6. PSB 2001: Hawaii, USA
Proceedings of the 6th Pacific Symposium on Biocomputing (PSB 2001),
Hawaii, USA, January 3-7, 2001
Human Genome Variation:
Linking Genotypes to Clinical Phenotypes
- Francisco M. de la Vega, Martin Kreitman, Isaac S. Kohane:
Human Genome Variation: Linking Genotypes to Clinical Phenotypes - Session Introduction.
3-5
Electronic Edition (link) BibTeX
- Atul J. Butte, J. Ye, G. Niederfellner, K. Rett, H. U. Häring, M. F. White, Isaac S. Kohane:
Determining Significant Fold Differences in Gene Expression Analysis.
6-17
Electronic Edition (link) BibTeX
- Derek Gordon, Jürg Ott:
Assessment and Management of Single Nucleotide Polymorphism Genotype Errors in Genetic Association.
18-29
Electronic Edition (link) BibTeX
- Ju-Han Kim, Lucila Ohno-Machado, Isaac S. Kohane:
Unsupervised Learning from Complex Data: The Matrix Incision Tree Algorithm.
30-41
Electronic Edition (link) BibTeX
- Gregory T. Klus, Andrew Song, Ari Schick, Mattias Wahde, Zoltan Szallasi:
Mutual Information Analysis as a Tool to Assess the Role of Aneuploidy in the Generation of Cancer-Associated Differential Gene Expression Patterns.
42-51
Electronic Edition (link) BibTeX
- Peter J. Park, Marcello Pagano, Marco Bonetti:
A Nonparametric Scoring Algorithm for Identifying Informative Genes from Microarray Data.
52-63
Electronic Edition (link) BibTeX
Disorder and Flexibility in Protein Structure and Function
- Clay Bracken, Malin M. Young, A. Keith Dunker:
Disorder and Flexibility in Protein Structure and Function - Session Introduction.
64-66
Electronic Edition (link) BibTeX
- Andrei T. Alexandrescu:
An NMR-Based Quenched Hydrogen Exchange Investigation of Model Amyloid Fibrils Formed by Cold Shock Protein A.
67-78
Electronic Edition (link) BibTeX
- J. J. Prompers, S. F. Lienin, R. Brüschweiler:
Collective Reorientational Motion and Nuclear Spin Relaxation in Proteins.
79-88
Electronic Edition (link) BibTeX
- R. M. Williams, Zoran Obradovic, V. Mathura, W. Braun, E. C. Garner, J. Young, S. Takayama, Celeste J. Brown, A. Keith Dunker:
The Protein Non-Folding Problem: Amino Acid Determinants of Intrinsic Order and Disorder.
89-100
Electronic Edition (link) BibTeX
DNA Structure,
Protein-DNA Interactions,
and DNA-Protein Expression
- P. F. Baldi, Richard H. Lathrop:
DNA Structure, Protein-DNA Interactions, and DNA-Protein Expression - Session Introduction.
101-102
Electronic Edition (link) BibTeX
- Craig J. Benham:
Stress-Induced DNA Duplex Destabilization in Transcriptional Initiation.
103-114
Electronic Edition (link) BibTeX
- Panayiotis V. Benos, Alan S. Lapedes, D. S. Fields, Gary D. Stormo:
SAMIE: Statistical Algorithm for Modeling Interaction Energies.
115-126
Electronic Edition (link) BibTeX
- X. Liu, Douglas L. Brutlag, Jun S. Liu:
BioProspector: Discovering Conserved DNA Motifs in Upstream Regulatory Regions of Co-Expressed Genes.
127-138
Electronic Edition (link) BibTeX
- Yael Mandel-Gutfreund, A. Baron, Hanah Margalit:
A Structure-Based Approach for Prediction of Protein Binding Sites in Gene-Upstream Regions.
139-150
Electronic Edition (link) BibTeX
- Paul Pavlidis, Terrence S. Furey, M. Liberto, David Haussler, William Noble Grundy:
Promoter Region-Based Classification of Genes.
151-164
Electronic Edition (link) BibTeX
Structures,
Phylogenies,
and Genomes:
The Integrated Study of Protein Evolution
- Richard A. Goldstein, David D. Pollock, Jeffrey L. Thorne:
Structures, Phylogenies, and Genomes: The Integrated Study of Protein Evolution - Session Introduction.
164-166
Electronic Edition (link) BibTeX
- John S. Conery, Michael Lynch:
Nucleotide Substitutions and the Evolution of Duplicate Genes.
167-178
Electronic Edition (link) BibTeX
- Jotun Hein:
An Algorithm for Statistical Alignment of Sequences Related by a Binary Tree.
179-190
Electronic Edition (link) BibTeX
- Jeffrey M. Koshi, Richard A. Goldstein:
Analyzing Rate Heterogeneity During Protein Evolution.
191-202
Electronic Edition (link) BibTeX
- Andrey Rzhetsky, Pavel Morozov:
Markov Chain Monte Carlo Computation of Confidence Intervals for Substitution-Rate Variation in Proteins.
203-214
Electronic Edition (link) BibTeX
- Simon Tavaré, Dean C. Adams, Olivier Fedrigo, Gavin J. P. Naylor:
A Model for Phylogenetic Inference Using Structural and Chemical Covariates.
215-225
Electronic Edition (link) BibTeX
- Ziheng Yang:
Maximum Likelihood Analysis of Adaptive Evolution in HIV-1 Gp120 env Gene.
226-237
Electronic Edition (link) BibTeX
High Performance Computing for Computational Biology
- Thomas E. Ferrin, Bruce A. Foster, Richard Hughey:
High Performance Computing for Computational Biology - Session Introduction.
238-239
Electronic Edition (link) BibTeX
- D. Rey Banatao, Conrad C. Huang, Patricia C. Babbitt, Russ B. Altman, Teri E. Klein:
ViewFeature: Integrated Feature Analysis and Visualization.
240-250
Electronic Edition (link) BibTeX
- Alexander Dimitrov, John P. Miller:
Analyzing Sensory Systems with the Information Distortion Function.
251-262
Electronic Edition (link) BibTeX
- Leslie Grate, Mark Diekhans, David M. Dahle, Richard Hughey:
Sequence Analysis With the Kestrel SIMD Parallel Processor.
263-274
Electronic Edition (link) BibTeX
- Chittibabu Guda, Eric D. Scheeff, Philip E. Bourne, Ilya N. Shindyalov:
A New Algorithm for the Alignment of Multiple Protein Structures Using Monte Carlo Optimization.
275-286
Electronic Edition (link) BibTeX
- Tai Hsu, Paul Cull:
Gene Verification and Discovery by Walking Tree Method.
287-298
Electronic Edition (link) BibTeX
- Torgeir R. Hvidsten, Henryk Jan Komorowski, Arne K. Sandvik, Astrid Lægreid:
Predicting Gene Function from Gene Expressions and Ontologies.
299-310
Electronic Edition (link) BibTeX
- W. S. Martins, Juan del Cuvillo, F. J. Useche, Kevin B. Theobald, Guang R. Gao:
A Multithreaded Parallel Implementation of a Dynamic Programming Algorithm for Sequence Comparison.
311-322
Electronic Edition (link) BibTeX
- Eric Rice, Richard Hughey:
Molecular Fingerprinting on the SIMD Parallel Processor Kestrel.
323-334
Electronic Edition (link) BibTeX
- R. Sásik, Terence Hwa, N. Iranfar, W. F. Loomis:
Percolation Clustering: A Novel Algorithm Applied to the Clustering of Gene Expression Patterns in Dictyostelium Development.
335-347
Electronic Edition (link) BibTeX
- Rimli Sengupta, Martin Tompa:
Quality Control in Manufacturing Oligo Arrays: A Combinatorial Design Approach.
348-359
Electronic Edition (link) BibTeX
- Allison Waugh, Glenn A. Williams, Liping Wei, Russ B. Altman:
Using Metacomputing Tools to Facilitate Large Scale Analyses of Biological Databases.
360-371
Electronic Edition (link) BibTeX
Natural Language Processing for Biology
- Jun-ichi Tsujii, Limsoon Wong:
Natural Language Processing for Biology - Session Introduction.
372-373
Electronic Edition (link) BibTeX
- Jeffrey T. Chang, Soumya Raychaudhuri, Russ B. Altman:
Including Biological Literature Improves Homology Search.
374-383
Electronic Edition (link) BibTeX
- Ioannis Iliopoulos, Anton J. Enright, Christos A. Ouzounis:
TEXTQUEST: Document Clustering of MEDLINE Abstracts For Concept Discovery In Molecular Biology.
384-395
Electronic Edition (link) BibTeX
- Jong C. Park, Hyun Sook Kim, Jung-jae Kim:
Bidirectional Incremental Parsing for Automatic Pathway Identification with Combinatory Categorial Grammar.
396-407
Electronic Edition (link) BibTeX
- Akane Yakushiji, Yuka Tateisi, Yusuke Miyao, Jun-ichi Tsujii:
Event Extraction from Biomedical Papers Using a Full Parser.
408-419
Electronic Edition (link) BibTeX
Genome,
Pathway and Interaction Bioinformatics
- Peter D. Karp, Eric P. Neumann, Pedro Romero:
Genome, Pathway and Interaction Bioinformatics - Session Introduction.
420-421
Electronic Edition (link) BibTeX
- Alexander J. Hartemink, David K. Gifford, Tommi Jaakkola, Richard A. Young:
Using Graphical Models and Genomic Expression Data to Statistically Validate Models of Genetic Regulatory Networks.
422-433
Electronic Edition (link) BibTeX
- John R. Koza, William Mydlowec, Guido Lanza, Jessen Yu, Martin A. Keane:
Reverse Engineering of Metabolic Pathways from Observed Data Using Genetic Programming.
434-445
Electronic Edition (link) BibTeX
- Yukihiro Maki, Daisuke Tominaga, Masahiro Okamoto, Shoji Watanabe, Yukihiro Eguchi:
Development of a System for the Inference of Large Scale Genetic Networks.
446-458
Electronic Edition (link) BibTeX
- Aviv Regev, William Silverman, Ehud Y. Shapiro:
Representation and Simulation of Biochemical Processes Using the pi-Calculus Process Algebra.
459-470
Electronic Edition (link) BibTeX
- Pedro Romero, Peter D. Karp:
Nutrition-Related Analysis of Pathway/Genome Databases.
470-482
Electronic Edition (link) BibTeX
- Matthew Stephens, Mathew J. Palakal, Snehasis Mukhopadhyay, Rajeev R. Raje, Javed Mostafa:
Detecting Gene Relations from MEDLINE Abstracts.
483-496
Electronic Edition (link) BibTeX
- Christine L. Tsien, T. A. Libermann, X. Gu, Isaac S. Kohane:
On Reporting Fold Differences.
496-507
Electronic Edition (link) BibTeX
- Lodewyk F. A. Wessels, Eugene P. van Someren, Marcel J. T. Reinders:
A Comparison of Genetic Network Models.
508-519
Electronic Edition (link) BibTeX
- Limsoon Wong:
PIES, A Protein Interaction Extraction System.
520-531
Electronic Edition (link) BibTeX
- Lingchong You, John Yin:
Simulating the Growth of Viruses.
532-543
Electronic Edition (link) BibTeX
Phylogenetics in the Post-Genomic Era
- Jennifer E. Steinbachs, Paul E. Kearney:
Phylogenetics in the Post-Genomic Era - Session Introduction.
544-546
Electronic Edition (link) BibTeX
- Olaf R. P. Bininda-Emonds, S. G. Brady, J. Kim, Michael J. Sanderson:
Scaling of Accuracy in Extremely Large Phylogenetic Trees.
547-558
Electronic Edition (link) BibTeX
- Patricia A. Evans, Harold T. Wareham:
Exact Algorithms for Computing Pairwise Alignments and 3-Medians From Structure-Annotated Sequences (Extended Abstract).
559-570
Electronic Edition (link) BibTeX
- Junhyong Kim, Benjamin A. Salisbury:
A Tree Obscured By Vines: Horizontal Gene Transfer and the Median Tree Method of Estimating Species Phylogeny.
571-582
Electronic Edition (link) BibTeX
- Bernard M. E. Moret, Stacia K. Wyman, David A. Bader, Tandy Warnow, Mi Yan:
A New Implmentation and Detailed Study of Breakpoint Analysis.
583-594
Electronic Edition (link) BibTeX
- Fengrong Ren, S. Ogishima, Hiroshi Tanaka:
A New Algorithm for Analysis of Within-Host HIV-1 Evolution.
595-605
Electronic Edition (link) BibTeX
- Jennifer E. Steinbachs, Nikolaos V. Schizas, J. W. O. Ballard:
Efficiencies of Genes and Accuracy of Tree-Building Methods in Recovering a Known Drosophila Genealogy.
606-617
Electronic Edition (link) BibTeX
Bioethics,
Fiction Science,
and the Future of Mankind
Copyright © Sat May 16 23:35:19 2009
by Michael Ley (ley@uni-trier.de)
