| 2008 |
|---|
| 29 | EE | Hongqi Gong,
Lihua Li,
Hongyu Zhao:
Automatic Labeling System of Words in Text Materials for College English Tests.
ISIP 2008: 209-213 |
| 28 | EE | Jiguo Cao,
Hongyu Zhao:
Estimating dynamic models for gene regulation networks.
Bioinformatics 24(14): 1619-1624 (2008) |
| 27 | EE | Liang Chen,
Tiejun Tong,
Hongyu Zhao:
Considering dependence among genes and markers for false discovery control in eQTL mapping.
Bioinformatics 24(18): 2015-2022 (2008) |
| 26 | EE | Debayan Datta,
Hongyu Zhao:
Statistical methods to infer cooperative binding among transcription factors in Saccharomyces cerevisiae.
Bioinformatics 24(4): 545-552 (2008) |
| 2007 |
|---|
| 25 | EE | Weichuan Yu,
Junfeng Liu,
Chris Colangelo,
Erol Gulcicek,
Hongyu Zhao:
A new protocol of analyzing isotope-coded affinity tag data from high-resolution LC-MS spectrometry.
Computational Biology and Chemistry 31(3): 215-221 (2007) |
| 24 | EE | Valentin Dinu,
Hongyu Zhao,
Perry L. Miller:
Integrating domain knowledge with statistical and data mining methods for high-density genomic SNP disease association analysis.
Journal of Biomedical Informatics 40(6): 750-760 (2007) |
| 2006 |
|---|
| 23 | EE | Herbert Pang,
Aiping Lin,
Matthew Holford,
Bradley E. Enerson,
Bin Lu,
Michael P. Lawton,
Eugenia Floyd,
Hongyu Zhao:
Pathway analysis using random forests classification and regression.
Bioinformatics 22(16): 2028-2036 (2006) |
| 22 | EE | Weichuan Yu,
Baolin Wu,
Ning Lin,
Kathy Stone,
Kenneth Williams,
Hongyu Zhao:
Detecting and aligning peaks in mass spectrometry data with applications to MALDI.
Computational Biology and Chemistry 30(1): 27-38 (2006) |
| 21 | EE | Weichuan Yu,
Xiaoye Li,
Junfeng Liu,
Baolin Wu,
Kenneth R. Williams,
Hongyu Zhao:
Multiple Peak Alignment in Sequential Data Analysis: A Scale-Space-Based Approach.
IEEE/ACM Trans. Comput. Biology Bioinform. 3(3): 208-219 (2006) |
| 2005 |
|---|
| 20 | EE | Weichuan Yu,
Xiaoye Li,
Hongyu Zhao:
Aligning Peaks Across Multiple Mass Spectrometry Data Sets Using A Scale-Space Based Approach.
CSB Workshops 2005: 126-127 |
| 19 | EE | Nan Lin,
Hongyu Zhao:
Are scale-free networks robust to measurement errors?
BMC Bioinformatics 6: 119 (2005) |
| 18 | EE | Kui Zhang,
Fengzhu Sun,
Hongyu Zhao:
HAPLORE: a program for haplotype reconstruction in general pedigrees without recombination.
Bioinformatics 21(1): 90-103 (2005) |
| 17 | EE | Yin Liu,
Nianjun Liu,
Hongyu Zhao:
Inferring protein-protein interactions through high-throughput interaction data from diverse organisms.
Bioinformatics 21(15): 3279-3285 (2005) |
| 16 | EE | Tao Huang,
Baolin Wu,
Paul Lizardi,
Hongyu Zhao:
Detection of DNA copy number alterations using penalized least squares regression.
Bioinformatics 21(20): 3811-3817 (2005) |
| 15 | EE | Liang Chen,
Hongyu Zhao:
Negative correlation between compositional symmetries and local recombination rates.
Bioinformatics 21(21): 3951-3958 (2005) |
| 14 | EE | Zhong Guan,
Hongyu Zhao:
A semiparametric approach for marker gene selection based on gene expression data.
Bioinformatics 21(4): 529-536 (2005) |
| 13 | EE | Matthew Holford,
Naixin Li,
Prakash M. Nadkarni,
Hongyu Zhao:
VitaPad: visualization tools for the analysis of pathway data.
Bioinformatics 21(8): 1596-1602 (2005) |
| 12 | EE | Yinglei Lai,
Hongyu Zhao:
A statistical method to detect chromosomal regions with DNA copy number alterations using SNP-array-based CGH data.
Computational Biology and Chemistry 29(1): 47-54 (2005) |
| 11 | EE | Yinglei Lai,
Hongyu Zhao:
Erratum to "A statistical method to detect chromosomal regions with DNA copy number alterations using SNP-array-based CGH data": [Comput. Biol. Chem. 29(2005) 47-54]
Computational Biology and Chemistry 29(3): 258 (2005) |
| 10 | EE | Liang Chen,
Hongyu Zhao:
Integrating mRNA Decay Information into Co-Regulation Study.
J. Comput. Sci. Technol. 20(4): 434-438 (2005) |
| 2004 |
|---|
| 9 | EE | Michael V. Osier,
Hongyu Zhao,
Kei-Hoi Cheung:
Handling multiple testing while interpreting microarrays with the Gene Ontology Database.
BMC Bioinformatics 5: 124 (2004) |
| 8 | EE | Nan Lin,
Baolin Wu,
Ronald Jansen,
Mark Gerstein,
Hongyu Zhao:
Information assessment on predicting protein-protein interactions.
BMC Bioinformatics 5: 154 (2004) |
| 7 | EE | Yin Liu,
Hongyu Zhao:
A computational approach for ordering signal transduction pathway components from genomics and proteomics Data.
BMC Bioinformatics 5: 158 (2004) |
| 6 | EE | Yinglei Lai,
Baolin Wu,
Liang Chen,
Hongyu Zhao:
A statistical method for identifying differential gene-gene co-expression patterns.
Bioinformatics 20(17): 3146-3155 (2004) |
| 5 | | Wenming Zhao,
Jing Wang,
Ximiao He,
Xiaobing Huang,
Yongzhi Jiao,
Mingtao Dai,
Shulin Wei,
Jian Fu,
Ye Chen,
Xiaoyu Ren,
Yong Zhang,
Peixiang Ni,
Jianguo Zhang,
Songgang Li,
Jian Wang,
Gane Ka-Shu Wong,
Hongyu Zhao,
Jun Yu,
Huanming Yang,
Jun Wang:
BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics.
Nucleic Acids Research 32(Database-Issue): 377-382 (2004) |
| 2003 |
|---|
| 4 | EE | Deyun Pan,
Ning Sun,
Kei-Hoi Cheung,
Zhong Guan,
Ligeng Ma,
Matthew Holford,
Xingwang Deng,
Hongyu Zhao:
PathMAPA: a tool for displaying gene expression and performing statistical tests on metabolic pathways at multiple levels for Arabidopsis.
BMC Bioinformatics 4: 56 (2003) |
| 3 | | Baolin Wu,
Tom Abbott,
David Fishman,
Walter McMurray,
Gil Mor,
Kathryn Stone,
David Ward,
Kenneth Williams,
Hongyu Zhao:
Comparison of statistical methods for classification of ovarian cancer using mass spectrometry data.
Bioinformatics 19(13): 1636-1643 (2003) |
| 2002 |
|---|
| 2 | EE | Shuanglin Zhang,
Kui Zhang,
Jinming Li,
Hongyu Zhao:
On a Family-Based Haplotype Pattern Mining Method for Linkage Disequilibrium Mapping.
Pacific Symposium on Biocomputing 2002: 100-111 |
| 2001 |
|---|
| 1 | | Hongyu Zhao,
Feng Liang:
On Relationship Inference Using Gamete Identity by Descent Data.
Journal of Computational Biology 8(2): 191-200 (2001) |
