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Richard Hughey

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2008
35EERichard Hughey, Andrea Di Blas: Finding the Next Computational Model: Experience with the UCSC Kestrel. Signal Processing Systems 53(1-2): 171-186 (2008)
2006
34EERichard Hughey, Andrea Di Blas: The UCSC Kestrel Application-Unspecific Processor. ASAP 2006: 163-168
2005
33EEKevin Karplus, Rachel Karchin, George Shackelford, Richard Hughey: Calibrating E-values for hidden Markov models using reverse-sequence null models. Bioinformatics 21(22): 4107-4115 (2005)
32EEAndrea Di Blas, David M. Dahle, Mark Diekhans, Leslie Grate, Jeffrey D. Hirschberg, Kevin Karplus, Hansjörg Keller, Mark Kendrick, Francisco J. Mesa-Martinez, David Pease, Eric Rice, Angela Schultz, Don Speck, Richard Hughey: The UCSC Kestrel Parallel Processor. IEEE Trans. Parallel Distrib. Syst. 16(1): 80-92 (2005)
31EEAndrea Di Blas, Arun Jagota, Richard Hughey: Optimizing neural networks on SIMD parallel computers. Parallel Computing 31(1): 97-115 (2005)
2003
30EEEric Rice, Richard Hughey: A New Iterative Structure for Hardware Division: The Parallel Paths Algorithm. IEEE Symposium on Computer Arithmetic 2003: 54-62
29EEAndrea Di Blas, Arun Jagota, Richard Hughey: A Range-Compaction Heuristic for Graph Coloring. J. Heuristics 9(6): 489-506 (2003)
2002
28 Melissa S. Cline, Richard Hughey, Kevin Karplus: Predicting reliable regions in protein sequence alignments. Bioinformatics 18(2): 306-314 (2002)
2001
27EEThomas E. Ferrin, Bruce A. Foster, Richard Hughey: High Performance Computing for Computational Biology - Session Introduction. Pacific Symposium on Biocomputing 2001: 238-239
26EELeslie Grate, Mark Diekhans, David M. Dahle, Richard Hughey: Sequence Analysis With the Kestrel SIMD Parallel Processor. Pacific Symposium on Biocomputing 2001: 263-274
25EEEric Rice, Richard Hughey: Molecular Fingerprinting on the SIMD Parallel Processor Kestrel. Pacific Symposium on Biocomputing 2001: 323-334
2000
24EEAndrea Di Blas, Richard Hughey: Explicit SIMD Programming for Asynchronous Applications. ASAP 2000: 258-267
23 Raymond Wheeler, Richard Hughey: Optimizing reduced-space sequence analysis. Bioinformatics 16(12): 1082-1090 (2000)
1999
22 David M. Dahle, Leslie Grate, Eric Rice, Richard Hughey: The UCSC Kestrel General Purpose Parallel Processor. PDPTA 1999: 1243-1249
1998
21 Kevin Karplus, Christian Barrett, Richard Hughey: Hidden Markov models for detecting remote protein homologies. Bioinformatics 14(10): 846-856 (1998)
20 C. Tarnas, Richard Hughey: Reduced space hidden Markov model training. Bioinformatics 14(5): 401-406 (1998)
19 Rachel Karchin, Richard Hughey: Weighting hidden Markov models for maximum discrimination. Bioinformatics 14(9): 772-782 (1998)
18EEJeffrey D. Hirschberg, David M. Dahle, Kevin Karplus, Don Speck, Richard Hughey: Kestrel: A Programmable Array for Sequence Analysis. VLSI Signal Processing 19(2): 115-126 (1998)
1997
17EEDavid M. Dahle, Jeffrey D. Hirschberg, Kevin Karplus, Hansjörg Keller, Eric Rice, Don Speck, Douglas H. Williams, Richard Hughey: Kestrel: Design of an 8-bit SIMD Parallel Processor. ARVLSI 1997: 145-
16EEEric Rice, Richard Hughey: Multiprecision Division on an 8-bit Processor. IEEE Symposium on Computer Arithmetic 1997: 74-81
15 J. Alicia Grice, Richard Hughey, Don Speck: Reduced space sequence alignment. Computer Applications in the Biosciences 13(1): 45-53 (1997)
14 Christian Barrett, Richard Hughey, Kevin Karplus: Scoring hidden Markov models. Computer Applications in the Biosciences 13(2): 191-199 (1997)
13 J. Z. Dalgaard, M. J. Moser, Richard Hughey, I. Saira Mian: Statistic Modeling, Phylogenetic Analysis and Strjucture Prediction of a Protein Splicing Domain Common to Infeins and Hedgehog Proteins. Journal of Computational Biology 4(2): 193- (1997)
1996
12EEJeffrey D. Hirschberg, Richard Hughey, Kevin Karplus, Don Speck: Kestrel: A Programmable Array for Sequence Analysis. ASAP 1996: 25-34
11 Richard Hughey, Anders Krogh: Hidden Markov models for sequence analysis: extension and analysis of the basic method. Computer Applications in the Biosciences 12(2): 95-107 (1996)
10 Kimmen Sjölander, Kevin Karplus, Michael Brown, Richard Hughey, Anders Krogh, I. Saira Mian, David Haussler: Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology. Computer Applications in the Biosciences 12(4): 327-345 (1996)
9 Richard Hughey: Parallel hardware for sequence comparison and alignment. Computer Applications in the Biosciences 12(6): 473-479 (1996)
1995
8EERichard Hughey: Parallel Sequence Comparison and Alignment. ASAP 1995: 137-140
7 J. Alicia Grice, Richard Hughey, Don Speck: Parallel Sequence Alignment in Limited Space. ISMB 1995: 145-153
1994
6 Yasubumi Sakakibara, Michael Brown, Richard Hughey, I. Saira Mian, Kimmen Sjölander, Rebecca C. Underwood, David Haussler: Recent Methods for RNA Modeling Using Stochastic Context-Free Grammars. CPM 1994: 289-306
5 Leslie Grate, Mark Herbster, Richard Hughey, David Haussler, I. Saira Mian, Harry Noller: RNA Modeling Using Gibbs Sampling and Stochastic Context Free Grammars. ISMB 1994: 138-146
1993
4 Michael Brown, Richard Hughey, Anders Krogh, I. Saira Mian, Kimmen Sjölander, David Haussler: Using Dirichlet Mixture Priors to Derive Hidden Markov Models for Protein Families. ISMB 1993: 47-55
3 Richard Hughey: Concurrent Error Detection on Programmable Systolic Arrays. IEEE Trans. Computers 42(6): 752-756 (1993)
1991
2 Richard Hughey, Daniel P. Lopresti: B-SYS: A 470-Processor Programmable Systolic Array. ICPP (1) 1991: 580-583
1990
1EERichard Hughey, Daniel P. Lopresti: A software approach to fault detection on programmable systolic arrays. SPDP 1990: 523-526

Coauthor Index

1Christian Barrett [14] [21]
2Andrea Di Blas [24] [29] [31] [32] [34] [35]
3Michael Brown [4] [6] [10]
4Melissa S. Cline [28]
5David M. Dahle [17] [18] [22] [26] [32]
6J. Z. Dalgaard [13]
7Mark Diekhans [26] [32]
8Thomas E. Ferrin [27]
9Bruce A. Foster [27]
10Leslie Grate [5] [22] [26] [32]
11J. Alicia Grice [7] [15]
12David Haussler [4] [5] [6] [10]
13Mark Herbster [5]
14Jeffrey D. Hirschberg [12] [17] [18] [32]
15Arun Jagota [29] [31]
16Rachel Karchin [19] [33]
17Kevin Karplus [10] [12] [14] [17] [18] [21] [28] [32] [33]
18Hansjörg Keller [17] [32]
19Mark Kendrick [32]
20Anders Krogh [4] [10] [11]
21Daniel P. Lopresti [1] [2]
22Francisco J. Mesa-Martinez [32]
23I. Saira Mian [4] [5] [6] [10] [13]
24M. J. Moser [13]
25Harry Noller [5]
26David Pease [32]
27Eric Rice [16] [17] [22] [25] [30] [32]
28Yasubumi Sakakibara [6]
29Angela Schultz [32]
30George Shackelford [33]
31Kimmen Sjölander [4] [6] [10]
32Don Speck [7] [12] [15] [17] [18] [32]
33C. Tarnas [20]
34Rebecca C. Underwood [6]
35Raymond Wheeler [23]
36Douglas H. Williams [17]

Colors in the list of coauthors

Copyright © Sun May 17 03:24:02 2009 by Michael Ley (ley@uni-trier.de)