Inna Dubchak

2008
25	EE	Victor M. Markowitz, Ernest Szeto, Krishna Palaniappan, Yuri Grechkin, Ken Chu, I-Min A. Chen, Inna Dubchak, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides: The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions. Nucleic Acids Research 36(Database-Issue): 528-533 (2008)
24	EE	Victor M. Markowitz, Natalia Ivanova, Ernest Szeto, Krishna Palaniappan, Ken Chu, Daniel Dalevi, I-Min A. Chen, Yuri Grechkin, Inna Dubchak, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Philip Hugenholtz, Nikos Kyrpides: IMG/M: a data management and analysis system for metagenomes. Nucleic Acids Research 36(Database-Issue): 534-538 (2008)
2007
23	EE	Shengyin Gu, Iain Anderson, Victor Kunin, Michael J. Cipriano, Simon Minovitsky, Gunther H. Weber, Nina Amenta, Bernd Hamann, Inna Dubchak: TreeQ-VISTA: an interactive tree visualization tool with functional annotation query capabilities. Bioinformatics 23(6): 764-766 (2007)
22	EE	Alexei E. Kazakov, Michael J. Cipriano, Pavel S. Novichkov, Simon Minovitsky, Dmitry V. Vinogradov, Adam Arkin, Andrey A. Mironov, Mikhail S. Gelfand, Inna Dubchak: RegTransBase - a database of regulatory sequences and interactions in a wide range of prokaryotic genomes. Nucleic Acids Research 35(Database-Issue): 407-412 (2007)
21	EE	Axel Visel, Simon Minovitsky, Inna Dubchak, Len A. Pennacchio: VISTA Enhancer Browser - a database of tissue-specific human enhancers. Nucleic Acids Research 35(Database-Issue): 88-92 (2007)
20	EE	Michael Brudno, Alexander Poliakov, Simon Minovitsky, Igor Ratnere, Inna Dubchak: Multiple whole genome alignments and novel biomedical applications at the VISTA portal. Nucleic Acids Research 35(Web-Server-Issue): 669-674 (2007)
2006
19	EE	Victor M. Markowitz, Natalia Ivanova, Krishna Palaniappan, Ernest Szeto, Frank Korzeniewski, Athanasios Lykidis, Iain Anderson, Konstantinos Mavrommatis, Victor Kunin, Hector Garcia Martin, Inna Dubchak, Philip Hugenholtz, Nikos Kyrpides: An experimental metagenome data management and analysis system. ISMB (Supplement of Bioinformatics) 2006: 359-367
18	EE	Victor M. Markowitz, Frank Korzeniewski, Krishna Palaniappan, Ernest Szeto, Greg Werner, Anu Padki, Xueling Zhao, Inna Dubchak, Philip Hugenholtz, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides: The integrated microbial genomes (IMG) system. Nucleic Acids Research 34(Database-Issue): 344-348 (2006)
2005
17	EE	Nameeta Shah, Michael V. Teplitsky, Simon Minovitsky, Len A. Pennacchio, Philip Hugenholtz, Bernd Hamann, Inna Dubchak: SNP-VISTA: An interactive SNP visualization tool. BMC Bioinformatics 6: 292 (2005)
2004
16	EE	Nameeta Shah, Olivier Couronne, Len A. Pennacchio, Michael Brudno, Serafim Batzoglou, E. Wes Bethel, Edward M. Rubin, Bernd Hamann, Inna Dubchak: Phylo-VISTA: interactive visualization of multiple DNA sequence alignments. Bioinformatics 20(5): 636-643 (2004)
15		Kelly A. Frazer, Lior Pachter, Alexander Poliakov, Edward M. Rubin, Inna Dubchak: VISTA: computational tools for comparative genomics. Nucleic Acids Research 32(Web-Server-Issue): 273-279 (2004)
2003
14	EE	Michael Brudno, Sanket Malde, Alexander Poliakov, Chuong B. Do, Olivier Couronne, Inna Dubchak, Serafim Batzoglou: Glocal alignment: finding rearrangements during alignment. ISMB (Supplement of Bioinformatics) 2003: 54-62
13	EE	Liping Wei, Inna Dubchak, Victor V. Solovyev: Genome-wide Analysis and Comparative Genomics - Session Introduction. Pacific Symposium on Biocomputing 2003: 276-278
2002
12	EE	Inna Dubchak, Lior Pachter, Liping Wei: Genome-Wide Analysis and Comparative Genomics - Session Introduction. Pacific Symposium on Biocomputing 2002: 112-114
11		Inna Dubchak, Lior Pachter: The computational challenges of applying comparative-based computational methods to whole genomes. Briefings in Bioinformatics 3(1): 18-22 (2002)
10	EE	Liping Wei, Yueyi Liu, Inna Dubchak, John Shon, John Park: Comparative genomics approaches to study organism similarities and differences. Journal of Biomedical Informatics 35(2): 142-150 (2002)
2001
9		Chris H. Q. Ding, Inna Dubchak: Multi-class protein fold recognition using support vector machines and neural networks. Bioinformatics 17(4): 349-358 (2001)
2000
8		Chris Mayor, Michael Brudno, Jody R. Schwartz, Alexander Poliakov, Edward M. Rubin, Kelly A. Frazer, Lior Pachter, Inna Dubchak: VISTA : visualizing global DNA sequence alignments of arbitrary length. Bioinformatics 16(11): 1046-1047 (2000)
7		I. Saira Mian, Inna Dubchak: Representing and Reasoning about Protein Families Using Generative and Discriminative Methods. Journal of Computational Biology 7(6): 849-862 (2000)
6		I. Dralyuk, Michael Brudno, Mikhail S. Gelfand, Manfred Zorn, Inna Dubchak: ASDB: database of alternatively spliced genes. Nucleic Acids Research 28(1): 296-297 (2000)
1999
5		Poe Xing, Casimir A. Kulikowski, Ilya B. Muchnik, Inna Dubchak, Denise M. Wolf, Sylvia Spengler, Manfred Zorn: Analysis of Ribosomal RNA Sequences by Combinatorial Clustering. ISMB 1999: 287-296
4		Mikhail S. Gelfand, Inna Dubchak, I. Dralyuk, Manfred Zorn: ASDB: database of alternatively spliced genes. Nucleic Acids Research 27(1): 301-302 (1999)
1997
3		Inna Dubchak, Ilya B. Muchnik, Sung-Hou Kim: Protein Folding Class Predictor for SCOP: Approach Based on Global Descriptors. ISMB 1997: 104-107
1995
2		Eddy Mayoraz, Inna Dubchak, Ilya B. Muchnik: Relation Between Protein Structure, Sequence Homology and Composition of Amino Acids. ISMB 1995: 240-248
1993
1		Inna Dubchak, Stephen R. Holbrook, Sung-Hou Kim: Comparison of Two Variations of Neural Network Approaches to the Prediction of Protein Folding Pattern. ISMB 1993: 118-126

Coauthor Index

1	Nina Amenta	[23]
2	Iain Anderson	[18] [19] [23] [24] [25]
3	Adam Arkin	[22]
4	Serafim Batzoglou	[14] [16]
5	E. Wes Bethel (Wes Bethel)	[16]
6	Michael Brudno	[6] [8] [14] [16] [20]
7	I-Min A. Chen	[24] [25]
8	Ken Chu	[24] [25]
9	Michael J. Cipriano	[22] [23]
10	Olivier Couronne	[14] [16]
11	Daniel Dalevi	[24]
12	Chris H. Q. Ding (Hong Q. Ding)	[9]
13	Chuong B. Do	[14]
14	I. Dralyuk	[4] [6]
15	Kelly A. Frazer	[8] [15]
16	Mikhail S. Gelfand	[4] [6] [22]
17	Yuri Grechkin	[24] [25]
18	Shengyin Gu	[23]
19	Bernd Hamann	[16] [17] [23]
20	Stephen R. Holbrook	[1]
21	Philip Hugenholtz	[17] [18] [19] [24]
22	Natalia Ivanova	[18] [19] [24] [25]
23	Alexei E. Kazakov	[22]
24	Sung-Hou Kim	[1] [3]
25	Frank Korzeniewski	[18] [19]
26	Casimir A. Kulikowski	[5]
27	Victor Kunin	[19] [23]
28	Nikos Kyrpides	[18] [19] [24] [25]
29	Yueyi Liu	[10]
30	Athanasios Lykidis	[18] [19] [24] [25]
31	Sanket Malde	[14]
32	Victor M. Markowitz	[18] [19] [24] [25]
33	Hector Garcia Martin	[19]
34	Konstantinos Mavrommatis	[18] [19] [24] [25]
35	Chris Mayor	[8]
36	Eddy Mayoraz	[2]
37	I. Saira Mian	[7]
38	Simon Minovitsky	[17] [20] [21] [22] [23]
39	Andrey A. Mironov	[22]
40	Ilya B. Muchnik	[2] [3] [5]
41	Pavel S. Novichkov	[22]
42	Lior Pachter	[8] [11] [12] [15]
43	Anu Padki	[18]
44	Krishna Palaniappan	[18] [19] [24] [25]
45	John Park	[10]
46	Len A. Pennacchio	[16] [17] [21]
47	Alexander Poliakov	[8] [14] [15] [20]
48	Igor Ratnere	[20]
49	Edward M. Rubin	[8] [15] [16]
50	Jody R. Schwartz	[8]
51	Nameeta Shah	[16] [17]
52	John Shon	[10]
53	Victor V. Solovyev	[13]
54	Sylvia Spengler	[5]
55	Ernest Szeto	[18] [19] [24] [25]
56	Michael V. Teplitsky	[17]
57	Dmitry V. Vinogradov	[22]
58	Axel Visel	[21]
59	Gunther H. Weber	[23]
60	Liping Wei	[10] [12] [13]
61	Greg Werner	[18]
62	Denise M. Wolf	[5]
63	Poe Xing	[5]
64	Xueling Zhao	[18]
65	Manfred Zorn	[4] [5] [6]

Colors in the list of coauthors