| 2006 |
| 8 | EE | Yuzhen Ye,
Zhanwen Li,
Adam Godzik:
Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins.
Pacific Symposium on Biocomputing 2006: 439-450 |
| 7 | EE | Zhanwen Li,
Yuzhen Ye,
Adam Godzik:
Flexible Structural Neighborhood - a database of protein structural similarities and alignments.
Nucleic Acids Research 34(Database-Issue): 277-280 (2006) |
| 2005 |
| 6 | EE | Yuzhen Ye,
Andrei Osterman,
Ross A. Overbeek,
Adam Godzik:
Automatic detection of subsystem/pathway variants in genome analysis.
ISMB (Supplement of Bioinformatics) 2005: 478-486 |
| 5 | EE | Yuzhen Ye,
Adam Godzik:
Multiple flexible structure alignment using partial order graphs.
Bioinformatics 21(10): 2362-2369 (2005) |
| 2004 |
| 4 | EE | Dariusz Plewczynski,
Leszek Rychlewski,
Yuzhen Ye,
Lukasz Jaroszewski,
Adam Godzik:
Integrated web service for improving alignment quality based on segments comparison.
BMC Bioinformatics 5: 98 (2004) |
| 3 | | Yuzhen Ye,
Adam Godzik:
FATCAT: a web server for flexible structure comparison and structure similarity searching.
Nucleic Acids Research 32(Web-Server-Issue): 582-585 (2004) |
| 2003 |
| 2 | | Yuzhen Ye,
Adam Godzik:
Flexible structure alignment by chaining aligned fragment pairs allowing twists.
ECCB 2003: 246-255 |
| 1 | | Yuzhen Ye,
Lukasz Jaroszewski,
Weizhong Li,
Adam Godzik:
A segment alignment approach to protein comparison.
Bioinformatics 19(6): 742-749 (2003) |