Dinkov, Winona C. Barker: PIRSF: family classification system at the Protein Information Resource. Nucleic Acids Research 32(Database-Issue): 112-114 (2004)
34 Rolf Apweiler, Amos Bairoch, Cathy H. Wu, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, Maria Jesus Martin, Darren A. Natale, Claire O'Donovan, Nicole Redaschi, Lai-Su L. Yeh: UniProt: the Universal Protein knowledgebase. Nucleic Acids Research 32(Database-Issue): 115-119 (2004)
33EEKatherine G. Herbert, Narain H. Gehani, William H. Piel, Jason Tsong-Li Wang, Cathy H. Wu: BIO-AJAX: An Extensible Framework for Biological Data Cleaning. SIGMOD Record 33(2): 51-57 (2004)
2003
32 Jason Tsong-Li Wang, Cathy H. Wu, Paul P. Wang: Computational Biology and Genome Informatics World Scientific 2003
31EELynette Hirschman, Carol Friedman, Robin McEntire, Cathy H. Wu: Linking Biomedical Language, Information and Knowledge - Session Introduction. Pacific Symposium on Biocomputing 2003: 388-390
30 Cathy H. Wu: The Protein Information Resource for Functional Genomics and Proteomics. Computational Biology and Genome Informatics 2003: 117-137
29EECathy H. Wu, Hongzhan Huang, Lai-Su L. Yeh, Winona C. Barker: Protein family classification and functional annotation. Computational Biology and Chemistry 27(1): 37-47 (2003)
28 Cathy H. Wu, Lai-Su L. Yeh, Hongzhan Huang, Leslie Arminski, Jorge Castro-Alvear, Yongxing Chen, Zhang-Zhi Hu, Panagiotis Kourtesis, Robert S. Ledley, Baris E. Suzek, C. R. Vinayaka, Jian Zhang, Winona C. Barker: The Protein Information Resource. Nucleic Acids Research 31(1): 345-347 (2003)
27 Hongzhan Huang, Winona C. Barker, Yongxing Chen, Cathy H. Wu: iProClass: an integrated database of protein family, function and structure information. Nucleic Acids Research 31(1): 390-392 (2003)
2002
26EELynette Hirschman, Jong C. Park, Jun-ichi Tsujii, Cathy H. Wu, Limsoon Wong: Literature Data Mining for Biology - Session Introduction. Pacific Symposium on Biocomputing 2002: 323-325
25 Lynette Hirschman, Jong C. Park, Jun-ichi Tsujii, Limsoon Wong, Cathy H. Wu: Accomplishments and challenges in literature data mining for biology. Bioinformatics 18(12): 1553-1561 (2002)
24 Cathy H. Wu, Hongzhan Huang, Leslie Arminski, Jorge Castro-Alvear, Yongxing Chen, Zhang-Zhi Hu, Robert S. Ledley, Kali C. Lewis, Hans-Werner Mewes, Bruce C. Orcutt, Baris E. Suzek, Akira Tsugita, C. R. Vinayaka, Lai-Su L. Yeh, Jian Zhang, Winona C. Barker: The Protein Information Resource: an integrated public resource of functional annotation of proteins. Nucleic Acids Research 30(1): 35-37 (2002)
2001
23EEJason Tsong-Li Wang, Qicheng Ma, Dennis Shasha, Cathy H. Wu: New techniques for extracting features from protein sequences. IBM Systems Journal 40(2): 426-441 (2001)
22 Qicheng Ma, Jason Tsong-Li Wang, Dennis Shasha, Cathy H. Wu: DNA sequence classification via an expectation maximization algorithm and neural networks: a case study. IEEE Transactions on Systems, Man, and Cybernetics, Part C 31(4): 468-475 (2001)
21 Winona C. Barker, John S. Garavelli, Zhenglin Hou, Hongzhan Huang, Robert S. Ledley, Peter B. McGarvey, Hans-Werner Mewes, Bruce C. Orcutt, Friedhelm Pfeiffer, Akira Tsugita, C. R. Vinayaka, Chunlin Xiao, Lai-Su L. Yeh, Cathy H. Wu: Protein Information Resource: a community resource for expert annotation of protein data. Nucleic Acids Research 29(1): 29-32 (2001)
20 Cathy H. Wu, Chunlin Xiao, Zhenglin Hou, Hongzhan Huang, Winona C. Barker: iProClass: an integrated, comprehensive and annotated protein classification database. Nucleic Acids Research 29(1): 52-54 (2001)
2000
19EEJason Tsong-Li Wang, Qicheng Ma, Dennis Shasha, Cathy H. Wu: Application of neural networks to biological data mining: a case study in protein sequence classification. KDD 2000: 305-309
18 Peter B. McGarvey, Hongzhan Huang, Winona C. Barker, Bruce C. Orcutt, John S. Garavelli, Geetha Y. Srinivasarao, Lai-Su L. Yeh, Chunlin Xiao, Cathy H. Wu: PIR: a new resource for bioinformatics. Bioinformatics 16(3): 290-291 (2000)
17 Hongzhan Huang, Chunlin Xiao, Cathy H. Wu: ProClass protein family database. Nucleic Acids Research 28(1): 273-276 (2000)
16 Winona C. Barker, John S. Garavelli, Hongzhan Huang, Peter B. McGarvey, Bruce C. Orcutt, Geetha Y. Srinivasarao, Chunlin Xiao, Lai-Su L. Yeh, Robert S. Ledley, Joseph F. Janda, Friedhelm Pfeiffer, Hans-Werner Mewes, Akira Tsugita, Cathy H. Wu: The Protein Information Resource (PIR). Nucleic Acids Research 28(1): 41-44 (2000)
1999
15 Cathy H. Wu, Hongzhan Huang, Jerry McLarty: Gene Family Identification Network Design for Protein Sequence Analysis. International Journal on Artificial Intelligence Tools 8(4): 419-432 (1999)
14 Cathy H. Wu, Sailaja Shivakumar, Hongzhan Huang: ProClass Protein Family Database. Nucleic Acids Research 27(1): 272-274 (1999)
13 Winona C. Barker, John S. Garavelli, Peter B. McGarvey, Christopher R. Marzec, Bruce C. Orcutt, Geetha Y. Srinivasarao, Lai-Su L. Yeh, Robert S. Ledley, Hans-Werner Mewes, Friedhelm Pfeiffer, Akira Tsugita, Cathy H. Wu: The PIR-International Protein Sequence Database. Nucleic Acids Research 27(1): 39-43 (1999)
1998
12 Cathy H. Wu, Sailaja Shivakumar, Chittari V. Shivakumar, Sheng-Chih Chen: GeneFIND web server for protein family identification and information retrieval. Bioinformatics 14(2): 223-224 (1998)
1997
11 Cathy H. Wu, Hsi-Lien Chen, Sheng-Chih Chen: Counter-Propagation Neural Networks for Molecular Sequence Classification: Supervised LVQ and Dynamic Node Allocation. Appl. Intell. 7(1): 27-38 (1997)
10EECathy H. Wu: Artificial Neural Networks for Molecular Sequence Analysis. Computers & Chemistry 21(4): 237-255 (1997)
1996
9 Cathy H. Wu, S. Zhao, H.-L. Chen, C. J. Lo, Jerry McLarty: Motif identification neural design for rapid and sensitive protein family search. Computer Applications in the Biosciences 12(2): 109-118 (1996)
8 Cathy H. Wu, S. Zhao, H.-L. Chen: A Protein Class Database Organized with ProSite Protein Groups and PIR Superfamilies. Journal of Computational Biology 3(4): 547-562 (1996)
1995
7 Cathy H. Wu, Michael W. Berry, Sailaja Shivakumar: Neural Networks for Full-Scale Protein Sequence Classification: Sequence Encoding with Singular Value Decomposition. Machine Learning 21(1-2): 177-193 (1995)
1993
6 Cathy H. Wu, Michael W. Berry, Yuk-Shing Fung, Jerry McLarty: Neural Networks for Molecular Sequence Classification. ISMB 1993: 429-437
5EECathy H. Wu: Classification Neural Networks for Rapid Sequence Annotation and Automated Database Organization. Computers & Chemistry 17(2): 219-227 (1993)
1992
4 Cathy H. Wu, George M. Whitson, Chun-Tse Hsiao, Cheng-Fu Huang: Classification Artificial Neural Systems for Genome Research. SC 1992: 797-803
1991
3EECathy H. Wu, Tzx-Chung Chang: Protein Classification Using a Neural Network Database System. Conference on Analysis of Neural Network Applications 1991: 29-41
1990
2EECathy H. Wu, George M. Whitson: Artificial Neural System for Gene Classification Using a Domain Database. ACM Conference on Computer Science 1990: 288-292
1EEGeorge M. Whitson, Cathy H. Wu, Pam Taylor: Using an Artificial Neural System to Determine the Knowledge Base of an Expert System. SIGSMALL/PC Symposium 1990: 268-270

Coauthor Index

1Rolf Apweiler [34] [39] [40] [45] [49]
2Leslie Arminski [24] [28] [35]
3Terri K. Attwood (Teresa K. Attwood) [39] [49]
4Amos Bairoch [34] [39] [40] [45] [49]
5Winona C. Barker [13] [16] [18] [20] [21] [24] [27] [28] [29] [34] [35] [38] [40] [45] [54]
6Alex Bateman [39] [49]
7Michael W. Berry [6] [7]
8David Binns [39] [49]
9Brigitte Boeckmann [34] [40] [45]
10Peer Bork [39] [49]
11Paul Bradley [39]
12Phillip Bucher [39]
13Virginie Buillard [49]
14S. Cammer [53]
15Jorge Louie Cardenas [35]
16Jorge Castro-Alvear [24] [28] [35]
17Lorenzo Cerutti [39] [49]
18Tzx-Chung Chang [3]
19H.-L. Chen [8] [9]
20Hsi-Lien Chen [11]
21Sheng-Chih Chen [11] [12]
22Yongxing Chen [24] [27] [28] [35] [53]
23Sehee Chung [35]
24Richard R. Copley [39] [49]
25Emmanuel Courcelle [39] [49]
26Oswald Crasta [53]
27Ujjwal Das [39] [49]
28Louise Daugherty [49]
29Mark Dibley [49]
30Georgi Dinkov [35]
31Richard Durbin [39]
32Serenella Ferro [34] [40] [45]
33Robert D. Finn [49]
34Wolfgang Fleischmann [39] [49]
35Carol Friedman [31]
36Yuk-Shing Fung [6]
37John S. Garavelli [13] [16] [18] [21]
38Elisabeth Gasteiger [34] [40] [45]
39Narain H. Gehani [33]
40Julian Gough [39] [49]
41Daniel H. Haft [39] [49]
42Bo Han [46]
43Nicola Harte [39]
44Katherine G. Herbert [33] [54]
45Vincent Hermoso [37]
46Lynette Hirschman [25] [26] [31]
47Zhenglin Hou [20] [21]
48Chun-Tse Hsiao [4]
49Zhang-Zhi Hu [24] [28] [35] [36] [37] [38] [41] [43] [44] [46] [47] [48] [50] [52] [54]
50Cheng-Fu Huang [4]
51Hongzhan Huang [14] [15] [16] [17] [18] [20] [21] [24] [27] [28] [29] [34] [35] [36] [38] [40] [45] [51] [53]
52Nicolas Hulo [39] [49]
53Sarah Hunter [49]
54Joseph F. Janda [16]
55R. Jha [53]
56Daniel Kahn [39] [49]
57Alexander Kanapin [39] [49]
58Anish Kejariwal [49]
59Ron Kenyon [53]
60Panagiotis Kourtesis [28] [35]
61Maria Krestyaninova [39]
62Sandeep Kumar [35]
63Alberto Labarga [49]
64Petra S. Langendijk-Genevaux [49]
65Robert S. Ledley [13] [16] [21] [24] [28] [35]
66Ivica Letunic [39] [49]
67Kali C. Lewis [24]
68D. Liu [53]
69Hongfang Liu [37] [43] [44] [48] [52]
70K. J. Ray Liu [50]
71C. J. Lo [9]
72David Lonsdale [39] [49]
73Rodrigo Lopez [34] [39] [40] [45] [49]
74Qicheng Ma [19] [22] [23]
75Martin Madera [39] [49]
76Michele Magrane [34] [40] [45]
77Inderjeet Mani [37]
78María J. Martín [40]
79Maria Jesus Martin [34] [45]
80Christopher R. Marzec [13]
81John Maslen [39] [49]
82Raja Mazumder [35] [42] [45] [51] [53]
83Craig McAnulla [49]
84Jennifer McDowall [39] [49]
85Robin McEntire [31]
86Peter B. McGarvey [13] [16] [18] [21] [51] [53]
87Jerry McLarty [6] [9] [15]
88Hans-Werner Mewes [13] [16] [21] [24]
89Jaina Mistry [49]
90Alex Mitchell [39] [49]
91M. Moore [53]
92Nicola J. Mulder [39] [49]
93Sudhir Murthy [42]
94Meenakshi Narayanaswamy [41] [47]
95Darren A. Natale [34] [35] [40] [42] [45]
96Anastasia N. Nikolskaya [35] [38] [39] [49]
97Claire O'Donovan [34] [40] [45]
98Zoran Obradovic [46]
99Sandra E. Orchard [39] [49]
100Bruce C. Orcutt [13] [16] [18] [21] [24]
101Christine A. Orengo [49]
102Marco Pagni [39]
103Jong C. Park [25] [26]
104Robert Petryszak [49]
105Friedhelm Pfeiffer [13] [16] [21]
106William H. Piel [33] [54]
107Chris P. Ponting [39]
108Peng Qiu [50]
109Emmanuel Quevillon [39]
110K. E. Ravikumar [41] [47]
111Nicole Redaschi [34] [40] [45]
112Jeremy D. Selengut [39] [49]
113Dennis Shasha [19] [22] [23]
114Chittari V. Shivakumar [12]
115Sailaja Shivakumar [7] [12] [14]
116Christian J. A. Sigrist [39] [49]
117Ville Silventoinen [39]
118Bruno W. S. Sobral [53]
119Junilda Spirollari [54]
120Geetha Y. Srinivasarao [13] [16] [18]
121David J. Studholme [39]
122D. Sullivan [53]
123W. Sun [53]
124Baris E. Suzek [24] [28] [35] [36] [45] [51]
125Pam Taylor [1]
126Rathi Thiagarajan [42]
127Paul D. Thomas [49]
128Manabu Torii [47] [52]
129Akira Tsugita [13] [16] [21] [24]
130Jun-ichi Tsujii [25] [26]
131Franck Valentin [49]
132Robert Vaughan [39]
133K. Vijay-Shanker [41] [47]
134C. R. Vinayaka [21] [24] [28] [35]
135Slobodan Vucetic [46]
136Jason Tsong-Li Wang (Jason T. L. Wang) [19] [22] [23] [32] [33] [54]
137Paul P. Wang [32]
138Z. Jane Wang [50]
139John D. Westbrook [54]
140George M. Whitson [1] [2] [4]
141Rebecca Will [53]
142Derek Wilson [49]
143Limsoon Wong [25] [26]
144H. T. Wu [47]
145Chunlin Xiao [16] [17] [18] [20] [21]
146Tian Xue [53]
147Corin Yeats [49]
148Lai-Su L. Yeh [13] [16] [18] [21] [24] [28] [29] [34] [35] [40]
149Q. Yu [53]
150X. Yuan [47]
151C. Zhang [53]
152J. Zhang [53]
153Jian Zhang [24] [28] [35] [48]
154Y. Zhang [53]
155S. Zhao [8] [9]

Colors in the list of coauthors

Copyright © Sun May 17 03:24:02 2009 by Michael Ley (ley@uni-trier.de)