Richard Hughey

2008
35	EE	Richard Hughey, Andrea Di Blas: Finding the Next Computational Model: Experience with the UCSC Kestrel. Signal Processing Systems 53(1-2): 171-186 (2008)
2006
34	EE	Richard Hughey, Andrea Di Blas: The UCSC Kestrel Application-Unspecific Processor. ASAP 2006: 163-168
2005
33	EE	Kevin Karplus, Rachel Karchin, George Shackelford, Richard Hughey: Calibrating E-values for hidden Markov models using reverse-sequence null models. Bioinformatics 21(22): 4107-4115 (2005)
32	EE	Andrea Di Blas, David M. Dahle, Mark Diekhans, Leslie Grate, Jeffrey D. Hirschberg, Kevin Karplus, Hansjörg Keller, Mark Kendrick, Francisco J. Mesa-Martinez, David Pease, Eric Rice, Angela Schultz, Don Speck, Richard Hughey: The UCSC Kestrel Parallel Processor. IEEE Trans. Parallel Distrib. Syst. 16(1): 80-92 (2005)
31	EE	Andrea Di Blas, Arun Jagota, Richard Hughey: Optimizing neural networks on SIMD parallel computers. Parallel Computing 31(1): 97-115 (2005)
2003
30	EE	Eric Rice, Richard Hughey: A New Iterative Structure for Hardware Division: The Parallel Paths Algorithm. IEEE Symposium on Computer Arithmetic 2003: 54-62
29	EE	Andrea Di Blas, Arun Jagota, Richard Hughey: A Range-Compaction Heuristic for Graph Coloring. J. Heuristics 9(6): 489-506 (2003)
2002
28		Melissa S. Cline, Richard Hughey, Kevin Karplus: Predicting reliable regions in protein sequence alignments. Bioinformatics 18(2): 306-314 (2002)
2001
27	EE	Thomas E. Ferrin, Bruce A. Foster, Richard Hughey: High Performance Computing for Computational Biology - Session Introduction. Pacific Symposium on Biocomputing 2001: 238-239
26	EE	Leslie Grate, Mark Diekhans, David M. Dahle, Richard Hughey: Sequence Analysis With the Kestrel SIMD Parallel Processor. Pacific Symposium on Biocomputing 2001: 263-274
25	EE	Eric Rice, Richard Hughey: Molecular Fingerprinting on the SIMD Parallel Processor Kestrel. Pacific Symposium on Biocomputing 2001: 323-334
2000
24	EE	Andrea Di Blas, Richard Hughey: Explicit SIMD Programming for Asynchronous Applications. ASAP 2000: 258-267
23		Raymond Wheeler, Richard Hughey: Optimizing reduced-space sequence analysis. Bioinformatics 16(12): 1082-1090 (2000)
1999
22		David M. Dahle, Leslie Grate, Eric Rice, Richard Hughey: The UCSC Kestrel General Purpose Parallel Processor. PDPTA 1999: 1243-1249
1998
21		Kevin Karplus, Christian Barrett, Richard Hughey: Hidden Markov models for detecting remote protein homologies. Bioinformatics 14(10): 846-856 (1998)
20		C. Tarnas, Richard Hughey: Reduced space hidden Markov model training. Bioinformatics 14(5): 401-406 (1998)
19		Rachel Karchin, Richard Hughey: Weighting hidden Markov models for maximum discrimination. Bioinformatics 14(9): 772-782 (1998)
18	EE	Jeffrey D. Hirschberg, David M. Dahle, Kevin Karplus, Don Speck, Richard Hughey: Kestrel: A Programmable Array for Sequence Analysis. VLSI Signal Processing 19(2): 115-126 (1998)
1997
17	EE	David M. Dahle, Jeffrey D. Hirschberg, Kevin Karplus, Hansjörg Keller, Eric Rice, Don Speck, Douglas H. Williams, Richard Hughey: Kestrel: Design of an 8-bit SIMD Parallel Processor. ARVLSI 1997: 145-
16	EE	Eric Rice, Richard Hughey: Multiprecision Division on an 8-bit Processor. IEEE Symposium on Computer Arithmetic 1997: 74-81
15		J. Alicia Grice, Richard Hughey, Don Speck: Reduced space sequence alignment. Computer Applications in the Biosciences 13(1): 45-53 (1997)
14		Christian Barrett, Richard Hughey, Kevin Karplus: Scoring hidden Markov models. Computer Applications in the Biosciences 13(2): 191-199 (1997)
13		J. Z. Dalgaard, M. J. Moser, Richard Hughey, I. Saira Mian: Statistic Modeling, Phylogenetic Analysis and Strjucture Prediction of a Protein Splicing Domain Common to Infeins and Hedgehog Proteins. Journal of Computational Biology 4(2): 193- (1997)
1996
12	EE	Jeffrey D. Hirschberg, Richard Hughey, Kevin Karplus, Don Speck: Kestrel: A Programmable Array for Sequence Analysis. ASAP 1996: 25-34
11		Richard Hughey, Anders Krogh: Hidden Markov models for sequence analysis: extension and analysis of the basic method. Computer Applications in the Biosciences 12(2): 95-107 (1996)
10		Kimmen Sjölander, Kevin Karplus, Michael Brown, Richard Hughey, Anders Krogh, I. Saira Mian, David Haussler: Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology. Computer Applications in the Biosciences 12(4): 327-345 (1996)
9		Richard Hughey: Parallel hardware for sequence comparison and alignment. Computer Applications in the Biosciences 12(6): 473-479 (1996)
1995
8	EE	Richard Hughey: Parallel Sequence Comparison and Alignment. ASAP 1995: 137-140
7		J. Alicia Grice, Richard Hughey, Don Speck: Parallel Sequence Alignment in Limited Space. ISMB 1995: 145-153
1994
6		Yasubumi Sakakibara, Michael Brown, Richard Hughey, I. Saira Mian, Kimmen Sjölander, Rebecca C. Underwood, David Haussler: Recent Methods for RNA Modeling Using Stochastic Context-Free Grammars. CPM 1994: 289-306
5		Leslie Grate, Mark Herbster, Richard Hughey, David Haussler, I. Saira Mian, Harry Noller: RNA Modeling Using Gibbs Sampling and Stochastic Context Free Grammars. ISMB 1994: 138-146
1993
4		Michael Brown, Richard Hughey, Anders Krogh, I. Saira Mian, Kimmen Sjölander, David Haussler: Using Dirichlet Mixture Priors to Derive Hidden Markov Models for Protein Families. ISMB 1993: 47-55
3		Richard Hughey: Concurrent Error Detection on Programmable Systolic Arrays. IEEE Trans. Computers 42(6): 752-756 (1993)
1991
2		Richard Hughey, Daniel P. Lopresti: B-SYS: A 470-Processor Programmable Systolic Array. ICPP (1) 1991: 580-583
1990
1	EE	Richard Hughey, Daniel P. Lopresti: A software approach to fault detection on programmable systolic arrays. SPDP 1990: 523-526

Coauthor Index

1	Christian Barrett	[14] [21]
2	Andrea Di Blas	[24] [29] [31] [32] [34] [35]
3	Michael Brown	[4] [6] [10]
4	Melissa S. Cline	[28]
5	David M. Dahle	[17] [18] [22] [26] [32]
6	J. Z. Dalgaard	[13]
7	Mark Diekhans	[26] [32]
8	Thomas E. Ferrin	[27]
9	Bruce A. Foster	[27]
10	Leslie Grate	[5] [22] [26] [32]
11	J. Alicia Grice	[7] [15]
12	David Haussler	[4] [5] [6] [10]
13	Mark Herbster	[5]
14	Jeffrey D. Hirschberg	[12] [17] [18] [32]
15	Arun Jagota	[29] [31]
16	Rachel Karchin	[19] [33]
17	Kevin Karplus	[10] [12] [14] [17] [18] [21] [28] [32] [33]
18	Hansjörg Keller	[17] [32]
19	Mark Kendrick	[32]
20	Anders Krogh	[4] [10] [11]
21	Daniel P. Lopresti	[1] [2]
22	Francisco J. Mesa-Martinez	[32]
23	I. Saira Mian	[4] [5] [6] [10] [13]
24	M. J. Moser	[13]
25	Harry Noller	[5]
26	David Pease	[32]
27	Eric Rice	[16] [17] [22] [25] [30] [32]
28	Yasubumi Sakakibara	[6]
29	Angela Schultz	[32]
30	George Shackelford	[33]
31	Kimmen Sjölander	[4] [6] [10]
32	Don Speck	[7] [12] [15] [17] [18] [32]
33	C. Tarnas	[20]
34	Rebecca C. Underwood	[6]
35	Raymond Wheeler	[23]
36	Douglas H. Williams	[17]

Colors in the list of coauthors