Adam Godzik

2007
27		Lukasz Slabinski, Adam Godzik, Leszek Rychlewski: TOM - Task and Object Management for Grid Clusters. GCA 2007: 199-205
26	EE	Iddo Friedberg, Tim Harder, Rachel Kolodny, Einat Sitbon, Zhanwen Li, Adam Godzik: Using an alignment of fragment strings for comparing protein structures. Bioinformatics 23(2): 219-224 (2007)
25	EE	Lukasz Slabinski, Lukasz Jaroszewski, Leszek Rychlewski, Ian A. Wilson, Scott A. Lesley, Adam Godzik: XtalPred: a web server for prediction of protein crystallizability. Bioinformatics 23(24): 3403-3405 (2007)
24	EE	Yoshinobu Igarashi, Alexey M. Eroshkin, Svetlana Gramatikova, Kosi Gramatikoff, Ying Zhang, Jeffrey W. Smith, Andrei Osterman, Adam Godzik: CutDB: a proteolytic event database. Nucleic Acids Research 35(Database-Issue): 546-549 (2007)
2006
23	EE	Yuzhen Ye, Zhanwen Li, Adam Godzik: Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins. Pacific Symposium on Biocomputing 2006: 439-450
22	EE	Weizhong Li, Adam Godzik: Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 22(13): 1658-1659 (2006)
21	EE	Weizhong Li, Adam Godzik: VISSA: a program to visualize structural features from structure sequence alignment. Bioinformatics 22(7): 887-888 (2006)
20	EE	Zhanwen Li, Yuzhen Ye, Adam Godzik: Flexible Structural Neighborhood - a database of protein structural similarities and alignments. Nucleic Acids Research 34(Database-Issue): 277-280 (2006)
19	EE	Iddo Friedberg, Tim Harder, Adam Godzik: JAFA: a protein function annotation meta-server. Nucleic Acids Research 34(Web-Server-Issue): 379-381 (2006)
2005
18	EE	Yuzhen Ye, Andrei Osterman, Ross A. Overbeek, Adam Godzik: Automatic detection of subsystem/pathway variants in genome analysis. ISMB (Supplement of Bioinformatics) 2005: 478-486
17	EE	Yuzhen Ye, Adam Godzik: Multiple flexible structure alignment using partial order graphs. Bioinformatics 21(10): 2362-2369 (2005)
16	EE	Iddo Friedberg, Adam Godzik: Fragnostic: walking through protein structure space. Nucleic Acids Research 33(Web-Server-Issue): 249-251 (2005)
15	EE	Lukasz Jaroszewski, Leszek Rychlewski, Zhanwen Li, Weizhong Li, Adam Godzik: FFAS03: a server for profile-profile sequence alignments. Nucleic Acids Research 33(Web-Server-Issue): 284-288 (2005)
2004
14	EE	Philip E. Bourne, C. K. J. Allerston, Werner G. Krebs, Wilfred W. Li, Ilya N. Shindyalov, Adam Godzik, Iddo Friedberg, Tong Liu, David L. Wild, Seungwoo Hwang, Zoubin Ghahramani, Li Chen, John D. Westbrook: The Status of Structural Genomics Defined Through the Analysis of Current Targets and Structures. Pacific Symposium on Biocomputing 2004: 375-386
13	EE	Dariusz Plewczynski, Leszek Rychlewski, Yuzhen Ye, Lukasz Jaroszewski, Adam Godzik: Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics 5: 98 (2004)
12		Yuzhen Ye, Adam Godzik: FATCAT: a web server for flexible structure comparison and structure similarity searching. Nucleic Acids Research 32(Web-Server-Issue): 582-585 (2004)
2003
11		Yuzhen Ye, Adam Godzik: Flexible structure alignment by chaining aligned fragment pairs allowing twists. ECCB 2003: 246-255
10	EE	Marcin Grynberg, Lukasz Jaroszewski, Adam Godzik: Domain analysis of the tubulin cofactor system: a model for tubulin folding and dimerization. BMC Bioinformatics 4: 46 (2003)
9		Yuzhen Ye, Lukasz Jaroszewski, Weizhong Li, Adam Godzik: A segment alignment approach to protein comparison. Bioinformatics 19(6): 742-749 (2003)
2002
8	EE	Baohong Zhang, Adam Godzik: The Meaning and Limitations of Protein Structure Alignments. 3DPVT 2002: 729-736
7		Weizhong Li, Lukasz Jaroszewski, Adam Godzik: Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics 18(1): 77-82 (2002)
2001
6		Weizhong Li, Lukasz Jaroszewski, Adam Godzik: Clustering of highly homologous sequences to reduce the size of large protein databases. Bioinformatics 17(3): 282-283 (2001)
2000
5		Lukasz Jaroszewski, Adam Godzik: Search for a New Description of Protein Topology and Local Structure. ISMB 2000: 211-217
4		Weizhong Li, Frederic Pio, Krzysztof Pawlowski, Adam Godzik: Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics 16(12): 1105-1110 (2000)
3	EE	Krzysztof Pawlowski, Leszek Rychlewski, John C. Reed, Adam Godzik: From Fold to Function Predictions: An Apoptosis Regulator Protein BID. Computers & Chemistry 24(3-4): 511-517 (2000)
1994
2		Adam Godzik, Jeffrey Skolnick: Flexible algorithm for direct multiple alignment of protein structures and sequences. Computer Applications in the Biosciences 10(6): 587-596 (1994)
1993
1		Adam Godzik, Andrzej Kolinski, Jeffrey Skolnick: De novo and inverse folding predictions of protein structure and dynamics. Journal of Computer-Aided Molecular Design 7(4): 397-438 (1993)

Coauthor Index

1	C. K. J. Allerston	[14]
2	Philip E. Bourne	[14]
3	Li Chen	[14]
4	Alexey M. Eroshkin	[24]
5	Iddo Friedberg	[14] [16] [19] [26]
6	Zoubin Ghahramani	[14]
7	Kosi Gramatikoff	[24]
8	Svetlana Gramatikova	[24]
9	Marcin Grynberg	[10]
10	Tim Harder	[19] [26]
11	Seungwoo Hwang	[14]
12	Yoshinobu Igarashi	[24]
13	Lukasz Jaroszewski	[5] [6] [7] [9] [10] [13] [15] [25]
14	Andrzej Kolinski	[1]
15	Rachel Kolodny	[26]
16	Werner G. Krebs	[14]
17	Scott A. Lesley	[25]
18	Weizhong Li	[4] [6] [7] [9] [15] [21] [22]
19	Wilfred W. Li	[14]
20	Zhanwen Li	[15] [20] [23] [26]
21	Tong Liu	[14]
22	Andrei Osterman	[18] [24]
23	Ross A. Overbeek	[18]
24	Krzysztof Pawlowski	[3] [4]
25	Frederic Pio	[4]
26	Dariusz Plewczynski	[13]
27	John C. Reed	[3]
28	Leszek Rychlewski	[3] [13] [15] [25] [27]
29	Ilya N. Shindyalov	[14]
30	Einat Sitbon	[26]
31	Jeffrey Skolnick	[1] [2]
32	Lukasz Slabinski	[25] [27]
33	Jeffrey W. Smith	[24]
34	John D. Westbrook	[14]
35	David L. Wild	[14]
36	Ian A. Wilson	[25]
37	Yuzhen Ye	[9] [11] [12] [13] [17] [18] [20] [23]
38	Baohong Zhang	[8]
39	Ying Zhang	[24]

Colors in the list of coauthors