11. PSB 2006:
Wailea,
Maui,
Hawaii,
USA
Russ B. Altman, Tiffany Murray, Teri E. Klein, A. Keith Dunker, Lawrence Hunter (Eds.):
Biocomputing 2006, Proceedings of the Pacific Symposium, Maui, Hawaii, USA, 3-7 January 2006.
World Scientific 2006, ISBN 981-256-463-2 BibTeX
Linking Biomedical Information Through Text Mining
- K. Bretonnel Cohen, Olivier Bodenreider, Lynette Hirschman:
Session Introduction.
1-3
Electronic Edition (link) BibTeX
- Hong-Woo Chun, Yoshimasa Tsuruoka, Jin-Dong Kim, Rie Shiba, Naoki Nagata, Teruyoshi Hishiki, Jun-ichi Tsujii:
Extraction of Gene-Disease Relations from Medline Using Domain Dictionaries and Machine Learning.
4-15
Electronic Edition (link) BibTeX
- Annette Höglund, Torsten Blum, Scott Brady, Pierre Dönnes, John San Miguel, Matthew Rocheford, Oliver Kohlbacher, Hagit Shatkay:
Significantly Improved Prediction of Subcellular Localization by Integrating Text and Protein Sequence Data .
16-27
Electronic Edition (link) BibTeX
- Helen L. Johnson, K. Bretonnel Cohen, William A. Baumgartner Jr., Zhiyong Lu, Michael Bada, Todd Kester, Hyunmin Kim, Lawrence Hunter:
Evaluation of Lexical Methods for Detecting Relationships Between Concepts from Multiple Ontologies.
28-39
Electronic Edition (link) BibTeX
- Xu Ling, Jing Jiang, Xin He, Qiaozhu Mei, ChengXiang Zhai, Bruce R. Schatz:
Automatically Generating Gene Summaries from Biomedical Literature.
40-51
Electronic Edition (link) BibTeX
- Zhiyong Lu, K. Bretonnel Cohen, Lawrence Hunter:
Finding GeneRIFs via Gene Ontology Annotations.
52-63
Electronic Edition (link) BibTeX
- Yves A. Lussier, Tara Borlawsky, Daniel Rappaport, Yang Liu, Carol Friedman:
PhenoGO: Assigning Phenotypic Context to Gene Ontology Annotations with Natural Language Processing.
64-75
Electronic Edition (link) BibTeX
- Ana Gabriela Maguitman, Andreas Rechtsteiner, Karin Verspoor, Charlie E. M. Strauss, Luis Mateus Rocha:
Large-Scale Testing of Bibliome Informatics Using Pfam Protein Families.
76-87
Electronic Edition (link) BibTeX
- Emilia Stoica, Marti A. Hearst:
Predicting Gene Functions from Text Using a Cross-Species Approach.
88-99
Electronic Edition (link) BibTeX
- Andreas Vlachos, Caroline Gasperin, Ian Lewin, Ted Briscoe:
Bootstrapping the Recognition and Anaphoric Linking of Named Entities in Drosophila Articles.
100-111
Electronic Edition (link) BibTeX
Semantic Webs for Life Sciences
- Robert Stevens, Olivier Bodenreider, Yves A. Lussier:
Session Introduction.
112-115
Electronic Edition (link) BibTeX
- Sarah Cohen Boulakia, Christine Froidevaux, Emmanuel Pietriga:
Selecting Biological Data Sources and Tools with XPR, a Path Language for RDF.
116-127
Electronic Edition (link) BibTeX
- Benjamin M. Good, Erin M. Tranfield, Poh C. Tan, Marlene Shehata, Gurpreet K. Singhera, John Gosselink, Elena B. Okon, Mark D. Wilkinson:
Fast, Cheap and Out of Control: A Zero Curation Model for Ontology Development.
128-139
Electronic Edition (link) BibTeX
- Toni Kazic:
Putting Semantics into the Semantic Web: How Well Can It Capture Biology?
140-151
Electronic Edition (link) BibTeX
- Tatsuya Kushida, Toshihisa Takagi, Ken-ichiro Fukuda:
Event Ontology: A Pathway-Centric Ontology for Biological Processes.
152-163
Electronic Edition (link) BibTeX
- Sougata Mukherjea, Saurav Sahay:
Discovering Biomedical Relations Utilizing the World-Wide Web.
164-175
Electronic Edition (link) BibTeX
- Eric K. Neumann, Dennis Quan:
Biodash: A Semantic Web Dashboard for Drug Development.
176-187
Electronic Edition (link) BibTeX
- Kevin Y. Yip, Peishen Qi, Martin H. Schultz, David W. Cheung, Kei-Hoi Cheung:
SemBiosphere: A Semantic Web Approach to Recommending Microarray Clustering Services.
188-199
Electronic Edition (link) BibTeX
- Songmao Zhang, Olivier Bodenreider, Christine Golbreich:
Experience in Reasoning with the Foundational Model of Anatomy in OWL DL.
200-211
Electronic Edition (link) BibTeX
Computational Proteomics
- Bobbie-Jo M. Webb-Robertson, William R. Cannon, Joshua N. Adkins, Deborah K. Gracio:
Session Introduction.
212-218
Electronic Edition (link) BibTeX
- Randy J. Arnold, Narmada Jayasankar, Divya Aggarwal, Haixu Tang, Predrag Radivojac:
A Machine Learning Approach to Predicting Peptide Fragmentation Spectra.
219-230
Electronic Edition (link) BibTeX
- Wei Chu, Zoubin Ghahramani, Roland Krause, David L. Wild:
Identifying Protein Complexes in High-Throughput Protein Interaction Screens Using an Infinite Latent Feature Model.
231-242
Electronic Edition (link) BibTeX
- Eva Lange, Clemens Gröpl, Knut Reinert, Oliver Kohlbacher, Andreas Hildebrandt:
High-Accuracy Peak Picking of Proteomics Data Using Wavelet Techniques.
243-254
Electronic Edition (link) BibTeX
- Chunmei Liu, Yinglei Song, Bo Yan, Ying Xu, Liming Cai:
Fast De novo Peptide Sequencing and Spectral Alignment via Tree Decomposition.
255-266
Electronic Edition (link) BibTeX
- C. David Page Jr., Irene M. Ong:
Experimental Design of Time Series Data for Learning from Dynamic Bayesian Networks.
267-278
Electronic Edition (link) BibTeX
- Pallavi N. Pratapa, Edward F. Patz Jr., Alexander J. Hartemink:
Finding Diagnostic Biomarkers in Proteomic Spectra.
279-290
Electronic Edition (link) BibTeX
- Ashish V. Tendulkar, Babatunde Ogunnaike, Pramod P. Wangikar:
Gaussian Mixture Modeling of Helix Subclasses: Structure and Sequence Variations.
291-302
Electronic Edition (link) BibTeX
- Haipeng Wang, Yan Fu, Ruixiang Sun, Simin He, Rong Zeng, Wen Gao:
An SVM Scorer for More Sensitive and Reliable Peptide Identification via Tandem Mass Spectrometry.
303-314
Electronic Edition (link) BibTeX
- Pei Wang, Hua Tang, Heidi Zhang, Jeffrey Whiteaker, Amanda G. Paulovich, Martin McIntosh:
Normalization Regarding Non-Random Missing Values in High-Throughput Mass Spectrometry Data.
315-326
Electronic Edition (link) BibTeX
- Bo Yan, Tong Zhou, Peng Wang, Zhijie Liu, Vincent A. Emanuele II, Victor Olman, Ying Xu:
A Point-Process Model for Rapid Identification of Post-Translational Modifications.
327-338
Electronic Edition (link) BibTeX
- Xu Zhang, Tamer Kahveci:
A New Approach for Alignment of Multiple Proteins.
339-350
Electronic Edition (link) BibTeX
Protein Interactions in Disease
- Maricel G. Kann, Yanay Ofran, Marco Punta, Predrag Radivojac:
Session Introduction.
351-353
Electronic Edition (link) BibTeX
- Sourav Bandyopadhyay, Ryan M. Kelley, Trey Ideker:
Discovering Regulated Networks During HIV-1 Latency and Reactivation.
354-366
Electronic Edition (link) BibTeX
- Jake Yue Chen, Changyu Shen, Andrey Y. Sivachenko:
Mining Alzheimer Disease Relevant Proteins from Integrated Protein Interactome Data.
367-378
Electronic Edition (link) BibTeX
- Sumedha Gunewardena, Zhaolei Zhang:
Accounting for Structural Properties and Nucleotide Co-variations in the Quantitative Prediction of Binding Affinities of Protein-DNA Interactions.
379-390
Electronic Edition (link) BibTeX
- Mark Robinson, Yi Sun, Rene te Boekhorst, Paul Kaye, Rod Adams, Neil Davey, Alistair G. Rust:
Improving Computational Predictions of Cis- Regulatory Binding Sites.
391-402
Electronic Edition (link) BibTeX
- Rohit Singh, Jinbo Xu, Bonnie Berger:
Struct2Net: Integrating Structure into Protein-Protein Interaction Prediction.
403-414
Electronic Edition (link) BibTeX
- Michael Terribilini, Jae-Hyung Lee, Changhui Yan, Robert L. Jernigan, Susan Carpenter:
Identifying Interaction Sites in "Recalcitrant" Proteins: Predicted Protein and RNA Binding Sites in Rev Proteins of HIV-1 and EIAV Agree with Experimental Data.
415-426
Electronic Edition (link) BibTeX
- Sylvie Troncale, Fariza Tahi, David Campard, Jean-Pierre Vannier, Janine Guespin:
Modeling and Simulation with Hybrid Functional Petri Nets of the Role of Interleukin-6 in Human Early Haematopoiesis.
427-438
Electronic Edition (link) BibTeX
- Yuzhen Ye, Zhanwen Li, Adam Godzik:
Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins.
439-450
Electronic Edition (link) BibTeX
Design and Analysis of Genetic Studies After the Hapmap Project
- Francisco M. de la Vega, Andrew G. Clark, Andrew Collins, Kenneth K. Kidd:
Session Introduction.
451-453
Electronic Edition (link) BibTeX
- Natalie Castellana, Kedar Dhamdhere, Srinath Sridhar, Russell Schwartz:
Relaxing Haplotype Block Models for Association Testing.
454-466
Electronic Edition (link) BibTeX
- Lina Chen, H. Eduardo Velasco Mondragón, Eduardo Lazcano-Ponce, Andrew Collins, Yin Yao Shugart:
Effect of the Peroxisome Proliferators-Activated Receptor (PPAR) Gamma 3 Gene on BMI in 1, 210 School Students from Morelos, Mexico.
467-477
Electronic Edition (link) BibTeX
- Paul I. W. De Bakker, Robert R. Graham, David Altshuler, Brian E. Henderson, Christopher A. Haiman:
Transferability of Tag SNPs to Capture Common Genetic Variation in DNA Repair Genes Across Multiple Populations.
478-486
Electronic Edition (link) BibTeX
- Francisco M. de la Vega, Hadar I. Isaac, Charles R. Scafe:
A Tool for Selecting SNPs for Association Studies Based on Observed Linkage Disequilibrium Patterns.
487-498
Electronic Edition (link) BibTeX
- Scott M. Dudek, Alison A. Motsinger, Digna R. Velez, Scott M. Williams, Marylyn D. Ritchie:
Data Simulation Software for Whole-Genome Association and Other Studies in Human Genetics.
499-510
Electronic Edition (link) BibTeX
- Shyam Gopalakrishnan, Zhaohui S. Qin:
TagSNP Selection Based on Pairwise LD Criteria and Power Analysis in Association Studies.
511-522
Electronic Edition (link) BibTeX
- Peter Kraft:
Efficient Two-Stage Genome-Wide Association Designs Based on False Positive Report Probabilities.
523-534
Electronic Edition (link) BibTeX
- Reedik Magi, Lauris Kaplinski, Maido Remm:
The Whole Genome TagSNP Selection and Transferability Among HapMap Populations.
535-543
Electronic Edition (link) BibTeX
Computational Approaches for Pharmacogenomics
- Michelle W. Carrillo, Russell A. Wilke, Marylyn D. Ritchie:
Session Introduction.
544-546
Electronic Edition (link) BibTeX
- Karsten M. Borgwardt, S. V. N. Vishwanathan, Hans-Peter Kriegel:
Class Prediction from Time Series Gene Expression Profiles Using Dynamical Systems Kernels.
547-558
Electronic Edition (link) BibTeX
- Seiya Imoto, Yoshinori Tamada, Hiromitsu Araki, Kaori Yasuda, Cristin G. Print, Stephen D. Charnock-Jones, Deborah Sanders, Christopher J. Savoie, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano:
Computational Strategy for Discovering Druggable Gene Networks from Genome-Wide RNA Expression Profiles.
559-571
Electronic Edition (link) BibTeX
- Min Lin, Rongling Wu, Julie A. Johnson:
A Bivariate Functional Mapping Model for Identifying Haplotypes that Control Drug Response for Systolic and Diastolic Blood Pressures.
572-583
Electronic Edition (link) BibTeX
- Alison A. Motsinger, Brian S. Donahue, Nancy J. Brown, Dan M. Roden, Marylyn D. Ritchie:
Risk Factor Interactions and Genetic Effects Associated with Post-Operative Atrial Fibrillation.
584-595
Electronic Edition (link) BibTeX
- Lothar Richter, Ulrich Rückert, Stefan Kramer:
Learning a Predictive Model for Growth Inhibition from the NCI DTP Human Tumor Cell Line Screening Data: Does Gene Expression Make a Difference?
596-607
Electronic Edition (link) BibTeX
Copyright © Sat May 16 23:35:20 2009
by Michael Ley (ley@uni-trier.de)
