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Douglas L. Brutlag

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2007
46EETsung-Han Chiang, Mehmet Serkan Apaydin, Douglas L. Brutlag, David Hsu, Jean-Claude Latombe: Using Stochastic Roadmap Simulation to Predict Experimental Quantities in Protein Folding Kinetics: Folding Rates and Phi-Values. Journal of Computational Biology 14(5): 578-593 (2007)
2006
45EEEugene Fratkin, Brian T. Naughton, Douglas L. Brutlag, Serafim Batzoglou: MotifCut: regulatory motifs finding with maximum density subgraphs. ISMB (Supplement of Bioinformatics) 2006: 156-157
44EETsung-Han Chiang, Mehmet Serkan Apaydin, Douglas L. Brutlag, David Hsu, Jean-Claude Latombe: Predicting Experimental Quantities in Protein Folding Kinetics Using Stochastic Roadmap Simulation. RECOMB 2006: 410-424
43EEJessica Ebert, Douglas L. Brutlag: Development and validation of a consistency based multiple structure alignment algorithm. Bioinformatics 22(9): 1080-1087 (2006)
2005
42EEEdward J. Bertaccini, Jessica Shapiro, Douglas L. Brutlag, James R. Trudell: Homology Modeling of a Human Glycine Alpha 1 Receptor Reveals a Plausible Anesthetic Binding Site. Journal of Chemical Information and Modeling 45(1): 128-135 (2005)
41EEQiaojuan Jane Su, Lin Lu, Serge Saxonov, Douglas L. Brutlag: eBLOCKs: enumerating conserved protein blocks to achieve maximal sensitivity and specificity. Nucleic Acids Research 33(Database-Issue): 178-182 (2005)
2004
40EEHaidong Wang, Eran Segal, Asa Ben-Hur, Daphne Koller, Douglas L. Brutlag: Identifying Protein-Protein Interaction Sites on a Genome-Wide Scale. NIPS 2004
39 Yueyi Liu, Liping Wei, Serafim Batzoglou, Douglas L. Brutlag, Jun S. Liu, X. Shirley Liu: A suite of web-based programs to search for transcriptional regulatory motifs. Nucleic Acids Research 32(Web-Server-Issue): 204-207 (2004)
38 Jessica Shapiro, Douglas L. Brutlag: FoldMiner and LOCK 2: protein structure comparison and motif discovery on the web. Nucleic Acids Research 32(Web-Server-Issue): 536-541 (2004)
2003
37EEMike P. Liang, Douglas L. Brutlag, Russ B. Altman: Automatic Construction of 3D Structural Motifs for Protein Function Prediction. CSB 2003: 613-614
36EEAsa Ben-Hur, Douglas L. Brutlag: Remote homology detection: a motif based approach. ISMB (Supplement of Bioinformatics) 2003: 26-33
35EEMike P. Liang, Douglas L. Brutlag, Russ B. Altman: Automated Construction of Structural Motifs for Predicting Functional Sites on Protein Structures. Pacific Symposium on Biocomputing 2003: 204-215
34 Steven P. Bennett, Craig G. Nevill-Manning, Douglas L. Brutlag: 3MOTIF: visualizing conserved protein sequence motifs in the protein structure database. Bioinformatics 19(4): 541-542 (2003)
33EEMehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe, Chris Varma: Stochastic Roadmap Simulation: An Efficient Representation and Algorithm for Analyzing Molecular Motion. Journal of Computational Biology 10(3/4): 257-281 (2003)
32 Mike P. Liang, D. Rey Banatao, Teri E. Klein, Douglas L. Brutlag, Russ B. Altman: WebFEATURE: an interactive web tool for identifying and visualizing functional sites on macromolecular structures. Nucleic Acids Research 31(13): 3324-3327 (2003)
31 Steven P. Bennett, Lin Lu, Douglas L. Brutlag: 3MATRIX and 3MOTIF: a protein structure visualization system for conserved sequence motifs. Nucleic Acids Research 31(13): 3328-3332 (2003)
2002
30 Mehmet Serkan Apaydin, Carlos Guestrin, Chris Varma, Douglas L. Brutlag, Jean-Claude Latombe: Stochastic roadmap simulation for the study of ligand-protein interactions. ECCB 2002: 18-26
29 Douglas L. Brutlag, Mehmet Serkan Apaydin, Carlos Guestrin, David Hsu, Chris Varma, Amit Pal Singh, Jean-Claude Latombe: Using robotics to fold proteins and dock ligands. ECCB 2002: 74-74
28EEMehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe: Stochastic roadmap simulation: an efficient representation and algorithm for analyzing molecular motion. RECOMB 2002: 12-21
2001
27 Mehmet Serkan Apaydin, Amit Pal Singh, Douglas L. Brutlag, Jean-Claude Latombe: Capturing Molecular Energy Landscapes with Probabilistic Conformational Roadmaps. ICRA 2001: 932-939
26EEX. Liu, Douglas L. Brutlag, Jun S. Liu: BioProspector: Discovering Conserved DNA Motifs in Upstream Regulatory Regions of Co-Expressed Genes. Pacific Symposium on Biocomputing 2001: 127-138
25 Jimmy Y. Huang, Douglas L. Brutlag: The EMOTIF database. Nucleic Acids Research 29(1): 202-204 (2001)
2000
24 Thomas D. Wu, Craig G. Nevill-Manning, Douglas L. Brutlag: Fast probabilistic analysis of sequence function using scoring matrices. Bioinformatics 16(3): 233-244 (2000)
23 Scott C. Schmidler, Jun S. Liu, Douglas L. Brutlag: Bayesian Segmentation of Protein Secondary Structure. Journal of Computational Biology 7(1-2): 233-248 (2000)
1999
22 Thomas Lengauer, Reinhard Schneider, Peer Bork, Douglas L. Brutlag, Janice I. Glasgow, Hans-Werner Mewes, Ralf Zimmer: Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology, August 6-10, 1999, Heidelberg, Germany AAAI 1999
21 Amit Pal Singh, Jean-Claude Latombe, Douglas L. Brutlag: A Motion Planning Approach to Flexible Ligand Binding. ISMB 1999: 252-261
20 Thomas D. Wu, Craig G. Nevill-Manning, Douglas L. Brutlag: Minimal-Risk Scoring Matrices for Sequence Analysis. Journal of Computational Biology 6(2): 219-236 (1999)
1998
19EEThomas D. Wu, Trevor Hastie, Scott C. Schmidler, Douglas L. Brutlag: Regression analysis of multiple protein structures. RECOMB 1998: 276-284
18 Thomas D. Wu, Scott C. Schmidler, Trevor Hastie, Douglas L. Brutlag: Regression Analysis of Multiple Protein Structures. Journal of Computational Biology 5(3): 585-596 (1998)
1997
17 Craig G. Nevill-Manning, Komal S. Sethi, Thomas D. Wu, Douglas L. Brutlag: Enumerating and Ranking Discrete Motifs. ISMB 1997: 202-209
16 Amit Pal Singh, Douglas L. Brutlag: Hierarchical Protein Structure Superposition Using Both Secondary Structure and Atomic Representations. ISMB 1997: 284-293
1996
15 Thomas D. Wu, Douglas L. Brutlag: Discovering Empirically Conserved Amino Acid Substitution Groups in Databases of Protein Families. ISMB 1996: 230-240
1995
14 Thomas D. Wu, Douglas L. Brutlag: Identification of Protein Motifs Using Conserved Amino Acid Properties and Partitioning Techniques. ISMB 1995: 402-410
1994
13 Russ B. Altman, Douglas L. Brutlag, Peter D. Karp, Richard H. Lathrop, David B. Searls: Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, August 14-17, 1994, Stanford University, Stanford, California, USA AAAI 1994
12 Tod M. Klingler, Douglas L. Brutlag: Discovering Side-Chain Correlations In alpha-Helices. ISMB 1994: 236-243
11 Dalit Naor, Douglas L. Brutlag: On Near-Optimal Alignments of Biological Sequences. Journal of Computational Biology 1(4): 349- (1994)
1993
10 Dalit Naor, Douglas L. Brutlag: On Suboptimal Alignments of Biological Sequences. CPM 1993: 179-196
9 Tod M. Klingler, Douglas L. Brutlag: Detection of Correlations in tRNA Sequences with Structural Implications. ISMB 1993: 225-233
8EEDouglas L. Brutlag, Jean-Pierre Dautricourt, Ron Diaz, Jeff Fier, Bruce Moxon, Richard Stamm: BLAZETM: An Implementation of the Smith-Waterman Sequence Comparison Algorithm on a Massively Parallel Computer. Computers & Chemistry 17(2): 203-207 (1993)
1991
7 Douglas L. Brutlag, A. R. Galper, D. H. Millis: Knowledge-based simulation of DNA metabolism: prediction of enzyme action. Computer Applications in the Biosciences 7(1): 9-19 (1991)
1990
6 Douglas L. Brutlag, Jean-Pierre Dautricourt, S. Maulik, J. Relph: Improved sensitivity of biological sequence database searches. Computer Applications in the Biosciences 6(3): 237-245 (1990)
1986
5 Dennis H. Smith, Douglas L. Brutlag, Peter Friedland, Laurence H. Kedes: BIONET: national computer resource for molecular biology. Nucleic Acids Research 14(1): 17-20 (1986)
1984
4 R. M. Abarbanel, Paul R. Wieneke, E. Mansfield, David A. Jaffe, Douglas L. Brutlag: Rapid searches for complex patterns in biological molecules. Nucleic Acids Research 12(1): 263-280 (1984)
1982
3 Douglas L. Brutlag, J. Clayton, Peter Friedland, Laurence H. Kedes: SEQ: a nucleotide sequence analysis and recombination system. Nucleic Acids Research 10(1): 279-294 (1982)
2 R. Bach, Peter Friedland, Douglas L. Brutlag, Laurence H. Kedes: MAXAMIZE. A DNA sequencing strategy advisor. Nucleic Acids Research 10(1): 295-304 (1982)
1 Peter Friedland, Laurence H. Kedes, Douglas L. Brutlag, Yumi Iwasaki, R. Bach: GENESIS, a knowledge-based genetic engineering simulation system for representation of genetic data and experiment planning. Nucleic Acids Research 10(1): 323-340 (1982)

Coauthor Index

1R. M. Abarbanel [4]
2Russ B. Altman [13] [32] [35] [37]
3Mehmet Serkan Apaydin [27] [28] [29] [30] [33] [44] [46]
4R. Bach [1] [2]
5D. Rey Banatao [32]
6Serafim Batzoglou [39] [45]
7Asa Ben-Hur [36] [40]
8Steven P. Bennett [31] [34]
9Edward J. Bertaccini [42]
10Peer Bork [22]
11Tsung-Han Chiang [44] [46]
12J. Clayton [3]
13Jean-Pierre Dautricourt [6] [8]
14Ron Diaz [8]
15Jessica Ebert [43]
16Jeff Fier [8]
17Eugene Fratkin [45]
18Peter Friedland [1] [2] [3] [5]
19A. R. Galper [7]
20Janice I. Glasgow [22]
21Carlos Guestrin [28] [29] [30] [33]
22Trevor Hastie [18] [19]
23David Hsu [28] [29] [33] [44] [46]
24Jimmy Y. Huang [25]
25Yumi Iwasaki [1]
26David A. Jaffe [4]
27Peter D. Karp [13]
28Laurence H. Kedes [1] [2] [3] [5]
29Teri E. Klein [32]
30Tod M. Klingler [9] [12]
31Daphne Koller [40]
32Richard H. Lathrop [13]
33Jean-Claude Latombe [21] [27] [28] [29] [30] [33] [44] [46]
34Thomas Lengauer [22]
35Mike P. Liang [32] [35] [37]
36Jun S. Liu [23] [26] [39]
37X. Liu [26]
38X. Shirley Liu [39]
39Yueyi Liu [39]
40Lin Lu [31] [41]
41E. Mansfield [4]
42S. Maulik [6]
43Hans-Werner Mewes [22]
44D. H. Millis [7]
45Bruce Moxon [8]
46Dalit Naor [10] [11]
47Brian T. Naughton [45]
48Craig G. Nevill-Manning [17] [20] [24] [34]
49J. Relph [6]
50Serge Saxonov [41]
51Scott C. Schmidler [18] [19] [23]
52Reinhard Schneider [22]
53David B. Searls [13]
54Eran Segal [40]
55Komal S. Sethi [17]
56Jessica Shapiro [38] [42]
57Amit Pal Singh [16] [21] [27] [29]
58Dennis H. Smith [5]
59Richard Stamm [8]
60Qiaojuan Jane Su [41]
61James R. Trudell [42]
62Chris Varma [29] [30] [33]
63Haidong Wang [40]
64Liping Wei [39]
65Paul R. Wieneke [4]
66Thomas D. Wu [14] [15] [17] [18] [19] [20] [24]
67Ralf Zimmer [22]

Colors in the list of coauthors

Copyright © Sun May 17 03:24:02 2009 by Michael Ley (ley@uni-trier.de)