2008 |
27 | EE | Hongwei Wu,
Fenglou Mao,
Victor Olman,
Ying Xu:
On application of directons to functional classification of genes in prokaryotes.
Computational Biology and Chemistry 32(3): 176-184 (2008) |
26 | EE | Qi Liu,
Victor Olman,
Huiqing Liu,
Xiuzi Ye,
Shilun Qiu,
Ying Xu:
RNACluster: An integrated tool for RNA secondary structure comparison and clustering.
Journal of Computational Chemistry 29(9): 1517-1526 (2008) |
2007 |
25 | EE | Hongwei Wu,
Fenglou Mao,
Victor Olman,
Ying Xu:
An Algorithm for Hierarchical Classification of Genes of Prokaryotic Genomes.
ISBRA 2007: 551-563 |
24 | EE | Guojun Li,
Jizhu Lu,
Victor Olman,
Ying Xu:
Prediction of cis-Regulatory Elements: from High-Information Content Analysis to Motif Identification.
J. Bioinformatics and Computational Biology 5(4): 817-838 (2007) |
2006 |
23 | EE | Robin Kramer,
Victor Olman,
Ying Xu,
Dong Xu:
DigitalTree: A Tool for Displaying Biological Data in Tree Structure.
International Conference on Computational Science (2) 2006: 855-862 |
22 | EE | Bo Yan,
Tong Zhou,
Peng Wang,
Zhijie Liu,
Vincent A. Emanuele II,
Victor Olman,
Ying Xu:
A Point-Process Model for Rapid Identification of Post-Translational Modifications.
Pacific Symposium on Biocomputing 2006: 327-338 |
21 | EE | Victor Olman,
Chindo Hicks,
Peng Wang,
Ying Xu:
Gene Expression Data Analysis in Subtypes of Ovarian Cancer Using Covariance Analysis.
J. Bioinformatics and Computational Biology 4(5): 999-1014 (2006) |
2005 |
20 | EE | Hongwei Wu,
Fenglou Mao,
Victor Olman,
Ying Xu:
Accurate Prediction of Orthologous Gene Groups in Microbes.
CSB 2005: 73-79 |
19 | EE | Guojun Li,
Jizhu Lu,
Victor Olman,
Ying Xu:
PROMOCO: a New Program for Prediction of cis Regulatory Elements: From High-Information Content Analysis to Clique Identification.
CSB Workshops 2005: 35-36 |
18 | EE | PhuongAn Dam,
Victor Olman,
Ying Xu:
Improving Operon Prediction in E. coli.
CSB Workshops 2005: 69-70 |
17 | EE | Bo Yan,
Chongle Pan,
Victor Olman,
Robert L. Hettich,
Ying Xu:
A graph-theoretic approach for the separation of b and y ions in tandem mass spectra.
Bioinformatics 21(5): 563-574 (2005) |
16 | EE | Bo Yan,
Youxing Qu,
Fenglou Mao,
Victor Olman,
Ying Xu:
PRIME: A Mass Spectrum Data Mining Tool for De Nova Sequencing and PTMs Identification.
J. Comput. Sci. Technol. 20(4): 483-490 (2005) |
2004 |
15 | EE | Zhengchang Su,
PhuongAn Dam,
Victor Olman,
Ying Xu:
Computational Inference of Transcription Regulation and Response Networks in Synechococcus sp. WH8102.
BIBE 2004: 5-8 |
14 | EE | Bo Yan,
Chongle Pan,
Victor Olman,
Robert L. Hettich,
Ying Xu:
Separation of Ion Types in Tandem Mass Spectrometry Data Interpretation - A Graph-Theoretic Approach.
CSB 2004: 236-244 |
13 | EE | Victor Olman,
Hanchuan Peng,
Zhengchang Su,
Ying Xu:
Mapping of Microbial Pathways through Constrained Mapping of Orthologous Genes.
CSB 2004: 363-370 |
12 | EE | PhuongAn Dam,
Zhengchang Su,
Victor Olman,
Ying Xu:
In Silico Construction of the Carbon Fixation Pathway in Synechococcus sp. WH8102.
CSB 2004: 614-615 |
11 | EE | Zhengchang Su,
PhuongAn Dam,
X. Chen,
Victor Olman,
Tao Jiang,
Ying Xu:
Computational Construction of Nitrogen Assimilation Pathway in Cyanobacteria Synechococcus sp. WH8102.
CSB 2004: 640-641 |
10 | EE | Fenglou Mao,
Zhengchang Su,
Victor Olman,
David Chuang,
Ying Xu:
Pathway Mapping with Operon Information: An Integer-Programming Method.
CSB 2004: 642-643 |
9 | EE | Victor Olman,
Jizhu Lu,
PhuongAn Dam,
Zhengchang Su,
Ying Xu:
CUBIC: Search for Binding Sites.
CSB 2004: 666-667 |
8 | EE | Youxing Qu,
Jun-tao Guo,
Victor Olman,
Ying Xu:
Protein Fold Recognition Through Application of Residual Dipolar Coupling Data.
Pacific Symposium on Biocomputing 2004: 459-470 |
2003 |
7 | EE | Jane Razumovskaya,
Victor Olman,
Dong Xu,
Edward C. Uberbacher,
Nathan Verberkmoes,
Ying Xu:
A Computational Method for Assessing Peptide-Identification Reliability in Tandem Mass Spectrometry Analysis with SEQUEST.
CSB 2003: 421-423 |
6 | EE | Victor Olman,
Dong Xu,
Ying Xu:
CUBIC: Identification of Regulatory Binding Sites Through Data Clustering.
CSB 2003: 448-449 |
5 | EE | Zhengchang Su,
PhuongAn Dam,
X. Chen,
Victor Olman,
Tao Jiang,
B. Palenik,
Ying Xu:
Computational Inference of Regulatory Pathways in Microbes.
CSB 2003: 631-633 |
4 | EE | Victor Olman,
Dong Xu,
Ying Xu:
Identification of Regulatory Binding Sites Using Minimum Spanning Trees.
Pacific Symposium on Biocomputing 2003: 327-338 |
3 | EE | Victor Olman,
Dong Xu,
Ying Xu:
Cubic: Identification of Regulatory Binding Sites through Data Clustering.
J. Bioinformatics and Computational Biology 1(1): 21-40 (2003) |
2002 |
2 | | Ying Xu,
Victor Olman,
Dong Xu:
Clustering gene expression data using a graph-theoretic approach: an application of minimum spanning trees.
Bioinformatics 18(4): 536-545 (2002) |
1998 |
1 | EE | Ying Xu,
Victor Olman,
Edward C. Uberbacher:
A segmentation algorithm for noisy images: Design and evaluation.
Pattern Recognition Letters 19(13): 1213-1224 (1998) |