Jun S. Liu

2008
29	EE	Dongsheng Che, Guojun Li, Shane T. Jensen, Jun S. Liu, Ying Xu: PFP: A Computational Framework for Phylogenetic Footprinting in Prokaryotic Genomes. ISBRA 2008: 110-121
2007
28	EE	Guo-Cheng Yuan, Jun S. Liu: Statistial Analysis of nucleosome occupancy and histone modification data. BIBE 2007: 8
27		Jiajun Gu, Jun S. Liu: Bayesian Biclustering of Microarray Data. BIOCOMP 2007: 113-120
26	EE	Gopi Goswami, Jun S. Liu: On learning strategies for evolutionary Monte Carlo. Statistics and Computing 17(1): 23-38 (2007)
2006
25	EE	Xuegong Zhang, Xin Lu, Qian Shi, Xiu-qin Xu, Hon-chiu E. Leung, Lyndsay N. Harris, James D. Iglehart, Alexander Miron, Jun S. Liu, Wing Hung Wong: Recursive SVM feature selection and sample classification for mass-spectrometry and microarray data. BMC Bioinformatics 7: 197 (2006)
24	EE	Erin M. Conlon, Joon J. Song, Jun S. Liu: Bayesian models for pooling microarray studies with multiple sources of replications. BMC Bioinformatics 7: 247 (2006)
2005
23	EE	Kui Zhang, Zhaohui S. Qin, Ting Chen, Jun S. Liu, Michael S. Waterman, Fengzhu Sun: HapBlock: haplotype block partitioning and tag SNP selection software using a set of dynamic programming algorithms. Bioinformatics 21(1): 131-134 (2005)
22	EE	Pengyu Hong, X. Shirley Liu, Qing Zhou, Xin Lu, Jun S. Liu, Wing Hung Wong: A boosting approach for motif modeling using ChIP-chip data. Bioinformatics 21(11): 2636-2643 (2005)
21	EE	Dongsheng Che, Shane T. Jensen, Liming Cai, Jun S. Liu: BEST: Binding-site Estimation Suite of Tools. Bioinformatics 21(12): 2909-2911 (2005)
20	EE	Shane T. Jensen, Lei Shen, Jun S. Liu: Combining phylogenetic motif discovery and motif clustering to predict co-regulated genes. Bioinformatics 21(20): 3832-3839 (2005)
19	EE	Wenxuan Zhong, Peng Zeng, Ping Ma, Jun S. Liu, Michael Yu Zhu: RSIR: regularized sliced inverse regression for motif discovery. Bioinformatics 21(22): 4169-4175 (2005)
2004
18	EE	Andrew F. Neuwald, Jun S. Liu: Gapped alignment of protein sequence motifs through Monte Carlo optimization of a hidden Markov model. BMC Bioinformatics 5: 157 (2004)
17	EE	Shane T. Jensen, Jun S. Liu: BioOptimizer: a Bayesian scoring function approach to motif discovery. Bioinformatics 20(10): 1557-1564 (2004)
16	EE	Qing Zhou, Jun S. Liu: Modeling within-motif dependence for transcription factor binding site predictions. Bioinformatics 20(6): 909-916 (2004)
15	EE	Haiyan Huang, Ming-Chih J. Kao, Xianghong Jasmine Zhou, Jun S. Liu, Wing Hung Wong: Determination of Local Statistical Significance of Patterns in Markov Sequences with Application to Promoter Element Identification. Journal of Computational Biology 11(1): 1-14 (2004)
14		Yueyi Liu, Liping Wei, Serafim Batzoglou, Douglas L. Brutlag, Jun S. Liu, X. Shirley Liu: A suite of web-based programs to search for transcriptional regulatory motifs. Nucleic Acids Research 32(Web-Server-Issue): 204-207 (2004)
2003
13	EE	Xin Lu, Wen Zhang, Zhaohui S. Qin, Jun S. Liu: Statistical Resynchronization and Detection of Periodic Transcripts. CSB 2003: 394-395
2002
12	EE	Tianhua Niu, Xin Lu, Hosung Kang, Zhaohui S. Qin, Jun S. Liu: Haplotype Inference and Its Application in Linkage Disequilibrium Mapping. Computational Methods for SNPs and Haplotype Inference 2002: 48-61
11	EE	Kui Zhang, Ting Chen, Michael S. Waterman, Zhaohui S. Qin, Jun S. Liu, Fengzhu Sun: Dynamic Programming Algorithms for Haplotype Block Partitioning and Tag SNP Selection Using Haplotype Data or Genotype Data. Computational Methods for SNPs and Haplotype Inference 2002: 96-112
10	EE	Xiaodong Wang, Rong Chen, Jun S. Liu: Monte Carlo Bayesian Signal Processing for Wireless Communications. VLSI Signal Processing 30(1-3): 89-105 (2002)
2001
9	EE	X. Liu, Douglas L. Brutlag, Jun S. Liu: BioProspector: Discovering Conserved DNA Motifs in Upstream Regulatory Regions of Co-Expressed Genes. Pacific Symposium on Biocomputing 2001: 127-138
2000
8	EE	Jason Cong, Tianming Kong, Faming Liang, Jun S. Liu, Wing Hung Wong, Dongmin Xu: Dynamic weighting Monte Carlo for constrained floorplan designs in mixed signal application. ASP-DAC 2000: 277-282
7		Rong Chen, Xiaodong Wang, Jun S. Liu: Adaptive joint detection and decoding in flat-fading channels via mixture Kalman filtering. IEEE Transactions on Information Theory 46(6): 2079-2094 (2000)
6		Scott C. Schmidler, Jun S. Liu, Douglas L. Brutlag: Bayesian Segmentation of Protein Secondary Structure. Journal of Computational Biology 7(1-2): 233-248 (2000)
1999
5	EE	Jason Cong, Tianming Kong, Dongmin Xu, Faming Liang, Jun S. Liu, Wing Hung Wong: Relaxed Simulated Tempering for VLSI Floorplan Designs. ASP-DAC 1999: 13-16
4		Jun S. Liu, Charles E. Lawrence: Bayesian inference on biopolymer models. Bioinformatics 15(1): 38-52 (1999)
1998
3		Jun Zhu, Jun S. Liu, Charles E. Lawrence: Bayesian adaptive sequence alignment algorithms. Bioinformatics 14(1): 25-39 (1998)
1997
2		Jun Zhu, Jun S. Liu, Charles E. Lawrence: Bayesian Adaptive Alignment and Inference. ISMB 1997: 358-368
1994
1		Charles E. Lawrence, Stephen F. Altschul, John C. Wootton, Mark S. Boguski, Andrew F. Neuwald, Jun S. Liu: A Gibbs Sampler for the Detection of Subtle Motifs in Multiple Sequences. HICSS (5) 1994: 245-254

Coauthor Index

1	Stephen F. Altschul	[1]
2	Serafim Batzoglou	[14]
3	Mark S. Boguski	[1]
4	Douglas L. Brutlag	[6] [9] [14]
5	Liming Cai	[21]
6	Dongsheng Che	[21] [29]
7	Rong Chen	[7] [10]
8	Ting Chen	[11] [23]
9	Jason Cong	[5] [8]
10	Erin M. Conlon	[24]
11	Gopi Goswami	[26]
12	Jiajun Gu	[27]
13	Lyndsay N. Harris	[25]
14	Pengyu Hong	[22]
15	Haiyan Huang	[15]
16	James D. Iglehart	[25]
17	Shane T. Jensen	[17] [20] [21] [29]
18	Hosung Kang	[12]
19	Ming-Chih J. Kao	[15]
20	Tianming Kong	[5] [8]
21	Charles E. Lawrence	[1] [2] [3] [4]
22	Hon-chiu E. Leung	[25]
23	Guojun Li	[29]
24	Faming Liang	[5] [8]
25	X. Liu	[9]
26	X. Shirley Liu	[14] [22]
27	Yueyi Liu	[14]
28	Xin Lu	[12] [13] [22] [25]
29	Ping Ma	[19]
30	Alexander Miron	[25]
31	Andrew F. Neuwald	[1] [18]
32	Tianhua Niu	[12]
33	Zhaohui S. Qin	[11] [12] [13] [23]
34	Scott C. Schmidler	[6]
35	Lei Shen	[20]
36	Qian Shi	[25]
37	Joon J. Song	[24]
38	Fengzhu Sun	[11] [23]
39	Xiaodong Wang	[7] [10]
40	Michael S. Waterman	[11] [23]
41	Liping Wei	[14]
42	Wing Hung Wong	[5] [8] [15] [22] [25]
43	John C. Wootton	[1]
44	Dongmin Xu	[5] [8]
45	Xiu-qin Xu	[25]
46	Ying Xu	[29]
47	Guo-Cheng Yuan	[28]
48	Peng Zeng	[19]
49	Kui Zhang	[11] [23]
50	Wen Zhang	[13]
51	Xuegong Zhang	[25]
52	Wenxuan Zhong	[19]
53	Qing Zhou	[16] [22]
54	Xianghong Jasmine Zhou	[15]
55	Jun Zhu	[2] [3]
56	Michael Yu Zhu	[19]

Colors in the list of coauthors