| 2008 |
|---|
| 82 | | Russ B. Altman,
A. Keith Dunker,
Lawrence Hunter,
Tiffany Murray,
Teri E. Klein:
Biocomputing 2008, Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, 4-8 January 2008
World Scientific 2008 |
| 81 | EE | Russ B. Altman:
Text mining for pharmacogenomics.
DTMBIO 2008: 1-2 |
| 80 | EE | Dariya S. Glazer,
Randall J. Radmer,
Russ B. Altman:
Combining Molecular Dynamics and Machine Learning to Improve Protein Function Recognition.
Pacific Symposium on Biocomputing 2008: 332-343 |
| 79 | EE | Peggy Yao,
Ankur Dhanik,
Nathan Marz,
Ryan Propper,
Charles Kou,
Guanfeng Liu,
Henry van den Bedem,
Jean-Claude Latombe,
Inbal Halperin-Landsberg,
Russ B. Altman:
Efficient Algorithms to Explore Conformation Spaces of Flexible Protein Loops.
IEEE/ACM Trans. Comput. Biology Bioinform. 5(4): 534-545 (2008) |
| 78 | EE | Tina Hernandez-Boussard,
Michelle Whirl Carrillo,
Joan M. Hebert,
Li Gong,
Ryan Owen,
Mei Gong,
Winston Gor,
Feng Liu,
Chuong Truong,
Ryan Whaley,
Mark Woon,
Tina Zhou,
Russ B. Altman,
Teri E. Klein:
The pharmacogenetics and pharmacogenomics knowledge base: accentuating the knowledge.
Nucleic Acids Research 36(Database-Issue): 913-918 (2008) |
| 2007 |
|---|
| 77 | | Russ B. Altman,
A. Keith Dunker,
Lawrence Hunter,
Tiffany Murray,
Teri E. Klein:
Biocomputing 2007, Proceedings of the Pacific Symposium, Maui, Hawaii, USA, 3-7 January 2007
World Scientific 2007 |
| 76 | EE | Russ B. Altman:
Combining Simulation and Machine Learning to Recognize Function in 4D.
BIBM 2007: 3 |
| 75 | EE | Russ B. Altman:
Current progress in bioinformatics 2007.
Briefings in Bioinformatics 8(5): 277-278 (2007) |
| 74 | EE | Russ B. Altman,
Teri E. Klein:
Biomedical informatics training at Stanford in the 21st century.
Journal of Biomedical Informatics 40(1): 55-58 (2007) |
| 2006 |
|---|
| 73 | | Russ B. Altman,
Tiffany Murray,
Teri E. Klein,
A. Keith Dunker,
Lawrence Hunter:
Biocomputing 2006, Proceedings of the Pacific Symposium, Maui, Hawaii, USA, 3-7 January 2006
World Scientific 2006 |
| 72 | EE | Scott L. Delp,
F. Clayton Anderson,
Russ B. Altman:
Physics-based simulation of biological structures.
ISBI 2006: 802-805 |
| 71 | EE | Russ B. Altman:
Annual Progress in Bioinformatics 2006.
Briefings in Bioinformatics 7(3): 209-210 (2006) |
| 70 | EE | Tu Minh Phuong,
Zhen Lin,
Russ B. Altman:
Choosing Snps Using Feature Selection.
J. Bioinformatics and Computational Biology 4(2): 241-258 (2006) |
| 2005 |
|---|
| 69 | | Russ B. Altman,
Tiffany A. Jung,
Teri E. Klein,
A. Keith Dunker,
Lawrence Hunter:
Biocomputing 2005, Proceedings of the Pacific Symposium, Hawaii, USA, 4-8 January 2005
World Scientific 2005 |
| 68 | EE | Russ B. Altman:
Challenges in Creating an Infrastructure for Physics-Based Simulation of Biological Structures.
CSB 2005: 3 |
| 67 | EE | Tu Minh Phuong,
Zhen Lin,
Russ B. Altman:
Choosing SNPs Using Feature Selection.
CSB 2005: 301-309 |
| 66 | EE | Russ B. Altman,
A. Keith Dunker,
Lawrence Hunter,
Teri E. Klein:
Preface.
Pacific Symposium on Biocomputing 2005 |
| 65 | | Russ B. Altman:
Editorial: Annual progress in bioinformatics.
Briefings in Bioinformatics 6(1): 4-5 (2005) |
| 64 | EE | Jonathan D. Wren,
Jeffrey T. Chang,
James Pustejovsky,
Eytan Adar,
Harold R. Garner,
Russ B. Altman:
Biomedical term mapping databases.
Nucleic Acids Research 33(Database-Issue): 289-293 (2005) |
| 2004 |
|---|
| 63 | | Russ B. Altman,
A. Keith Dunker,
Lawrence Hunter,
Tiffany A. Jung,
Teri E. Klein:
Biocomputing 2004, Proceedings of the Pacific Symposium, Hawaii, USA, 6-10 January 2004
World Scientific 2004 |
| 62 | EE | Russ B. Altman,
A. Keith Dunker,
Lawrence Hunter,
Teri E. Klein:
Preface.
Pacific Symposium on Biocomputing 2004 |
| 61 | EE | Diane E. Oliver,
Gaurav Bhalotia,
Ariel S. Schwartz,
Russ B. Altman,
Marti A. Hearst:
Tools for loading MEDLINE into a local relational database.
BMC Bioinformatics 5: 146 (2004) |
| 60 | EE | Jeffrey T. Chang,
Hinrich Schütze,
Russ B. Altman:
GAPSCORE: finding gene and protein names one word at a time.
Bioinformatics 20(2): 216-225 (2004) |
| 59 | | Russ B. Altman:
Editorial: Building successful biological databases.
Briefings in Bioinformatics 5(1): 4 (2004) |
| 2003 |
|---|
| 58 | EE | Shuo Liu,
Steve Lin,
Mark Woon,
Teri E. Klein,
Russ B. Altman:
A Personalized and Automated dbSNP Surveillance System.
CSB 2003: 132-136 |
| 57 | EE | Mike P. Liang,
Douglas L. Brutlag,
Russ B. Altman:
Automatic Construction of 3D Structural Motifs for Protein Function Prediction.
CSB 2003: 613-614 |
| 56 | EE | Mike P. Liang,
Douglas L. Brutlag,
Russ B. Altman:
Automated Construction of Structural Motifs for Predicting Functional Sites on Protein Structures.
Pacific Symposium on Biocomputing 2003: 204-215 |
| 55 | EE | Russ B. Altman,
A. Keith Dunker,
Lawrence Hunter,
Teri E. Klein:
Preface.
Pacific Symposium on Biocomputing 2003 |
| 54 | EE | Russ B. Altman,
A. Keith Dunker,
Lawrence Hunter,
Teri E. Klein:
Special Paper - Introduction.
Pacific Symposium on Biocomputing 2003: 636-637 |
| 53 | EE | Miles Osborne,
Mark Cuminskey,
Gail Sinclair,
Matthew Smillie,
Bonnie L. Webber,
Jeffrey T. Chang,
Nipun Mehra,
Veronica Rotemberg,
Russ B. Altman:
Edinburgh-Stanford TREC-2003 Genomics Track.
TREC 2003: 622-630 |
| 52 | | Sean D. Mooney,
Russ B. Altman:
MutDB: annotating human variation with functionally relevant data.
Bioinformatics 19(14): 1858-1860 (2003) |
| 51 | | Iwei Yeh,
Peter D. Karp,
Natalya Fridman Noy,
Russ B. Altman:
Knowledge acquisition, consistency checking and concurrency control for Gene Ontology (GO).
Bioinformatics 19(2): 241-248 (2003) |
| 50 | | Soumya Raychaudhuri,
Russ B. Altman:
A literature-based method for assessing the functional coherence of a gene group.
Bioinformatics 19(3): 396-401 (2003) |
| 49 | EE | Liping Wei,
Russ B. Altman:
Recognizing Complex, Asymmetric Functional Sites in Protein Structures Using a Bayesian Scoring Function.
J. Bioinformatics and Computational Biology 1(1): 119-138 (2003) |
| 48 | EE | Soumya Raychaudhuri,
Hinrich Schütze,
Russ B. Altman:
Inclusion of Textual Documentation in the Analysis of Multidimensional Data Sets: Application to Gene Expression Data.
Machine Learning 52(1-2): 119-145 (2003) |
| 47 | | Mike P. Liang,
D. Rey Banatao,
Teri E. Klein,
Douglas L. Brutlag,
Russ B. Altman:
WebFEATURE: an interactive web tool for identifying and visualizing functional sites on macromolecular structures.
Nucleic Acids Research 31(13): 3324-3327 (2003) |
| 46 | EE | Russ B. Altman:
Complexities of Managing Biomedical Information.
OMICS 7(1): 127-130 (2003) |
| 2002 |
|---|
| 45 | | Daniel L. Rubin,
Farhad Shafa,
Diane E. Oliver,
Micheal Hewett,
Russ B. Altman:
Representing genetic sequence data for pharmacogenomics: an evolutionary approach using ontological and relational models.
ISMB 2002: 207-215 |
| 44 | EE | Diane E. Oliver,
Daniel L. Rubin,
Joshua M. Stuart,
Micheal Hewett,
Teri E. Klein,
Russ B. Altman:
Ontology Development for a Pharmacogenetics Knowledge Base.
Pacific Symposium on Biocomputing 2002: 65-76 |
| 43 | EE | Daniel L. Rubin,
Micheal Hewett,
Diane E. Oliver,
Teri E. Klein,
Russ B. Altman:
Automating Data Acquisition into Ontologies from Pharmacogenetics Relational Data Sources Using Declarative Object Definitions and XML.
Pacific Symposium on Biocomputing 2002: 88-99 |
| 42 | EE | Russ B. Altman,
A. Keith Dunker,
Lawrence Hunter,
Teri E. Klein:
Preface.
Pacific Symposium on Biocomputing 2002 |
| 41 | | Olga G. Troyanskaya,
Mitchell E. Garber,
Patrick O. Brown,
David Botstein,
Russ B. Altman:
Nonparametric methods for identifying differentially expressed genes in microarray data.
Bioinformatics 18(11): 1454-1461 (2002) |
| 40 | | Mor Peleg,
Iwei Yeh,
Russ B. Altman:
Modelling biological processes using workflow and Petri Net models.
Bioinformatics 18(6): 825-837 (2002) |
| 39 | EE | Jiawei Han,
Russ B. Altman,
Vipin Kumar,
Heikki Mannila,
Daryl Pregibon:
Emerging scientific applications in data mining.
Commun. ACM 45(8): 54-58 (2002) |
| 38 | | Micheal Hewett,
Diane E. Oliver,
Daniel L. Rubin,
Katrina L. Easton,
Joshua M. Stuart,
Russ B. Altman,
Teri E. Klein:
PharmGKB: the Pharmacogenetics Knowledge Base.
Nucleic Acids Research 30(1): 163-165 (2002) |
| 2001 |
|---|
| 37 | EE | Russ B. Altman:
Challenges for knowledge discovery in biology.
KDD 2001: 2 |
| 36 | EE | D. Rey Banatao,
Conrad C. Huang,
Patricia C. Babbitt,
Russ B. Altman,
Teri E. Klein:
ViewFeature: Integrated Feature Analysis and Visualization.
Pacific Symposium on Biocomputing 2001: 240-250 |
| 35 | EE | Allison Waugh,
Glenn A. Williams,
Liping Wei,
Russ B. Altman:
Using Metacomputing Tools to Facilitate Large Scale Analyses of Biological Databases.
Pacific Symposium on Biocomputing 2001: 360-371 |
| 34 | EE | Jeffrey T. Chang,
Soumya Raychaudhuri,
Russ B. Altman:
Including Biological Literature Improves Homology Search.
Pacific Symposium on Biocomputing 2001: 374-383 |
| 33 | | Olga G. Troyanskaya,
Michael Cantor,
Gavin Sherlock,
Patrick O. Brown,
Trevor Hastie,
Robert Tibshirani,
David Botstein,
Russ B. Altman:
Missing value estimation methods for DNA microarrays.
Bioinformatics 17(6): 520-525 (2001) |
| 32 | EE | Russ B. Altman,
Alfonso Valencia,
Satoru Miyano,
Shoba Ranganathan:
Challenges for Intelligent Systems in Biology.
IEEE Intelligent Systems 16(6): 14-20 (2001) |
| 31 | | Glenn A. Williams,
Jonathan M. Dugan,
Russ B. Altman:
Constrained Global Optimization for Estimating Molecular Structure from Atomic Distances.
Journal of Computational Biology 8(5): 523-548 (2001) |
| 2000 |
|---|
| 30 | | Philip E. Bourne,
Michael Gribskov,
Russ B. Altman,
Nancy Jensen,
Debra A. Hope,
Thomas Lengauer,
Julie C. Mitchell,
Eric D. Scheeff,
Chris Smith,
Shawn Strande,
Helge Weissig:
Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, August 19-23, 2000, La Jolla / San Diego, CA, USA
AAAI 2000 |
| 29 | | Soumya Raychaudhuri,
Joshua M. Stuart,
Xuemin Liu,
Peter M. Small,
Russ B. Altman:
Pattern Recognition of Genomic Features with Microarrays: Site Typing of Mycobacterium Tuberculosis Strains.
ISMB 2000: 286-295 |
| 1999 |
|---|
| 28 | | Cheng Che Chen,
Jaswinder Pal Singh,
Russ B. Altman:
Biomolecular Structure Estimation: A Case Study of Irregular Hierarchical Parallelism.
PPSC 1999 |
| 27 | | Russ B. Altman:
AI in Medicine: The Spectrum of Challenges from Managed Care to Molecular Medicine.
AI Magazine 20(3): 67-77 (1999) |
| 26 | | Cheng Che Chen,
Jaswinder Pal Singh,
Russ B. Altman:
Using imperfect secondary structure predictions to improve molecular structure computations.
Bioinformatics 15(1): 53-65 (1999) |
| 25 | | Russ B. Altman,
Michael Bada,
Xiaoqian J. Chai,
Michelle Whirl Carrillo,
Richard O. Chen,
Neil F. Abernethy:
RiboWeb: An Ontology-Based System for Collaborative Molecular Biology.
IEEE Intelligent Systems 14(5): 68-76 (1999) |
| 1998 |
|---|
| 24 | | Jeanette P. Schmidt,
Cheng Che Chen,
Jonathan L. Cooper,
Russ B. Altman:
A Surface Measure for Probabilistic Structural Computations.
ISMB 1998: 148-156 |
| 23 | EE | Neil F. Abernethy,
Russ B. Altman:
Sophia: Providing Basic Knowledge Services with a Common DBMS.
KRDB 1998: 1.1-1.6 |
| 22 | EE | Cheng Che Chen,
Jaswinder Pal Singh,
Russ B. Altman:
The hierarchical organization of molecular structure computations.
RECOMB 1998: 51-59 |
| 21 | | Russ B. Altman:
A curriculum for bioinformatics: the time is ripe.
Bioinformatics 14(7): 549-550 (1998) |
| 20 | EE | John H. Gennari,
Heyning Cheng,
Russ B. Altman,
Mark A. Musen:
Reuse, CORBA, and knowledge-based systems.
Int. J. Hum.-Comput. Stud. 49(4): 523-546 (1998) |
| 19 | | Cheng Che Chen,
Jaswinder Pal Singh,
Russ B. Altman:
Hierarchical Organization of Molecular Structure Computations.
Journal of Computational Biology 5(3): 409-422 (1998) |
| 1997 |
|---|
| 18 | | Russ B. Altman,
Neil F. Abernethy,
Richard O. Chen:
Standardized Representations of the Literature: Combining Diverse Sources of Ribosomal Data.
ISMB 1997: 15-24 |
| 17 | | Richard O. Chen,
Ramon M. Felciano,
Russ B. Altman:
RIBOWEB: Linking Structural Computations to a Knowledge Base of Published Experimental Data.
ISMB 1997: 84-87 |
| 1996 |
|---|
| 16 | | Cheng Che Chen,
Richard O. Chen,
Russ B. Altman:
Constraining volume by matching the moments of a distance distribution.
Computer Applications in the Biosciences 12(4): 319-326 (1996) |
| 1995 |
|---|
| 15 | | Christopher J. Rawlings,
Dominic A. Clark,
Russ B. Altman,
Lawrence Hunter,
Thomas Lengauer,
Shoshana J. Wodak:
Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, Cambridge, United Kingdom, July 16-19, 1995
AAAI 1995 |
| 14 | | Steven C. Bagley,
Liping Wei,
Carol Cheng,
Russ B. Altman:
Characterizing Oriented Protein Structural Sites Using Biochemical Properties.
ISMB 1995: 12-20 |
| 13 | | John H. Gennari,
Russ B. Altman,
Mark A. Musen:
Reuse with PROTÉgÉ-II: From Elevators to Ribosomes.
SSR 1995: 72-80 |
| 12 | | Mark Gerstein,
Russ B. Altman:
Using a measure of structural variation to define a core for the globins.
Computer Applications in the Biosciences 11(6): 633-644 (1995) |
| 11 | EE | Russ B. Altman:
A probabilistic approach to determining biological structure: integrating uncertain data sources.
Int. J. Hum.-Comput. Stud. 42(6): 593-616 (1995) |
| 1994 |
|---|
| 10 | | Russ B. Altman,
Douglas L. Brutlag,
Peter D. Karp,
Richard H. Lathrop,
David B. Searls:
Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, August 14-17, 1994, Stanford University, Stanford, California, USA
AAAI 1994 |
| 9 | | Russ B. Altman,
Bryn Weiser,
Harry F. Noller:
Constraint Satisfaction Techniques for Modeling Large Complexes: Application to the Central Domain of 16S Ribosomal RNA.
ISMB 1994: 10-18 |
| 8 | | Russ B. Altman,
Mark Gerstein:
Finding an Average Core Structure: Application to the Globins.
ISMB 1994: 19-27 |
| 7 | EE | Cheng Che Chen,
Jaswinder Pal Singh,
William B. Poland,
Russ B. Altman:
Parallel protein structure determination from uncertain data.
SC 1994: 570-579 |
| 6 | EE | Russ B. Altman,
Cheng Che Chen,
William B. Poland,
Jaswinder Pal Singh:
Probabilistic Constraint Satisfaction with Non-Gaussian Noise.
UAI 1994: 15-22 |
| 1993 |
|---|
| 5 | | Russ B. Altman:
Probabilistic Structure Calculations: A Three-Dimensional tRNA Structure from Sequence Correlation Data.
ISMB 1993: 12-20 |
| 4 | EE | Russ B. Altman:
A Probabilistic Algorithm for Calculating Structure: Borrowing from Simulated Annealing.
UAI 1993: 23-31 |
| 1988 |
|---|
| 3 | EE | James F. Brinkley,
Russ B. Altman,
Bruce S. Duncan,
Bruce G. Buchanan,
Oleg Jardetzky:
Heuristic refinement method for the derivation of protein solution structures: validation on cytochrome b562.
Journal of Chemical Information and Computer Sciences 28(4): 194-210 (1988) |
| 1987 |
|---|
| 2 | | Russ B. Altman,
Bruce G. Buchanan:
Partial Compilation of Strategic Knowledge.
AAAI 1987: 399-404 |
| 1986 |
|---|
| 1 | | Barbara Hayes-Roth,
Bruce G. Buchanan,
Olivier Lichtarge,
Mike Hewitt,
Russ B. Altman,
James F. Brinkley,
Craig Cornelius,
Bruce S. Duncan,
Oleg Jardetzky:
PROTEAN: Deriving Protein Structure from Constraints.
AAAI 1986: 904-909 |
