Craig J. Benham

2007
17	EE	Conrad A. Nieduszynski, Shin-ichiro Hiraga, Prashanth Ak, Craig J. Benham, Anne D. Donaldson: OriDB: a DNA replication origin database. Nucleic Acids Research 35(Database-Issue): 40-46 (2007)
2006
16	EE	Huiquan Wang, Craig J. Benham: Promoter prediction and annotation of microbial genomes based on DNA sequence and structural responses to superhelical stress. BMC Bioinformatics 7: 248 (2006)
15	EE	Huiquan Wang, Miroslava Kaloper, Craig J. Benham: SIDDBASE: a database containing the stress-induced DNA duplex destabilization (SIDD) profiles of complete microbial genomes. Nucleic Acids Research 34(Database-Issue): 373-378 (2006)
2005
14	EE	Huiquan Wang, Craig J. Benham: Annotation of Promoter Regions in Microbial Genomes Based on DNA Structural and Sequence Properties. Systems Biology and Regulatory Genomics 2005: 212-224
2004
13		Huiquan Wang, Craig J. Benham: Superhelically Destabilized Sites in the E. coli Genome: Implications for Promoter Prediction in Prokaryotes. German Conference on Bioinformatics 2004: 217-226
12	EE	Craig J. Benham, Chengpeng Bi: The Analysis of Stress-Induced Duplex Destabilization in Long Genomic DNA Sequences. Journal of Computational Biology 11(4): 519-543 (2004)
2003
11	EE	Chengpeng Bi, Craig J. Benham: The Approximate Algorithm for Analysis of the Strand Separation Transition in Super helical DNA Using Nearest Neighbor Energetics. CSB 2003: 460-461
2001
10		S. Goetze, A. Knopp, Craig J. Benham, Stephen A. Krawetz, Jürgen Bode: Biomathematical and in vitro analysis of destabilized regions in the interferon gene cluster. German Conference on Bioinformatics 2001: 161
9		A. Knopp, S. Goetze, Craig J. Benham, Matthias Frisch, Stephen A. Krawetz, Jürgen Bode: Analysis of biomathematically predicted Scaffold / Matrix Attached Regions (S/MARs) by three different approaches. German Conference on Bioinformatics 2001: 200
8		Craig J. Benham: In Silico Biology: The emergence of a new biological methodology. HERCMA 2001: 91
7	EE	Craig J. Benham: Stress-Induced DNA Duplex Destabilization in Transcriptional Initiation. Pacific Symposium on Biocomputing 2001: 103-114
1998
6	EE	Richard M. Fye, Craig J. Benham: A formally exact method to numerically analyze local denaturation in superhelical DNA. RECOMB 1998: 79-84
1997
5		Gabriela Hristescu, Craig J. Benham, Martin Farach: DNA Strand Separation Prediction: A Parallel Implementation. PDPTA 1997: 610-619
1996
4		Craig J. Benham: Sites of Superhelical DNA Duplex Destabilization occour at Specific Regulatory Regions. German Conference on Bioinformatics 1996: 46-52
3		Craig J. Benham: Computation of DNA structural variability - a new predictor of DNA regulatory regions. Computer Applications in the Biosciences 12(5): 375-381 (1996)
1995
2		Craig J. Benham, Sampath Kannan, Tandy Warnow: Of Chicken Teeth and Mouse Eyes, or Generalized Character Compatibility. CPM 1995: 17-26
1		Craig J. Benham, Sampath Kannan, Michael Paterson, Tandy Warnow: Hen's Teeth and Whale's Feet: Generalized Characters and Their Compatibility. Journal of Computational Biology 2(4): 515-525 (1995)

Coauthor Index

1	Prashanth Ak	[17]
2	Chengpeng Bi	[11] [12]
3	Jürgen Bode	[9] [10]
4	Anne D. Donaldson	[17]
5	Martin Farach-Colton (Martin Farach)	[5]
6	Matthias Frisch	[9]
7	Richard M. Fye	[6]
8	S. Goetze	[9] [10]
9	Shin-ichiro Hiraga	[17]
10	Gabriela Hristescu	[5]
11	Miroslava Kaloper	[15]
12	Sampath Kannan	[1] [2]
13	A. Knopp	[9] [10]
14	Stephen A. Krawetz	[9] [10]
15	Conrad A. Nieduszynski	[17]
16	Michael Paterson	[1]
17	Huiquan Wang	[13] [14] [15] [16]
18	Tandy Warnow	[1] [2]

Colors in the list of coauthors