W. John Wilbur

2009
39	EE	Zhiyong Lu, Won Kim, W. John Wilbur: Evaluation of query expansion using MeSH in PubMed. Inf. Retr. 12(1): 69-80 (2009)
38	EE	Lana Yeganova, Donald C. Comeau, Won Kim, W. John Wilbur: How to interpret PubMed queries and why it matters. JASIST 60(2): 264-274 (2009)
2008
37	EE	Hagit Shatkay, Fengxia Pan, Andrey Rzhetsky, W. John Wilbur: Multi-dimensional classification of biomedical text: Toward automated, practical provision of high-utility text to diverse users. Bioinformatics 24(18): 2086-2093 (2008)
36	EE	Jimmy Lin, Michael DiCuccio, Vahan Grigoryan, W. John Wilbur: Navigating information spaces: A case study of related article search in PubMed. Inf. Process. Manage. 44(5): 1771-1783 (2008)
2007
35	EE	Rezarta Islamaj Dogan, Lise Getoor, W. John Wilbur: Characterizing RNA Secondary-Structure Features and Their Effects on Splice-Site Prediction. ICDM Workshops 2007: 89-94
34	EE	Dina Demner-Fushman, Susanne M. Humphrey, Nicholas C. Ide, Russell F. Loane, James G. Mork, Patrick Ruch, Miguel E. Ruiz, Lawrence H. Smith, W. John Wilbur, Alan R. Aronson: Combining Resources to Find Answers to Biomedical Questions. TREC 2007
33	EE	Jimmy Lin, W. John Wilbur: Syntactic sentence compression in the biomedical domain: facilitating access to related articles. Inf. Retr. 10(4-5): 393-414 (2007)
32	EE	Hong Yu, Won Kim, Vasileios Hatzivassiloglou, W. John Wilbur: Using MEDLINE as a knowledge source for disambiguating abbreviations and acronyms in full-text biomedical journal articles. Journal of Biomedical Informatics 40(2): 150-159 (2007)
31	EE	Rezarta Islamaj Dogan, Lise Getoor, W. John Wilbur, Stephen M. Mount: SplicePort - An interactive splice-site analysis tool. Nucleic Acids Research 35(Web-Server-Issue): 285-291 (2007)
2006
30	EE	Rezarta Islamaj Dogan, Lise Getoor, W. John Wilbur: A Feature Generation Algorithm for Sequences with Application to Splice-Site Prediction. PKDD 2006: 553-560
29	EE	Dina Demner-Fushman, Susanne M. Humphrey, Nicholas C. Ide, Russell F. Loane, Lawrence H. Smith, Lorraine K. Tanabe, W. John Wilbur, Alan R. Aronson, Dina Demner-Fushman, Patrick Ruch, Miguel E. Ruiz: Finding Relevant Passages in Scientific Articles: Fusion of Automatic Approaches vs. an Interactive Team Effort. TREC 2006
28	EE	Hong Yu, Won Kim, Vasileios Hatzivassiloglou, W. John Wilbur: A large scale, corpus-based approach for automatically disambiguating biomedical abbreviations. ACM Trans. Inf. Syst. 24(3): 380-404 (2006)
27	EE	W. John Wilbur, Won Kim, Natalie Xie: Spelling correction in the PubMed search engine. Inf. Retr. 9(5): 543-564 (2006)
2005
26	EE	W. John Wilbur, Lana Yeganova, Won Kim: The Synergy Between PAV and AdaBoost. Machine Learning 61(1-3): 71-103 (2005)
2004
25	EE	Hong Yu, Won Kim, Vasileios Hatzivassiloglou, W. John Wilbur: Using MEDLINE as a Knowledge Source for Disambiguating Abbreviations in Full-Text Biomedical Journal Articles. CBMS 2004: 27-
24	EE	Lawrence H. Smith, Thomas C. Rindflesch, W. John Wilbur: MedPost: a part-of-speech tagger for bioMedical text. Bioinformatics 20(14): 2320-2321 (2004)
23	EE	Lana Yeganova, Lawrence H. Smith, W. John Wilbur: Identification of related gene/protein names based on an HMM of name variations. Computational Biology and Chemistry 28(2): 97-107 (2004)
22	EE	Lawrence H. Smith, W. John Wilbur: Retrieving definitional content for ontology development. Computational Biology and Chemistry 28(5-6): 387-391 (2004)
21	EE	Lorraine K. Tanabe, W. John Wilbur: Generation of a Large Gene/protein Lexicon by Morphological Pattern Analysis. J. Bioinformatics and Computational Biology 1(4): 611-626 (2004)
20	EE	Donald C. Comeau, W. John Wilbur: Non-word identification or spell checking without a dictionary. JASIST 55(2): 169-177 (2004)
19	EE	Andrey Rzhetsky, Ivan Iossifov, Tomohiro Koike, Michael Krauthammer, Pauline Kra, Mitzi Morris, Hong Yu, Pablo Ariel Duboué, Wubin Weng, W. John Wilbur: GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data. Journal of Biomedical Informatics 37(1): 43-53 (2004)
2003
18	EE	Lawrence H. Smith, Lana Yeganova, W. John Wilbur: Hidden Markov models and optimized sequence alignments. Computational Biology and Chemistry 27(1): 77-84 (2003)
2002
17		Lorraine K. Tanabe, W. John Wilbur: Tagging gene and protein names in full text articles. ACL Workshop on Natural Language Processing in the Biomedical Domain 2002: 9-13
16	EE	W. John Wilbur: A Thematic Analysis of the AIDS Literature. Pacific Symposium on Biocomputing 2002: 386-397
15		Lorraine K. Tanabe, W. John Wilbur: Tagging gene and protein names in biomedical text. Bioinformatics 18(8): 1124-1132 (2002)
14	EE	Hong Yu, Vasileios Hatzivassiloglou, Andrey Rzhetsky, W. John Wilbur: Automatically identifying gene/protein terms in MEDLINE abstracts. Journal of Biomedical Informatics 35(5-6): 322-330 (2002)
2001
13	EE	Won Kim, W. John Wilbur: Amino Acid Residue Environments and Predictions of Residue Type. Computers & Chemistry 25(4): 411-422 (2001)
12		Won Kim, W. John Wilbur: Corpus-based statistical screening for content-bearing terms. JASIST 52(3): 247-259 (2001)
2000
11	EE	Hagit Shatkay, W. John Wilbur: Finding Themes in Medline Documents: Probabilistic Similarity Search. ADL 2000: 183-192
10		Hagit Shatkay, Stephen Edwards, W. John Wilbur, Mark Boguski: Genes, Themes, and Microarrays: Using Information Retrieval for Large-Scale Gene Analysis. ISMB 2000: 317-328
9	EE	W. John Wilbur, Andrew F. Neuwald: A Theory of Information with Special Application to Search Problems. Computers & Chemistry 24(1): 33-42 (2000)
1998
8	EE	W. John Wilbur: The Knowledge in Multiple Human Relevance Judgments. ACM Trans. Inf. Syst. 16(2): 101-126 (1998)
7		W. John Wilbur: A Comparison of Group and Individual Performance Among Subject Experts and Untrained Workers at the Document Retrieval Task. JASIS 49(6): 517-529 (1998)
1996
6		W. John Wilbur: Human Subjectivity and Performance Limits in Document Retrieval. Inf. Process. Manage. 32(5): 515-527 (1996)
1994
5		W. John Wilbur, Leona Coffee: The Effectiveness of Document Neighboring in Search Enhancement. Inf. Process. Manage. 30(2): 253-266 (1994)
1993
4		W. John Wilbur: Retrieval Testing with Hypergeometric Document Models. JASIS 44(6): 340-351 (1993)
1992
3		W. John Wilbur: An information measure of retrieval performance. Inf. Syst. 17(4): 283-298 (1992)
2		W. John Wilbur: Retrieval Testing by the Comparison of Statistically Independent Retrieval Methods. JASIS 43(5): 358-370 (1992)
1984
1		David J. Lipman, W. John Wilbur, Temple F. Smith, Michael S. Waterman: On the statistical significance of nucleic acid similarities. Nucleic Acids Research 12(1): 215-226 (1984)

Coauthor Index

1	Alan R. Aronson	[29] [34]
2	Mark Boguski	[10]
3	Leona Coffee	[5]
4	Donald C. Comeau	[20] [38]
5	Dina Demner-Fushman	[29] [34]
6	Michael DiCuccio	[36]
7	Rezarta Islamaj Dogan	[30] [31] [35]
8	Pablo Ariel Duboué	[19]
9	Stephen Edwards	[10]
10	Lise Getoor	[30] [31] [35]
11	Vahan Grigoryan	[36]
12	Vasileios Hatzivassiloglou	[14] [25] [28] [32]
13	Susanne M. Humphrey	[29] [34]
14	Nicholas C. Ide	[29] [34]
15	Ivan Iossifov	[19]
16	Won Kim	[12] [13] [25] [26] [27] [28] [32] [38] [39]
17	Tomohiro Koike	[19]
18	Pauline Kra	[19]
19	Michael Krauthammer	[19]
20	Jimmy Lin	[33] [36]
21	David J. Lipman	[1]
22	Russell F. Loane	[29] [34]
23	Zhiyong Lu	[39]
24	James G. Mork	[34]
25	Mitzi Morris	[19]
26	Stephen M. Mount	[31]
27	Andrew F. Neuwald	[9]
28	Fengxia Pan	[37]
29	Thomas C. Rindflesch	[24]
30	Patrick Ruch	[29] [34]
31	Miguel E. Ruiz	[29] [34]
32	Andrey Rzhetsky	[14] [19] [37]
33	Hagit Shatkay	[10] [11] [37]
34	Lawrence H. Smith	[18] [22] [23] [24] [29] [34]
35	Temple F. Smith	[1]
36	Lorraine K. Tanabe	[15] [17] [21] [29]
37	Michael S. Waterman	[1]
38	Wubin Weng	[19]
39	Natalie Xie	[27]
40	Lana Yeganova	[18] [23] [26] [38]
41	Hong Yu	[14] [19] [25] [28] [32]

Colors in the list of coauthors