| 2008 |
|---|
| 90 | EE | Nuno Bandeira,
Jesper V. Olsen,
Matthias Mann,
Pavel A. Pevzner:
Multi-spectra peptide sequencing and its applications to multistage mass spectrometry.
ISMB 2008: 416-423 |
| 89 | EE | Nuno Bandeira,
Julio Ng,
Dario Meluzzi,
Roger G. Linington,
Pieter Dorrestein,
Pavel A. Pevzner:
De Novo Sequencing of Nonribosomal Peptides.
RECOMB 2008: 181-195 |
| 88 | EE | Max A. Alekseyev,
Pavel A. Pevzner:
Multi-break rearrangements and chromosomal evolution.
Theor. Comput. Sci. 395(2-3): 193-202 (2008) |
| 2007 |
|---|
| 87 | EE | Pavel A. Pevzner:
Protein Identification via Spectral Networks Analysis.
APBC 2007: 5 |
| 86 | EE | Max A. Alekseyev,
Pavel A. Pevzner:
Whole genome duplications, multi-break rearrangements, and genome halving problem.
SODA 2007: 665-679 |
| 85 | EE | Pavel A. Pevzner:
Shotgun Protein Sequencing.
WABI 2007: 1 |
| 84 | EE | Sorin Istrail,
Pavel A. Pevzner,
Ron Shamir:
Preface.
Discrete Applied Mathematics 155(6-7): 673-674 (2007) |
| 83 | EE | Degui Zhi,
Uri Keich,
Pavel A. Pevzner,
Steffen Heber,
Haixu Tang:
Correcting Base-Assignment Errors in Repeat Regions of Shotgun Assembly.
IEEE/ACM Trans. Comput. Biology Bioinform. 4(1): 54-64 (2007) |
| 82 | EE | Max A. Alekseyev,
Pavel A. Pevzner:
Colored de Bruijn Graphs and the Genome Halving Problem.
IEEE/ACM Trans. Comput. Biology Bioinform. 4(1): 98-107 (2007) |
| 81 | EE | Richard M. Karp,
Ming Li,
Pavel A. Pevzner,
Ron Shamir:
Special issue on computational molecular biology.
J. Comput. Syst. Sci. 73(7): 1023 (2007) |
| 80 | EE | Max A. Alekseyev,
Pavel A. Pevzner:
Whole Genome Duplications and Contracted Breakpoint Graphs.
SIAM J. Comput. 36(6): 1748-1763 (2007) |
| 2006 |
|---|
| 79 | | Alberto Apostolico,
Concettina Guerra,
Sorin Istrail,
Pavel A. Pevzner,
Michael S. Waterman:
Research in Computational Molecular Biology, 10th Annual International Conference, RECOMB 2006, Venice, Italy, April 2-5, 2006, Proceedings
Springer 2006 |
| 78 | EE | Ket Fah Chong,
Kang Ning,
Hon Wai Leong,
Pavel A. Pevzner:
Characterization of Multi-Charge Mass Spectra for Peptide Sequencing.
APBC 2006: 109-119 |
| 77 | EE | Neil C. Jones,
Pavel A. Pevzner:
Comparative genomics reveals unusually long motifs in mammalian genomes.
ISMB (Supplement of Bioinformatics) 2006: 236-242 |
| 76 | EE | Nuno Bandeira,
Dekel Tsur,
Ari Frank,
Pavel A. Pevzner:
A New Approach to Protein Identification.
RECOMB 2006: 363-378 |
| 75 | EE | Ket Fah Chong,
Kang Ning,
Hon Wai Leong,
Pavel A. Pevzner:
Modeling and Characterization of Multi-charge Mass Spectra for Peptide Sequencing.
J. Bioinformatics and Computational Biology 4(6): 1329-1352 (2006) |
| 2005 |
|---|
| 74 | | Satoru Miyano,
Jill P. Mesirov,
Simon Kasif,
Sorin Istrail,
Pavel A. Pevzner,
Michael S. Waterman:
Research in Computational Molecular Biology, 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings
Springer 2005 |
| 73 | EE | Dekel Tsur,
Stephen Tanner,
Ebrahim Zandi,
Vineet Bafna,
Pavel A. Pevzner:
Identification of Post-Translational Modifications via Blind Search of Mass-Spectra.
CSB 2005: 157-166 |
| 72 | EE | Alkes L. Price,
Neil C. Jones,
Pavel A. Pevzner:
De novo identification of repeat families in large genomes.
ISMB (Supplement of Bioinformatics) 2005: 351-358 |
| 71 | EE | Ari Frank,
Stephen Tanner,
Pavel A. Pevzner:
Peptide Sequence Tags for Fast Database Search in Mass-Spectrometry.
RECOMB 2005: 326-341 |
| 70 | EE | Richard M. Karp,
Ming Li,
Pavel A. Pevzner,
Ron Shamir:
Guest Editors' foreword.
J. Comput. Syst. Sci. 70(3): 283- (2005) |
| 2004 |
|---|
| 69 | EE | Max A. Alekseyev,
Pavel A. Pevzner:
Genome Halving Problem Revisited.
FSTTCS 2004: 1-15 |
| 68 | EE | Benjamin J. Raphael,
Pavel A. Pevzner:
Reconstructing tumor amplisomes.
ISMB/ECCB (Supplement of Bioinformatics) 2004: 265-273 |
| 67 | EE | Pavel A. Pevzner,
Haixu Tang,
Glenn Tesler:
De novo repeat classification and fragment assembly.
RECOMB 2004: 213-222 |
| 66 | EE | Mark Chaisson,
Pavel A. Pevzner,
Haixu Tang:
Fragment assembly with short reads.
Bioinformatics 20(13): 2067-2074 (2004) |
| 65 | EE | Pavel A. Pevzner:
Educating biologists in the 21st century: bioinformatics scientists versus bioinformatics technicians.
Bioinformatics 20(14): 2159-2161 (2004) |
| 64 | EE | Andrew B. Kahng,
Ion I. Mandoiu,
Pavel A. Pevzner,
Sherief Reda,
Alexander Zelikovsky:
Scalable Heuristics for Design of DNA Probe Arrays.
Journal of Computational Biology 11(2/3): 429-447 (2004) |
| 2003 |
|---|
| 63 | | Alkes L. Price,
Sriram Ramabhadran,
Pavel A. Pevzner:
Finding subtle motifs by branching from sample strings.
ECCB 2003: 149-155 |
| 62 | | Benjamin J. Raphael,
Stanislav Volik,
Colin Collins,
Pavel A. Pevzner:
Reconstructing tumor genome architectures.
ECCB 2003: 162-171 |
| 61 | EE | Eleazar Eskin,
Uri Keich,
Mikhail S. Gelfand,
Pavel A. Pevzner:
Genome-Wide Analysis of Bacterial Promoter Regions.
Pacific Symposium on Biocomputing 2003: 29-40 |
| 60 | EE | Andrew B. Kahng,
Ion I. Mandoiu,
Pavel A. Pevzner,
Sherief Reda,
Alexander Zelikovsky:
Engineering a scalable placement heuristic for DNA probe arrays.
RECOMB 2003: 148-156 |
| 59 | EE | Pavel A. Pevzner,
Glenn Tesler:
Transforming men into mice: the Nadeau-Taylor chromosomal breakage model revisited.
RECOMB 2003: 247-256 |
| 2002 |
|---|
| 58 | | Steffen Heber,
Max A. Alekseyev,
Sing-Hoi Sze,
Haixu Tang,
Pavel A. Pevzner:
Splicing graphs and EST assembly problem.
ISMB 2002: 181-188 |
| 57 | | Eleazar Eskin,
Pavel A. Pevzner:
Finding composite regulatory patterns in DNA sequences.
ISMB 2002: 354-363 |
| 56 | EE | Zufar Mulyukov,
Pavel A. Pevzner:
EULER-PCR: Finishing Experiments for Repeat Resolution.
Pacific Symposium on Biocomputing 2002: 199-210 |
| 55 | EE | Sing-Hoi Sze,
Mikhail S. Gelfand,
Pavel A. Pevzner:
Finding Weak Motifs in DNA Sequences.
Pacific Symposium on Biocomputing 2002: 235-246 |
| 54 | EE | Uri Keich,
Pavel A. Pevzner:
Finding motifs in the twilight zone.
RECOMB 2002: 195-204 |
| 53 | EE | Andrew B. Kahng,
Ion I. Mandoiu,
Pavel A. Pevzner,
Sherief Reda,
Alexander Zelikovsky:
Border Length Minimization in DNA Array Design.
WABI 2002: 435-448 |
| 52 | | Uri Keich,
Pavel A. Pevzner:
Finding motifs in the twilight zone.
Bioinformatics 18(10): 1374-1381 (2002) |
| 51 | | Uri Keich,
Pavel A. Pevzner:
U Subtle motifs: defining the limits of motif finding algorithms.
Bioinformatics 18(10): 1382-1390 (2002) |
| 50 | EE | Ming Li,
Pavel A. Pevzner,
Ron Shamir:
Foreword.
J. Comput. Syst. Sci. 65(3): 441 (2002) |
| 2001 |
|---|
| 49 | | Pavel A. Pevzner,
Haixu Tang:
Fragment assembly with double-barreled data.
ISMB (Supplement of Bioinformatics) 2001: 225-233 |
| 48 | EE | Abdullah N. Arslan,
Ömer Egecioglu,
Pavel A. Pevzner:
A new approach to sequence comparison: normalized sequence alignment.
RECOMB 2001: 2-11 |
| 47 | EE | Pavel A. Pevzner,
Haixu Tang,
Michael S. Waterman:
A new approach to fragment assembly in DNA sequencing.
RECOMB 2001: 256-267 |
| 46 | | Abdullah N. Arslan,
Ömer Egecioglu,
Pavel A. Pevzner:
A new approach to sequence comparison: normalized sequence alignment.
Bioinformatics 17(4): 327-337 (2001) |
| 45 | EE | Leslie Ann Goldberg,
Paul W. Goldberg,
Mike Paterson,
Pavel A. Pevzner,
Süleyman Cenk Sahinalp,
Elizabeth Sweedyk:
The Complexity of Gene Placement.
J. Algorithms 41(2): 225-243 (2001) |
| 2000 |
|---|
| 44 | | Pavel A. Pevzner,
Sing-Hoi Sze:
Combinatorial Approaches to Finding Subtle Signals in DNA Sequences.
ISMB 2000: 269-278 |
| 43 | EE | Pavel A. Pevzner,
Vlado Dancík,
Chris L. Tang:
Mutation-tolerant protein identification by mass-spectrometry.
RECOMB 2000: 231-236 |
| 42 | | Sorin Istrail,
Pavel A. Pevzner,
Ron Shamir:
Foreword.
Discrete Applied Mathematics 104(1-3): 1-2 (2000) |
| 41 | | Pavel A. Pevzner,
Vlado Dancík,
Chris L. Tang:
Mutation-Tolerant Protein Identification by Mass Spectrometry.
Journal of Computational Biology 7(6): 777-787 (2000) |
| 1999 |
|---|
| 40 | | Earl Hubbell,
Pavel A. Pevzner:
Fidelity Probes for DNA Arrays.
ISMB 1999: 113-117 |
| 39 | EE | Andrew V. Goldberg,
Paul W. Goldberg,
Pavel A. Pevzner,
Süleyman Cenk Sahinalp,
Elizabeth Sweedyk,
Andrew V. Goldberg,
Kostas Tsioutsiouliklis:
Cut Tree Algorithms.
SODA 1999: 376-385 |
| 38 | EE | Leslie Ann Goldberg,
Paul W. Goldberg,
Mike Paterson,
Pavel A. Pevzner,
Süleyman Cenk Sahinalp,
Elizabeth Sweedyk:
The Complexity of Gene Placement.
SODA 1999: 386-395 |
| 37 | EE | Sridhar Hannenhalli,
Pavel A. Pevzner:
Transforming Cabbage into Turnip: Polynomial Algorithm for Sorting Signed Permutations by Reversals.
J. ACM 46(1): 1-27 (1999) |
| 36 | | Vlado Dancík,
Theresa A. Addona,
Karl R. Clauser,
James E. Vath,
Pavel A. Pevzner:
De Novo Peptide Sequencing via Tandem Mass Spectrometry.
Journal of Computational Biology 6(3/4): (1999) |
| 1998 |
|---|
| 35 | | Andrey A. Mironov,
Pavel A. Pevzner:
SST versus EST in Gene Recognition (Invited Paper).
SPIRE 1998: 60-64 |
| 34 | | Sing-Hoi Sze,
Mikhail A. Roytberg,
Mikhail S. Gelfand,
Andrey A. Mironov,
Tatiana V. Astakhova,
Pavel A. Pevzner:
Algorithms and software for support of gene identification experiments.
Bioinformatics 14(1): 14-19 (1998) |
| 33 | EE | Sorin Istrail,
Pavel A. Pevzner,
Ron Shamir:
Foreword.
Discrete Applied Mathematics 88(1-3): 3-6 (1998) |
| 32 | EE | Vineet Bafna,
Pavel A. Pevzner:
Sorting by Transpositions.
SIAM J. Discrete Math. 11(2): 224-240 (1998) |
| 1997 |
|---|
| 31 | | Guorong Xu,
Sing-Hoi Sze,
Cheng-Pin Liu,
Pavel A. Pevzner,
Norman Arnheim:
Gene Hunting without Sequencing Genomis Clones: the "Twenty Questions" game with genes.
German Conference on Bioinformatics 1997: 17 |
| 30 | EE | Sing-Hoi Sze,
Pavel A. Pevzner:
Las Vegas algorithms for gene recognition: suboptimal and error-tolerant spliced alignment.
RECOMB 1997: 300-309 |
| 29 | | I. Belyi,
Pavel A. Pevzner:
Software for DNA sequencing by hybridization.
Computer Applications in the Biosciences 13(2): 205-210 (1997) |
| 28 | | Michael S. Waterman,
Sorin Istrail,
Pavel A. Pevzner:
Selected Papers from RECOMB'97 - Preface.
Journal of Computational Biology 4(3): 215-216 (1997) |
| 27 | | Sing-Hoi Sze,
Pavel A. Pevzner:
Las Vegas Algorithms for Gene Recognition: Suboptimal and Error-Tolerant Spliced Alignment.
Journal of Computational Biology 4(3): 297-310 (1997) |
| 26 | EE | Vineet Bafna,
Eugene L. Lawler,
Pavel A. Pevzner:
Approximation Algorithms for Multiple Sequence Alignment.
Theor. Comput. Sci. 182(1-2): 233-244 (1997) |
| 1996 |
|---|
| 25 | | Mikhail S. Gelfand,
Andrey A. Mironov,
Pavel A. Pevzner:
Spliced Alignment: A New Approach to Gene Recognition.
CPM 1996: 141-158 |
| 24 | | Sridhar Hannenhalli,
Pavel A. Pevzner:
To Cut... or Not to Cut (Applications of Comparative Physical Maps in Molecular Evolution).
SODA 1996: 304-313 |
| 23 | | Sridhar Hannenhalli,
W. Feldman,
H. F. Lewis,
Steven Skiena,
Pavel A. Pevzner:
Positional sequencing by hybridization.
Computer Applications in the Biosciences 12(1): 19-24 (1996) |
| 22 | | Vineet Bafna,
Pavel A. Pevzner:
Genome Rearrangements and Sorting by Reversals.
SIAM J. Comput. 25(2): 272-289 (1996) |
| 1995 |
|---|
| 21 | | Sridhar Hannenhalli,
Pavel A. Pevzner:
Transforming Men into Mice (Polynomial Algorithm for Genomic Distance Problem).
FOCS 1995: 581-592 |
| 20 | | Pavel A. Pevzner,
Michael S. Waterman:
Open Combinatorial Problems in Computational Molecular Biology.
ISTCS 1995: 158-173 |
| 19 | | Vineet Bafna,
Pavel A. Pevzner:
Sorting Permutations by Transpositions.
SODA 1995: 614-623 |
| 18 | EE | Sridhar Hannenhalli,
Pavel A. Pevzner:
Transforming cabbage into turnip: polynomial algorithm for sorting signed permutations by reversals.
STOC 1995: 178-189 |
| 17 | | Sridhar Hannenhalli,
Pavel A. Pevzner:
Towards a Computational Theory of Genome Rearrangements.
Computer Science Today 1995: 184-202 |
| 16 | | Pavel A. Pevzner,
Michael S. Waterman:
Multiple Filtration and Approximate Pattern Matching.
Algorithmica 13(1/2): 135-154 (1995) |
| 15 | | Pavel A. Pevzner:
DNA Physical Mapping and Alternating Eulerian Cycles in Colored Graphs.
Algorithmica 13(1/2): 77-105 (1995) |
| 14 | | Andrey A. Mironov,
N. N. Alexandrov,
N. Yu. Bogodarova,
A. Grigorjev,
V. F. Lebedev,
L. V. Lunovskaya,
M. E. Truchan,
Pavel A. Pevzner:
DNASUN: a package of computer programs for the biotechnology laboratory.
Computer Applications in the Biosciences 11(3): 331-335 (1995) |
| 1994 |
|---|
| 13 | | Vineet Bafna,
Eugene L. Lawler,
Pavel A. Pevzner:
Approximation Algorithms for Multiple Sequence Alignment.
CPM 1994: 43-53 |
| 12 | | Xiaoqiu Huang,
Pavel A. Pevzner,
Webb Miller:
Parametric Recomuting in Alignment Graphs.
CPM 1994: 87-101 |
| 11 | | Pavel A. Pevzner,
Robert J. Lipshutz:
Towards DNA Sequencing Chips.
MFCS 1994: 143-158 |
| 10 | EE | Pavel A. Pevzner:
Rearrangements of DNA Sequences and SBH.
Computers & Chemistry 18(3): 221-223 (1994) |
| 1993 |
|---|
| 9 | | Pavel A. Pevzner,
Michael S. Waterman:
A Fast Filtration Algorithm for the Substring Matching Problem.
CPM 1993: 197-214 |
| 8 | | Martin Vingron,
Pavel A. Pevzner:
Multiple Sequence Comparison and n-Dimensional Image Reconstruction.
CPM 1993: 243-253 |
| 7 | | Vineet Bafna,
Pavel A. Pevzner:
Genome Rearrangements and Sorting by Reversals
FOCS 1993: 148-157 |
| 1992 |
|---|
| 6 | | Pavel A. Pevzner:
Multiple Alignment with Guaranteed Error Bounds and Communication Cost.
CPM 1992: 205-213 |
| 5 | | Pavel A. Pevzner,
Michael S. Waterman:
Matrix Longest Common Subsequence Problem, Duality and Hibert Bases.
CPM 1992: 79-89 |
| 4 | | Pavel A. Pevzner:
Statistical distance between texts and filtration methods in sequence comparison.
Computer Applications in the Biosciences 8(2): 121-127 (1992) |
| 3 | | Mikhail S. Gelfand,
C. G. Kozhukhin,
Pavel A. Pevzner:
Extendable words in nucleotide sequences.
Computer Applications in the Biosciences 8(2): 129-135 (1992) |
| 2 | EE | Pavel A. Pevzner:
Nucleotide Sequences Versus Markov Models.
Computers & Chemistry 16(2): 103-106 (1992) |
| 1991 |
|---|
| 1 | | C. G. Kozhukhin,
Pavel A. Pevzner:
Genome inhomogeneity is determined mainly by WW and SS dinucleotides.
Computer Applications in the Biosciences 7(1): 39-49 (1991) |
