Mark Diekhans

2008
14	EE	Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler: Using native and syntenically mapped cDNA alignments to improve de novo gene finding. Bioinformatics 24(5): 637-644 (2008)
13	EE	Donna Karolchik, Robert M. Kuhn, Robert Baertsch, Galt P. Barber, Hiram Clawson, Mark Diekhans, Belinda Giardine, Rachel A. Harte, Angela S. Hinrichs, Fan Hsu, K. M. Kober, Webb Miller, J. S. Pedersen, Andy Pohl, Brian J. Raney, Brooke L. Rhead, Kate R. Rosenbloom, Kayla E. Smith, Mario Stanke, Archana Thakkapallayil, Heather Trumbower, T. Wang, Ann S. Zweig, David Haussler, W. James Kent: The UCSC Genome Browser Database: 2008 update. Nucleic Acids Research 36(Database-Issue): 773-779 (2008)
2007
12	EE	Robert M. Kuhn, Donna Karolchik, Ann S. Zweig, Heather Trumbower, Daryl J. Thomas, Archana Thakkapallayil, Charles W. Sugnet, Mario Stanke, Kayla E. Smith, Adam C. Siepel, Kate R. Rosenbloom, Brooke L. Rhead, Brian J. Raney, Andy Pohl, J. S. Pedersen, Fan Hsu, Angela S. Hinrichs, Rachel A. Harte, Mark Diekhans, Hiram Clawson, Gill Bejerano, Galt P. Barber, Robert Baertsch, David Haussler, W. James Kent: The UCSC genome browser database: update 2007. Nucleic Acids Research 35(Database-Issue): 668-673 (2007)
2006
11	EE	Fan Hsu, W. James Kent, Hiram Clawson, Robert M. Kuhn, Mark Diekhans, David Haussler: The UCSC Known Genes. Bioinformatics 22(9): 1036-1046 (2006)
10	EE	Angela S. Hinrichs, Donna Karolchik, Robert Baertsch, Galt P. Barber, Gill Bejerano, Hiram Clawson, Mark Diekhans, Terrence S. Furey, Rachel A. Harte, Fan Hsu, Jennifer Hillman-Jackson, Robert M. Kuhn, J. S. Pedersen, Andy Pohl, Brian J. Raney, Kate R. Rosenbloom, Adam C. Siepel, Kayla E. Smith, Charles W. Sugnet, A. Sultan-Qurraie, Daryl J. Thomas, Heather Trumbower, R. J. Weber, M. Weirauch, Ann S. Zweig, David Haussler, W. James Kent: The UCSC Genome Browser Database: update 2006. Nucleic Acids Research 34(Database-Issue): 590-598 (2006)
2005
9	EE	Rachel Karchin, Mark Diekhans, Libusha Kelly, Daryl J. Thomas, Ursula Pieper, Narayanan Eswar, David Haussler, Andrej Sali: LS-SNP: large-scale annotation of coding non-synonymous SNPs based on multiple information sources. Bioinformatics 21(12): 2814-2820 (2005)
8	EE	Andrea Di Blas, David M. Dahle, Mark Diekhans, Leslie Grate, Jeffrey D. Hirschberg, Kevin Karplus, Hansjörg Keller, Mark Kendrick, Francisco J. Mesa-Martinez, David Pease, Eric Rice, Angela Schultz, Don Speck, Richard Hughey: The UCSC Kestrel Parallel Processor. IEEE Trans. Parallel Distrib. Syst. 16(1): 80-92 (2005)
7	EE	Fan Hsu, Tom H. Pringle, Robert M. Kuhn, Donna Karolchik, Mark Diekhans, David Haussler, W. James Kent: The UCSC Proteome Browser. Nucleic Acids Research 33(Database-Issue): 454-458 (2005)
2004
6	EE	Krishna M. Roskin, Mark Diekhans, David Haussler: Score Functions for Determining Regional Conservation in Two-Species Local Alignments. Journal of Computational Biology 11(2/3): 395-411 (2004)
2003
5	EE	Krishna M. Roskin, Mark Diekhans, David Haussler: Scoring two-species local alignments to try to statistically separate neutrally evolving from selected DNA segments. RECOMB 2003: 257-266
4		Donna Karolchik, Robert Baertsch, Mark Diekhans, Terrence S. Furey, Angela S. Hinrichs, Y. T. Lu, Krishna M. Roskin, M. Schwartz, Charles W. Sugnet, Daryl J. Thomas, R. J. Weber, David Haussler, W. James Kent: The UCSC Genome Browser Database. Nucleic Acids Research 31(1): 51-54 (2003)
2001
3	EE	Leslie Grate, Mark Diekhans, David M. Dahle, Richard Hughey: Sequence Analysis With the Kestrel SIMD Parallel Processor. Pacific Symposium on Biocomputing 2001: 263-274
2000
2		Tommi Jaakkola, Mark Diekhans, David Haussler: A Discriminative Framework for Detecting Remote Protein Homologies. Journal of Computational Biology 7(1-2): 95-114 (2000)
1999
1		Tommi Jaakkola, Mark Diekhans, David Haussler: Using the Fisher Kernel Method to Detect Remote Protein Homologies. ISMB 1999: 149-158

Coauthor Index

1	Robert Baertsch	[4] [10] [12] [13] [14]
2	Galt P. Barber	[10] [12] [13]
3	Gill Bejerano	[10] [12]
4	Andrea Di Blas	[8]
5	Hiram Clawson	[10] [11] [12] [13]
6	David M. Dahle	[3] [8]
7	Narayanan Eswar	[9]
8	Terrence S. Furey	[4] [10]
9	Belinda Giardine	[13]
10	Leslie Grate	[3] [8]
11	Rachel A. Harte	[10] [12] [13]
12	David Haussler	[1] [2] [4] [5] [6] [7] [9] [10] [11] [12] [13] [14]
13	Jennifer Hillman-Jackson	[10]
14	Angela S. Hinrichs	[4] [10] [12] [13]
15	Jeffrey D. Hirschberg	[8]
16	Fan Hsu	[7] [10] [11] [12] [13]
17	Richard Hughey	[3] [8]
18	Tommi Jaakkola	[1] [2]
19	Rachel Karchin	[9]
20	Donna Karolchik	[4] [7] [10] [12] [13]
21	Kevin Karplus	[8]
22	Hansjörg Keller	[8]
23	Libusha Kelly	[9]
24	Mark Kendrick	[8]
25	W. James Kent	[4] [7] [10] [11] [12] [13]
26	K. M. Kober	[13]
27	Robert M. Kuhn	[7] [10] [11] [12] [13]
28	Y. T. Lu	[4]
29	Francisco J. Mesa-Martinez	[8]
30	Webb Miller	[13]
31	David Pease	[8]
32	J. S. Pedersen	[10] [12] [13]
33	Ursula Pieper	[9]
34	Andy Pohl	[10] [12] [13]
35	Tom H. Pringle	[7]
36	Brian J. Raney	[10] [12] [13]
37	Brooke L. Rhead	[12] [13]
38	Eric Rice	[8]
39	Kate R. Rosenbloom	[10] [12] [13]
40	Krishna M. Roskin	[4] [5] [6]
41	Andrej Sali	[9]
42	Angela Schultz	[8]
43	M. Schwartz	[4]
44	Adam C. Siepel	[10] [12]
45	Kayla E. Smith	[10] [12] [13]
46	Don Speck	[8]
47	Mario Stanke	[12] [13] [14]
48	Charles W. Sugnet	[4] [10] [12]
49	A. Sultan-Qurraie	[10]
50	Archana Thakkapallayil	[12] [13]
51	Daryl J. Thomas	[4] [9] [10] [12]
52	Heather Trumbower	[10] [12] [13]
53	T. Wang	[13]
54	R. J. Weber	[4] [10]
55	M. Weirauch	[10]
56	Ann S. Zweig	[10] [12] [13]