Mikhail S. Gelfand

2009
36	EE	Mikhail S. Gelfand, Alexei E. Kazakov, Yuri D. Korostelev, Olga N. Laikova, Andrey A. Mironov, Aleksandra B. Rakhmaninova, Dmitry A. Ravcheev, Dmitry A. Rodionov, Alexei G. Vitreschak: Evolution of Regulatory Systems in Bacteria (Invited Keynote Talk). ISBRA 2009: 1-4
2008
35	EE	Natalia V. Sernova, Mikhail S. Gelfand: Identification of replication origins in prokaryotic genomes. Briefings in Bioinformatics 9(5): 376-391 (2008)
2007
34	EE	Ekaterina O. Ermakova, Ramil N. Nurtdinov, Mikhail S. Gelfand: Overlapping Alternative donor splice Sites in the Human genome. J. Bioinformatics and Computational Biology 5(5): 991-1004 (2007)
33	EE	Alexei E. Kazakov, Michael J. Cipriano, Pavel S. Novichkov, Simon Minovitsky, Dmitry V. Vinogradov, Adam Arkin, Andrey A. Mironov, Mikhail S. Gelfand, Inna Dubchak: RegTransBase - a database of regulatory sequences and interactions in a wide range of prokaryotic genomes. Nucleic Acids Research 35(Database-Issue): 407-412 (2007)
2006
32	EE	Nataliya S. Sadovskaya, Roman A. Sutormin, Mikhail S. Gelfand: Recognition of Transmembrane Segments in Proteins: Review and Consistency-based Benchmarking of Internet Servers. J. Bioinformatics and Computational Biology 4(5): 1033-1056 (2006)
31	EE	Galina Yu. Kovaleva, Georgii A. Bazykin, Michael Brudno, Mikhail S. Gelfand: Comparative Genomics of Transcriptional Regulation in Yeasts and its Application to Identification of a Candidate Alpha-isopropylmalate Transporter. J. Bioinformatics and Computational Biology 4(5): 981-998 (2006)
2005
30	EE	A. D. Neverov, Irena I. Artamonova, Ramil N. Nurtdinov, Dmitrij Frishman, Mikhail S. Gelfand, Andrey A. Mironov: Alternative splicing and protein function. BMC Bioinformatics 6: 266 (2005)
29	EE	Alexander V. Favorov, Mikhail S. Gelfand, Anna V. Gerasimova, Dmitry A. Ravcheev, Andrey A. Mironov, Vsevolod Makeev: A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length. Bioinformatics 21(10): 2240-2245 (2005)
28	EE	Irena I. Artamonova, Goar Frishman, Mikhail S. Gelfand, Dmitrij Frishman: Mining sequence annotation databanks for association patterns. Bioinformatics 21(S3): 57 (2005)
27	EE	Anna V. Gerasimova, Mikhail S. Gelfand: Evolution of the Nadr Regulon in Enterobacteriaceae. J. Bioinformatics and Computational Biology 3(4): 1007-1019 (2005)
2004
26	EE	Marc N. Offman, Ramil N. Nurtdinov, Mikhail S. Gelfand, Dmitrij Frishman: No statistical support for correlation between the positions of protein interaction sites and alternatively spliced regions. BMC Bioinformatics 5: 41 (2004)
25		Olga V. Kalinina, Pavel S. Novichkov, Andrey A. Mironov, Mikhail S. Gelfand, Aleksandra B. Rakhmaninova: SDPpred: a tool for prediction of amino acid residues that determine differences in functional specificity of homologous proteins. Nucleic Acids Research 32(Web-Server-Issue): 424-428 (2004)
2003
24	EE	Eleazar Eskin, Uri Keich, Mikhail S. Gelfand, Pavel A. Pevzner: Genome-Wide Analysis of Bacterial Promoter Regions. Pacific Symposium on Biocomputing 2003: 29-40
23	EE	Olga V. Kalinina, Vsevolod Makeev, Roman A. Sutormin, Mikhail S. Gelfand, Aleksandra B. Rakhmaninova: The channel in transporters is formed by residues that are rare in transmembrane helices. In Silico Biology 3: 17 (2003)
22	EE	Alexei E. Kazakov, Olga Vassieva, Mikhail S. Gelfand, Andrei Osterman, Ross A. Overbeek: Bioinformatics classification and functional analysis of PhoH homologs. In Silico Biology 3: 2 (2003)
21	EE	Ludmila V. Danilova, Vassily A. Lyubetsky, Mikhail S. Gelfand: An algorithm for identification of regulatory signals in unaligned DNA sequences, its testing and parallel implementation. In Silico Biology 3: 4 (2003)
2002
20	EE	Sing-Hoi Sze, Mikhail S. Gelfand, Pavel A. Pevzner: Finding Weak Motifs in DNA Sequences. Pacific Symposium on Biocomputing 2002: 235-246
19		M. V. Baytaluk, Mikhail S. Gelfand, Andrey A. Mironov: Exact mapping of prokaryotic gene starts. Briefings in Bioinformatics 3(2): 181-194 (2002)
18		Julia V. Ponomarenko, Galina Orlova, Anatoly S. Frolov, Mikhail S. Gelfand, Mikhail P. Ponomarenko: SELEX_DB: a database on in vitro selected oligomers adapted for recognizing natural sites and for analyzing both SNPs and site-directed mutagenesis data. Nucleic Acids Research 30(1): 195-199 (2002)
2001
17		Andrey A. Mironov, Pavel S. Novichkov, Mikhail S. Gelfand: Pro-Frame: similarity-based gene recognition in eukaryotic DNA sequences with errors. Bioinformatics 17(1): 13-15 (2001)
16		Pavel S. Novichkov, Mikhail S. Gelfand, Andrey A. Mironov: Gene recognition in eukaryotic DNA by comparison of genomic sequences. Bioinformatics 17(11): 1011-1018 (2001)
2000
15	EE	Vsevolod Makeev, Vasily Ramensky, Mikhail S. Gelfand, Mikhail A. Roytberg, Vladimir G. Tumanyan: Bayesian Approach to DNA Segmentation into Regions with Different Average Nucleotide Composition. JOBIM 2000: 57-73
14		Mikhail S. Gelfand, Pavel S. Novichkov, Elena S. Novichkova, Andrey A. Mironov: Comparative Analysis of Regulatory Patterns in Bacterial Genomes. Briefings in Bioinformatics 1(4): 357-371 (2000)
13		I. Dralyuk, Michael Brudno, Mikhail S. Gelfand, Manfred Zorn, Inna Dubchak: ASDB: database of alternatively spliced genes. Nucleic Acids Research 28(1): 296-297 (2000)
1999
12		Leonid Peshkin, Mikhail S. Gelfand: Segmentation of yeast DNA using hidden Markov models. Bioinformatics 15(12): 980-986 (1999)
11		Mikhail S. Gelfand, Inna Dubchak, I. Dralyuk, Manfred Zorn: ASDB: database of alternatively spliced genes. Nucleic Acids Research 27(1): 301-302 (1999)
1998
10		Dmitrij Frishman, Andrey A. Mironov, Hans-Werner Mewes, Mikhail S. Gelfand: Combining diverse evidence for gene recognition in completely sequenced bacterial genomes. German Conference on Bioinformatics 1998
9		Sing-Hoi Sze, Mikhail A. Roytberg, Mikhail S. Gelfand, Andrey A. Mironov, Tatiana V. Astakhova, Pavel A. Pevzner: Algorithms and software for support of gene identification experiments. Bioinformatics 14(1): 14-19 (1998)
1997
8	EE	Mikhail A. Roytberg, Tatiana V. Astakhova, Mikhail S. Gelfand: Combinatorial Approaches to Gene Recognition. Computers & Chemistry 21(4): 229-235 (1997)
1996
7		Mikhail S. Gelfand, Andrey A. Mironov, Pavel A. Pevzner: Spliced Alignment: A New Approach to Gene Recognition. CPM 1996: 141-158
6		Mikhail S. Gelfand, L. I. Podolsky, Tatiana V. Astakhova, Mikhail A. Roytberg: Recognition of Genes in Human DNA Sequences. Journal of Computational Biology 3(2): 223-234 (1996)
1995
5		Mikhail S. Gelfand: FANS-REF: a bibliography on statistics and functional analysis of nucleotide sequences. Computer Applications in the Biosciences 11(5): 541 (1995)
4		Mikhail S. Gelfand: Prediction of Function in DNA Sequence. Journal of Computational Biology 2(1): 87-115 (1995)
3		Anatoly R. Rubinov, Mikhail S. Gelfand: Reconstruction of a String from Substring Precedence Data. Journal of Computational Biology 2(2): 371-381 (1995)
2		Oleg Razgulyaev, Anatoly R. Rubinov, Mikhail S. Gelfand, Alexander Chetverin: Sequencing Potential of Nested Strand Hybridization. Journal of Computational Biology 2(2): 383-395 (1995)
1992
1		Mikhail S. Gelfand, C. G. Kozhukhin, Pavel A. Pevzner: Extendable words in nucleotide sequences. Computer Applications in the Biosciences 8(2): 129-135 (1992)

Coauthor Index

1	Adam Arkin	[33]
2	Irena I. Artamonova	[28] [30]
3	Tatiana V. Astakhova	[6] [8] [9]
4	M. V. Baytaluk	[19]
5	Georgii A. Bazykin	[31]
6	Michael Brudno	[13] [31]
7	Alexander Chetverin	[2]
8	Michael J. Cipriano	[33]
9	Ludmila V. Danilova	[21]
10	I. Dralyuk	[11] [13]
11	Inna Dubchak	[11] [13] [33]
12	Ekaterina O. Ermakova	[34]
13	Eleazar Eskin	[24]
14	Alexander V. Favorov	[29]
15	Dmitrij Frishman	[10] [26] [28] [30]
16	Goar Frishman	[28]
17	Anatoly S. Frolov	[18]
18	Anna V. Gerasimova	[27] [29]
19	Olga V. Kalinina	[23] [25]
20	Alexei E. Kazakov	[22] [33] [36]
21	Uri Keich	[24]
22	Yuri D. Korostelev	[36]
23	Galina Yu. Kovaleva	[31]
24	C. G. Kozhukhin	[1]
25	Olga N. Laikova	[36]
26	Vassily A. Lyubetsky	[21]
27	Vsevolod Makeev	[15] [23] [29]
28	Hans-Werner Mewes	[10]
29	Simon Minovitsky	[33]
30	Andrey A. Mironov	[7] [9] [10] [14] [16] [17] [19] [25] [29] [30] [33] [36]
31	A. D. Neverov	[30]
32	Pavel S. Novichkov	[14] [16] [17] [25] [33]
33	Elena S. Novichkova	[14]
34	Ramil N. Nurtdinov	[26] [30] [34]
35	Marc N. Offman	[26]
36	Galina Orlova	[18]
37	Andrei Osterman	[22]
38	Ross A. Overbeek	[22]
39	Leonid Peshkin	[12]
40	Pavel A. Pevzner	[1] [7] [9] [20] [24]
41	L. I. Podolsky	[6]
42	Julia V. Ponomarenko	[18]
43	Mikhail P. Ponomarenko	[18]
44	Aleksandra B. Rakhmaninova	[23] [25] [36]
45	Vasily Ramensky	[15]
46	Dmitry A. Ravcheev	[29] [36]
47	Oleg Razgulyaev	[2]
48	Dmitry A. Rodionov	[36]
49	Mikhail A. Roytberg	[6] [8] [9] [15]
50	Anatoly R. Rubinov	[2] [3]
51	Nataliya S. Sadovskaya	[32]
52	Natalia V. Sernova	[35]
53	Roman A. Sutormin	[23] [32]
54	Sing-Hoi Sze	[9] [20]
55	Vladimir G. Tumanyan	[15]
56	Olga Vassieva	[22]
57	Dmitry V. Vinogradov	[33]
58	Alexei G. Vitreschak	[36]
59	Manfred Zorn	[11] [13]

Colors in the list of coauthors