2006 | ||
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23 | EE | Alexander E. Kel, Tatiana Konovalova, T. Waleev, Evgeny Cheremushkin, Olga V. Kel-Margoulis, Edgar Wingender: Composite Module Analyst: a fitness-based tool for identification of transcription factor binding site combinations. Bioinformatics 22(10): 1190-1197 (2006) |
22 | EE | V. Matys, Olga V. Kel-Margoulis, Ellen Fricke, Ines Liebich, Sigrid Land, A. Barre-Dirrie, Ingmar Reuter, D. Chekmenev, Mathias Krull, Klaus Hornischer, Nico Voss, P. Stegmaier, Birgit Lewicki-Potapov, H. Saxel, Alexander E. Kel, Edgar Wingender: TRANSFAC® and its module TRANSCompel®: transcriptional gene regulation in eukaryotes. Nucleic Acids Research 34(Database-Issue): 108-110 (2006) |
21 | EE | Mathias Krull, Susanne Pistor, Nico Voss, Alexander E. Kel, Ingmar Reuter, Deborah Kronenberg, Holger Michael, Knut Schwarzer, Anatolij Potapov, Claudia Choi, Olga V. Kel-Margoulis, Edgar Wingender: TRANSPATH®: an information resource for storing and visualizing signaling pathways and their pathological aberrations. Nucleic Acids Research 34(Database-Issue): 546-551 (2006) |
20 | EE | T. Waleev, D. Shtokalo, Tatiana Konovalova, Nico Voss, Evgeny Cheremushkin, P. Stegmaier, Olga V. Kel-Margoulis, Edgar Wingender, Alexander E. Kel: Composite Module Analyst: identification of transcription factor binding site combinations using genetic algorithm. Nucleic Acids Research 34(Web-Server-Issue): 541-545 (2006) |
2005 | ||
19 | Alexander E. Kel, Tatiana Konovalova, Tagir Valeev, Evgeny Cheremushkin, Olga V. Kel-Margoulis, Edgar Wingender: Composite Module Analyst: A Fitness-Based Tool for Prediction of Transcription Regulation. German Conference on Bioinformatics 2005: 63-75 | |
2004 | ||
18 | Alexander E. Kel, Nico Voss, Tatiana Konovalova, Dmitri Tchekmenev, P. Wabnitz, Olga V. Kel-Margoulis, Edgar Wingender: From Composite Patters to Pathways - Prediction of Key Regulators of Gene Expression. German Conference on Bioinformatics 2004: 189-198 | |
2003 | ||
17 | EE | Olga V. Kel-Margoulis, Dmitri Tchekmenev, Alexander E. Kel, Ellen Gößling, Klaus Hornischer, Birgit Lewicki-Potapov, Edgar Wingender: Composition-sensitive analysis of the human genome for regulatory signals. In Silico Biology 3: 13 (2003) |
16 | V. Matys, Ellen Fricke, R. Geffers, Ellen Gößling, Martin Haubrock, R. Hehl, Klaus Hornischer, Dagmar Karas, Alexander E. Kel, Olga V. Kel-Margoulis, Dorothee-U. Kloos, Sigrid Land, Birgit Lewicki-Potapov, Holger Michael, Richard Münch, Ingmar Reuter, Stella Rotert, H. Saxel, Maurice Scheer, S. Thiele, Edgar Wingender: TRANSFAC®: transcriptional regulation, from patterns to profiles. Nucleic Acids Research 31(1): 374-378 (2003) | |
15 | Alexander E. Kel, Ellen Gößling, Ingmar Reuter, Evgeny Cheremushkin, Olga V. Kel-Margoulis, Edgar Wingender: MATCHTM: a tool for searching transcription factor binding sites in DNA sequences. Nucleic Acids Research 31(13): 3576-3579 (2003) | |
2002 | ||
14 | EE | Olga V. Kel-Margoulis, T. G. Ivanova, Edgar Wingender, Alexander E. Kel: Automatic Annotation of Genomic Regulatory Sequences by Searching for Composite Clusters. Pacific Symposium on Biocomputing 2002: 187-198 |
13 | Olga V. Kel-Margoulis, Alexander E. Kel, Ingmar Reuter, Igor Deineko, Edgar Wingender: TRANSCompel®: a database on composite regulatory elements in eukaryotic genes. Nucleic Acids Research 30(1): 332-334 (2002) | |
2001 | ||
12 | Ellen Gößling, Olga V. Kel-Margoulis, Alexander E. Kel, Edgar Wingender: MATCHTM - a tool for searching transcription factor binding sites in DNA sequences. Application for the analysis of human chromosomes. German Conference on Bioinformatics 2001: 158-161 | |
11 | Olga V. Kel-Margoulis, Igor Deineko, Ingmar Reuter, Edgar Wingender, Alexander E. Kel: TRANSCompel® - a professional database on composite regulatory elements in eukaryotic genes. German Conference on Bioinformatics 2001: 185-187 | |
10 | Alexander E. Kel, Olga V. Kel-Margoulis, T. G. Ivanova, Edgar Wingender: ClusterScan: A Tool for Automatic Annotation of Genomic Regulatory Sequences by Searching for Composite Clusters. German Conference on Bioinformatics 2001: 96-101 | |
2000 | ||
9 | Alexander E. Kel, Igor Deineko, Olga V. Kel-Margoulis, Edgar Wingender, Vadim Ratner: Modeling of Gene Regulatory Network of Cell Cycle Control. Role of E2F Feedback Loops. German Conference on Bioinformatics 2000: 107-114 | |
8 | Nikolay A. Kolchanov, Olga A. Podkolodnaya, Elena A. Ananko, Elena V. Ignatieva, Irina L. Stepanenko, Olga V. Kel-Margoulis, Alexander E. Kel, Tatyana I. Merkulova, T. N. Goryachkovskaya, T. V. Busygina, F. A. Kolpakov, Nikolay L. Podkolodny, Andrey N. Naumochkin, I. M. Korostishevskaya, Aida G. Romashchenko, G. Christian Overton: Transcription Regulatory Regions Database (TRRD): its status in 2000. Nucleic Acids Research 28(1): 298-301 (2000) | |
7 | Olga V. Kel-Margoulis, Aida G. Romashchenko, Nikolay A. Kolchanov, Edgar Wingender, Alexander E. Kel: COMPEL: a database on composite regulatory elements providing combinatorial transcriptional regulation. Nucleic Acids Research 28(1): 311-315 (2000) | |
1999 | ||
6 | Alexander E. Kel, Olga V. Kel-Margoulis, Edgar Wingender: E2F composite units in promoters of cell cycle genes. German Conference on Bioinformatics 1999: 148-154 | |
5 | Nikolay A. Kolchanov, Elena A. Ananko, Olga A. Podkolodnaya, Elena V. Ignatieva, Irina L. Stepanenko, Olga V. Kel-Margoulis, Alexander E. Kel, Tatyana I. Merkulova, T. N. Goryachkovskaya, T. V. Busygina, F. A. Kolpakov, Nikolay L. Podkolodny, Andrey N. Naumochkin, Aida G. Romashchenko: Transcription Regulatory Regions Database (TRRD): its status in 1999. Nucleic Acids Research 27(1): 303-306 (1999) | |
4 | T. Heinemeyer, Xin Chen, Holger Karas, Alexander E. Kel, Olga V. Kel-Margoulis, Ines Liebich, T. Meinhardt, Ingmar Reuter, Frank Schacherer, Edgar Wingender: Expanding the TRANSFAC database towards an expert system of regulatory molecular mechanisms. Nucleic Acids Research 27(1): 318-322 (1999) | |
1998 | ||
3 | Alexander E. Kel, Olga V. Kel-Margoulis, Vladimir N. Babenko, Nikolay A. Kolchanov, Edgar Wingender: Combinatorial identification of promoters induced upon immune cell activation. German Conference on Bioinformatics 1998 | |
2 | T. Heinemeyer, Edgar Wingender, Ingmar Reuter, Henning Hermjakob, Alexander E. Kel, Olga V. Kel-Margoulis, Elena V. Ignatieva, Elena A. Ananko, Olga A. Podkolodnaya, F. A. Kolpakov, Nikolay L. Podkolodny, Nikolay A. Kolchanov: Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL. Nucleic Acids Research 26(1): 362-367 (1998) | |
1997 | ||
1 | Edgar Wingender, Alexander E. Kel, Olga V. Kel-Margoulis, Holger Karas, T. Heinemeyer, P. Dietze, R. Knüppel, Aida G. Romashchenko, Nikolay A. Kolchanov: TRANSFAC, TRRD and COMPEL: towards a federated database system on transcriptional regulation. Nucleic Acids Research 25(1): 265-268 (1997) |