2006 |
23 | EE | Alexander E. Kel,
Tatiana Konovalova,
T. Waleev,
Evgeny Cheremushkin,
Olga V. Kel-Margoulis,
Edgar Wingender:
Composite Module Analyst: a fitness-based tool for identification of transcription factor binding site combinations.
Bioinformatics 22(10): 1190-1197 (2006) |
22 | EE | V. Matys,
Olga V. Kel-Margoulis,
Ellen Fricke,
Ines Liebich,
Sigrid Land,
A. Barre-Dirrie,
Ingmar Reuter,
D. Chekmenev,
Mathias Krull,
Klaus Hornischer,
Nico Voss,
P. Stegmaier,
Birgit Lewicki-Potapov,
H. Saxel,
Alexander E. Kel,
Edgar Wingender:
TRANSFAC® and its module TRANSCompel®: transcriptional gene regulation in eukaryotes.
Nucleic Acids Research 34(Database-Issue): 108-110 (2006) |
21 | EE | Mathias Krull,
Susanne Pistor,
Nico Voss,
Alexander E. Kel,
Ingmar Reuter,
Deborah Kronenberg,
Holger Michael,
Knut Schwarzer,
Anatolij Potapov,
Claudia Choi,
Olga V. Kel-Margoulis,
Edgar Wingender:
TRANSPATH®: an information resource for storing and visualizing signaling pathways and their pathological aberrations.
Nucleic Acids Research 34(Database-Issue): 546-551 (2006) |
20 | EE | T. Waleev,
D. Shtokalo,
Tatiana Konovalova,
Nico Voss,
Evgeny Cheremushkin,
P. Stegmaier,
Olga V. Kel-Margoulis,
Edgar Wingender,
Alexander E. Kel:
Composite Module Analyst: identification of transcription factor binding site combinations using genetic algorithm.
Nucleic Acids Research 34(Web-Server-Issue): 541-545 (2006) |
2005 |
19 | | Alexander E. Kel,
Tatiana Konovalova,
Tagir Valeev,
Evgeny Cheremushkin,
Olga V. Kel-Margoulis,
Edgar Wingender:
Composite Module Analyst: A Fitness-Based Tool for Prediction of Transcription Regulation.
German Conference on Bioinformatics 2005: 63-75 |
2004 |
18 | | Alexander E. Kel,
Nico Voss,
Tatiana Konovalova,
Dmitri Tchekmenev,
P. Wabnitz,
Olga V. Kel-Margoulis,
Edgar Wingender:
From Composite Patters to Pathways - Prediction of Key Regulators of Gene Expression.
German Conference on Bioinformatics 2004: 189-198 |
2003 |
17 | EE | Olga V. Kel-Margoulis,
Dmitri Tchekmenev,
Alexander E. Kel,
Ellen Gößling,
Klaus Hornischer,
Birgit Lewicki-Potapov,
Edgar Wingender:
Composition-sensitive analysis of the human genome for regulatory signals.
In Silico Biology 3: 13 (2003) |
16 | | V. Matys,
Ellen Fricke,
R. Geffers,
Ellen Gößling,
Martin Haubrock,
R. Hehl,
Klaus Hornischer,
Dagmar Karas,
Alexander E. Kel,
Olga V. Kel-Margoulis,
Dorothee-U. Kloos,
Sigrid Land,
Birgit Lewicki-Potapov,
Holger Michael,
Richard Münch,
Ingmar Reuter,
Stella Rotert,
H. Saxel,
Maurice Scheer,
S. Thiele,
Edgar Wingender:
TRANSFAC®: transcriptional regulation, from patterns to profiles.
Nucleic Acids Research 31(1): 374-378 (2003) |
15 | | Alexander E. Kel,
Ellen Gößling,
Ingmar Reuter,
Evgeny Cheremushkin,
Olga V. Kel-Margoulis,
Edgar Wingender:
MATCHTM: a tool for searching transcription factor binding sites in DNA sequences.
Nucleic Acids Research 31(13): 3576-3579 (2003) |
2002 |
14 | EE | Olga V. Kel-Margoulis,
T. G. Ivanova,
Edgar Wingender,
Alexander E. Kel:
Automatic Annotation of Genomic Regulatory Sequences by Searching for Composite Clusters.
Pacific Symposium on Biocomputing 2002: 187-198 |
13 | | Olga V. Kel-Margoulis,
Alexander E. Kel,
Ingmar Reuter,
Igor Deineko,
Edgar Wingender:
TRANSCompel®: a database on composite regulatory elements in eukaryotic genes.
Nucleic Acids Research 30(1): 332-334 (2002) |
2001 |
12 | | Ellen Gößling,
Olga V. Kel-Margoulis,
Alexander E. Kel,
Edgar Wingender:
MATCHTM - a tool for searching transcription factor binding sites in DNA sequences. Application for the analysis of human chromosomes.
German Conference on Bioinformatics 2001: 158-161 |
11 | | Olga V. Kel-Margoulis,
Igor Deineko,
Ingmar Reuter,
Edgar Wingender,
Alexander E. Kel:
TRANSCompel® - a professional database on composite regulatory elements in eukaryotic genes.
German Conference on Bioinformatics 2001: 185-187 |
10 | | Alexander E. Kel,
Olga V. Kel-Margoulis,
T. G. Ivanova,
Edgar Wingender:
ClusterScan: A Tool for Automatic Annotation of Genomic Regulatory Sequences by Searching for Composite Clusters.
German Conference on Bioinformatics 2001: 96-101 |
2000 |
9 | | Alexander E. Kel,
Igor Deineko,
Olga V. Kel-Margoulis,
Edgar Wingender,
Vadim Ratner:
Modeling of Gene Regulatory Network of Cell Cycle Control. Role of E2F Feedback Loops.
German Conference on Bioinformatics 2000: 107-114 |
8 | | Nikolay A. Kolchanov,
Olga A. Podkolodnaya,
Elena A. Ananko,
Elena V. Ignatieva,
Irina L. Stepanenko,
Olga V. Kel-Margoulis,
Alexander E. Kel,
Tatyana I. Merkulova,
T. N. Goryachkovskaya,
T. V. Busygina,
F. A. Kolpakov,
Nikolay L. Podkolodny,
Andrey N. Naumochkin,
I. M. Korostishevskaya,
Aida G. Romashchenko,
G. Christian Overton:
Transcription Regulatory Regions Database (TRRD): its status in 2000.
Nucleic Acids Research 28(1): 298-301 (2000) |
7 | | Olga V. Kel-Margoulis,
Aida G. Romashchenko,
Nikolay A. Kolchanov,
Edgar Wingender,
Alexander E. Kel:
COMPEL: a database on composite regulatory elements providing combinatorial transcriptional regulation.
Nucleic Acids Research 28(1): 311-315 (2000) |
1999 |
6 | | Alexander E. Kel,
Olga V. Kel-Margoulis,
Edgar Wingender:
E2F composite units in promoters of cell cycle genes.
German Conference on Bioinformatics 1999: 148-154 |
5 | | Nikolay A. Kolchanov,
Elena A. Ananko,
Olga A. Podkolodnaya,
Elena V. Ignatieva,
Irina L. Stepanenko,
Olga V. Kel-Margoulis,
Alexander E. Kel,
Tatyana I. Merkulova,
T. N. Goryachkovskaya,
T. V. Busygina,
F. A. Kolpakov,
Nikolay L. Podkolodny,
Andrey N. Naumochkin,
Aida G. Romashchenko:
Transcription Regulatory Regions Database (TRRD): its status in 1999.
Nucleic Acids Research 27(1): 303-306 (1999) |
4 | | T. Heinemeyer,
Xin Chen,
Holger Karas,
Alexander E. Kel,
Olga V. Kel-Margoulis,
Ines Liebich,
T. Meinhardt,
Ingmar Reuter,
Frank Schacherer,
Edgar Wingender:
Expanding the TRANSFAC database towards an expert system of regulatory molecular mechanisms.
Nucleic Acids Research 27(1): 318-322 (1999) |
1998 |
3 | | Alexander E. Kel,
Olga V. Kel-Margoulis,
Vladimir N. Babenko,
Nikolay A. Kolchanov,
Edgar Wingender:
Combinatorial identification of promoters induced upon immune cell activation.
German Conference on Bioinformatics 1998 |
2 | | T. Heinemeyer,
Edgar Wingender,
Ingmar Reuter,
Henning Hermjakob,
Alexander E. Kel,
Olga V. Kel-Margoulis,
Elena V. Ignatieva,
Elena A. Ananko,
Olga A. Podkolodnaya,
F. A. Kolpakov,
Nikolay L. Podkolodny,
Nikolay A. Kolchanov:
Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL.
Nucleic Acids Research 26(1): 362-367 (1998) |
1997 |
1 | | Edgar Wingender,
Alexander E. Kel,
Olga V. Kel-Margoulis,
Holger Karas,
T. Heinemeyer,
P. Dietze,
R. Knüppel,
Aida G. Romashchenko,
Nikolay A. Kolchanov:
TRANSFAC, TRRD and COMPEL: towards a federated database system on transcriptional regulation.
Nucleic Acids Research 25(1): 265-268 (1997) |