2009 | ||
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36 | EE | Mikhail S. Gelfand, Alexei E. Kazakov, Yuri D. Korostelev, Olga N. Laikova, Andrey A. Mironov, Aleksandra B. Rakhmaninova, Dmitry A. Ravcheev, Dmitry A. Rodionov, Alexei G. Vitreschak: Evolution of Regulatory Systems in Bacteria (Invited Keynote Talk). ISBRA 2009: 1-4 |
2008 | ||
35 | EE | Natalia V. Sernova, Mikhail S. Gelfand: Identification of replication origins in prokaryotic genomes. Briefings in Bioinformatics 9(5): 376-391 (2008) |
2007 | ||
34 | EE | Ekaterina O. Ermakova, Ramil N. Nurtdinov, Mikhail S. Gelfand: Overlapping Alternative donor splice Sites in the Human genome. J. Bioinformatics and Computational Biology 5(5): 991-1004 (2007) |
33 | EE | Alexei E. Kazakov, Michael J. Cipriano, Pavel S. Novichkov, Simon Minovitsky, Dmitry V. Vinogradov, Adam Arkin, Andrey A. Mironov, Mikhail S. Gelfand, Inna Dubchak: RegTransBase - a database of regulatory sequences and interactions in a wide range of prokaryotic genomes. Nucleic Acids Research 35(Database-Issue): 407-412 (2007) |
2006 | ||
32 | EE | Nataliya S. Sadovskaya, Roman A. Sutormin, Mikhail S. Gelfand: Recognition of Transmembrane Segments in Proteins: Review and Consistency-based Benchmarking of Internet Servers. J. Bioinformatics and Computational Biology 4(5): 1033-1056 (2006) |
31 | EE | Galina Yu. Kovaleva, Georgii A. Bazykin, Michael Brudno, Mikhail S. Gelfand: Comparative Genomics of Transcriptional Regulation in Yeasts and its Application to Identification of a Candidate Alpha-isopropylmalate Transporter. J. Bioinformatics and Computational Biology 4(5): 981-998 (2006) |
2005 | ||
30 | EE | A. D. Neverov, Irena I. Artamonova, Ramil N. Nurtdinov, Dmitrij Frishman, Mikhail S. Gelfand, Andrey A. Mironov: Alternative splicing and protein function. BMC Bioinformatics 6: 266 (2005) |
29 | EE | Alexander V. Favorov, Mikhail S. Gelfand, Anna V. Gerasimova, Dmitry A. Ravcheev, Andrey A. Mironov, Vsevolod Makeev: A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length. Bioinformatics 21(10): 2240-2245 (2005) |
28 | EE | Irena I. Artamonova, Goar Frishman, Mikhail S. Gelfand, Dmitrij Frishman: Mining sequence annotation databanks for association patterns. Bioinformatics 21(S3): 57 (2005) |
27 | EE | Anna V. Gerasimova, Mikhail S. Gelfand: Evolution of the Nadr Regulon in Enterobacteriaceae. J. Bioinformatics and Computational Biology 3(4): 1007-1019 (2005) |
2004 | ||
26 | EE | Marc N. Offman, Ramil N. Nurtdinov, Mikhail S. Gelfand, Dmitrij Frishman: No statistical support for correlation between the positions of protein interaction sites and alternatively spliced regions. BMC Bioinformatics 5: 41 (2004) |
25 | Olga V. Kalinina, Pavel S. Novichkov, Andrey A. Mironov, Mikhail S. Gelfand, Aleksandra B. Rakhmaninova: SDPpred: a tool for prediction of amino acid residues that determine differences in functional specificity of homologous proteins. Nucleic Acids Research 32(Web-Server-Issue): 424-428 (2004) | |
2003 | ||
24 | EE | Eleazar Eskin, Uri Keich, Mikhail S. Gelfand, Pavel A. Pevzner: Genome-Wide Analysis of Bacterial Promoter Regions. Pacific Symposium on Biocomputing 2003: 29-40 |
23 | EE | Olga V. Kalinina, Vsevolod Makeev, Roman A. Sutormin, Mikhail S. Gelfand, Aleksandra B. Rakhmaninova: The channel in transporters is formed by residues that are rare in transmembrane helices. In Silico Biology 3: 17 (2003) |
22 | EE | Alexei E. Kazakov, Olga Vassieva, Mikhail S. Gelfand, Andrei Osterman, Ross A. Overbeek: Bioinformatics classification and functional analysis of PhoH homologs. In Silico Biology 3: 2 (2003) |
21 | EE | Ludmila V. Danilova, Vassily A. Lyubetsky, Mikhail S. Gelfand: An algorithm for identification of regulatory signals in unaligned DNA sequences, its testing and parallel implementation. In Silico Biology 3: 4 (2003) |
2002 | ||
20 | EE | Sing-Hoi Sze, Mikhail S. Gelfand, Pavel A. Pevzner: Finding Weak Motifs in DNA Sequences. Pacific Symposium on Biocomputing 2002: 235-246 |
19 | M. V. Baytaluk, Mikhail S. Gelfand, Andrey A. Mironov: Exact mapping of prokaryotic gene starts. Briefings in Bioinformatics 3(2): 181-194 (2002) | |
18 | Julia V. Ponomarenko, Galina Orlova, Anatoly S. Frolov, Mikhail S. Gelfand, Mikhail P. Ponomarenko: SELEX_DB: a database on in vitro selected oligomers adapted for recognizing natural sites and for analyzing both SNPs and site-directed mutagenesis data. Nucleic Acids Research 30(1): 195-199 (2002) | |
2001 | ||
17 | Andrey A. Mironov, Pavel S. Novichkov, Mikhail S. Gelfand: Pro-Frame: similarity-based gene recognition in eukaryotic DNA sequences with errors. Bioinformatics 17(1): 13-15 (2001) | |
16 | Pavel S. Novichkov, Mikhail S. Gelfand, Andrey A. Mironov: Gene recognition in eukaryotic DNA by comparison of genomic sequences. Bioinformatics 17(11): 1011-1018 (2001) | |
2000 | ||
15 | EE | Vsevolod Makeev, Vasily Ramensky, Mikhail S. Gelfand, Mikhail A. Roytberg, Vladimir G. Tumanyan: Bayesian Approach to DNA Segmentation into Regions with Different Average Nucleotide Composition. JOBIM 2000: 57-73 |
14 | Mikhail S. Gelfand, Pavel S. Novichkov, Elena S. Novichkova, Andrey A. Mironov: Comparative Analysis of Regulatory Patterns in Bacterial Genomes. Briefings in Bioinformatics 1(4): 357-371 (2000) | |
13 | I. Dralyuk, Michael Brudno, Mikhail S. Gelfand, Manfred Zorn, Inna Dubchak: ASDB: database of alternatively spliced genes. Nucleic Acids Research 28(1): 296-297 (2000) | |
1999 | ||
12 | Leonid Peshkin, Mikhail S. Gelfand: Segmentation of yeast DNA using hidden Markov models. Bioinformatics 15(12): 980-986 (1999) | |
11 | Mikhail S. Gelfand, Inna Dubchak, I. Dralyuk, Manfred Zorn: ASDB: database of alternatively spliced genes. Nucleic Acids Research 27(1): 301-302 (1999) | |
1998 | ||
10 | Dmitrij Frishman, Andrey A. Mironov, Hans-Werner Mewes, Mikhail S. Gelfand: Combining diverse evidence for gene recognition in completely sequenced bacterial genomes. German Conference on Bioinformatics 1998 | |
9 | Sing-Hoi Sze, Mikhail A. Roytberg, Mikhail S. Gelfand, Andrey A. Mironov, Tatiana V. Astakhova, Pavel A. Pevzner: Algorithms and software for support of gene identification experiments. Bioinformatics 14(1): 14-19 (1998) | |
1997 | ||
8 | EE | Mikhail A. Roytberg, Tatiana V. Astakhova, Mikhail S. Gelfand: Combinatorial Approaches to Gene Recognition. Computers & Chemistry 21(4): 229-235 (1997) |
1996 | ||
7 | Mikhail S. Gelfand, Andrey A. Mironov, Pavel A. Pevzner: Spliced Alignment: A New Approach to Gene Recognition. CPM 1996: 141-158 | |
6 | Mikhail S. Gelfand, L. I. Podolsky, Tatiana V. Astakhova, Mikhail A. Roytberg: Recognition of Genes in Human DNA Sequences. Journal of Computational Biology 3(2): 223-234 (1996) | |
1995 | ||
5 | Mikhail S. Gelfand: FANS-REF: a bibliography on statistics and functional analysis of nucleotide sequences. Computer Applications in the Biosciences 11(5): 541 (1995) | |
4 | Mikhail S. Gelfand: Prediction of Function in DNA Sequence. Journal of Computational Biology 2(1): 87-115 (1995) | |
3 | Anatoly R. Rubinov, Mikhail S. Gelfand: Reconstruction of a String from Substring Precedence Data. Journal of Computational Biology 2(2): 371-381 (1995) | |
2 | Oleg Razgulyaev, Anatoly R. Rubinov, Mikhail S. Gelfand, Alexander Chetverin: Sequencing Potential of Nested Strand Hybridization. Journal of Computational Biology 2(2): 383-395 (1995) | |
1992 | ||
1 | Mikhail S. Gelfand, C. G. Kozhukhin, Pavel A. Pevzner: Extendable words in nucleotide sequences. Computer Applications in the Biosciences 8(2): 129-135 (1992) |