Ilya N. Shindyalov

2006
20	EE	Chittibabu Guda, Lipika R. Pal, Ilya N. Shindyalov: DMAPS: a database of multiple alignments for protein structures. Nucleic Acids Research 34(Database-Issue): 273-276 (2006)
2004
19	EE	Philip E. Bourne, C. K. J. Allerston, Werner G. Krebs, Wilfred W. Li, Ilya N. Shindyalov, Adam Godzik, Iddo Friedberg, Tong Liu, David L. Wild, Seungwoo Hwang, Zoubin Ghahramani, Li Chen, John D. Westbrook: The Status of Structural Genomics Defined Through the Analysis of Current Targets and Structures. Pacific Symposium on Biocomputing 2004: 375-386
18	EE	Dmitry Pekurovsky, Ilya N. Shindyalov, Philip E. Bourne: A case study of high-throughput biological data processing on parallel platforms. Bioinformatics 20(12): 1940-1947 (2004)
17	EE	Yuting Jia, T. Gregory Dewey, Ilya N. Shindyalov, Philip E. Bourne: A New Scoring Function and Associated Statistical Significance for Structure Alignment by CE. Journal of Computational Biology 11(5): 787-799 (2004)
16	EE	Wilfred W. Li, Robert W. Byrnes, Jim Hayes, Adam Birnbaum, Vicente M. Reyes, Atif Shahab, Coleman Mosley, Dmitry Pekurovsky, Greg B. Quinn, Ilya N. Shindyalov, Henri Casanova, Larry Ang, Fran Berman, Peter W. Arzberger, Mark A. Miller, Philip E. Bourne: The Encyclopedia of Life Project: Grid Software and Deployment. New Generation Comput. 22(2): (2004)
15		Chittibabu Guda, Sifang Lu, Eric D. Scheeff, Philip E. Bourne, Ilya N. Shindyalov: CE-MC: a multiple protein structure alignment server. Nucleic Acids Research 32(Web-Server-Issue): 100-103 (2004)
2003
14		Dmitry Pekurovsky, Ilya N. Shindyalov, Philip E. Bourne: Parallel Processing on Large Redudant Biological Data Sets: Protein Structures Classification with CEPAR. PARCO 2003: 661-668
13		Nickolai Alexandrov, Ilya N. Shindyalov: PDP: protein domain parser. Bioinformatics 19(3): 429-430 (2003)
2002
12		Julia V. Ponomarenko, Philip E. Bourne, Ilya N. Shindyalov: Building an automated classification of DNA-binding protein domains. ECCB 2002: 192-201
11		Wilfred W. Li, Boojala V. B. Reddy, John G. Tate, Ilya N. Shindyalov, Philip E. Bourne: CKAAPs DB: a Conserved Key Amino Acid Positions DataBase. Nucleic Acids Research 30(1): 409-411 (2002)
2001
10	EE	Chittibabu Guda, Eric D. Scheeff, Philip E. Bourne, Ilya N. Shindyalov: A New Algorithm for the Alignment of Multiple Protein Structures Using Monte Carlo Optimization. Pacific Symposium on Biocomputing 2001: 275-286
9		Ilya N. Shindyalov, Philip E. Bourne: A database and tools for 3-D protein structure comparison and alignment using the Combinatorial Extension (CE) algorithm. Nucleic Acids Research 29(1): 228-229 (2001)
8		Wilfred W. Li, Boojala V. B. Reddy, Ilya N. Shindyalov, Philip E. Bourne: CKAAPs DB: a conserved key amino acid positions database. Nucleic Acids Research 29(1): 329-331 (2001)
2000
7		Helen M. Berman, John D. Westbrook, Zukang Feng, Gary Gilliland, T. N. Bhat, Helge Weissig, Ilya N. Shindyalov, Philip E. Bourne: The Protein Data Bank. Nucleic Acids Research 28(1): 235-242 (2000)
1997
6		Ilya N. Shindyalov, Philip E. Bourne: Protein data representation and query using optimized data decomposition. Computer Applications in the Biosciences 13(5): 487-496 (1997)
1995
5	EE	Ilya N. Shindyalov, Weider Chang, J. A. Cooper, Philip E. Bourne: Design and use of a software framework to obtain information derived from macromolecular structure data. HICSS (5) 1995: 207-216
4		Nikolay A. Kolchanov, Oleg V. Vishnevsky, Vladimir N. Babenko, Alexander E. Kel, Ilya N. Shindyalov: Identification of CDNA Sequences by Specific Oligonucleotide Sets - A Computer Tool and Application. ISMB 1995: 206-214
1994
3		Weider Chang, Ilya N. Shindyalov, Calton Pu, Philip E. Bourne: Design and Application of a C++ Macromolecular Class Library. ISMB 1994: 70-77
2		Weider Chang, Ilya N. Shindyalov, Calton Pu, Philip E. Bourne: Design and application of PDBlib, a C++ macromolecular class library. Computer Applications in the Biosciences 10(6): 575-586 (1994)
1992
1		Victor B. Strelets, Ilya N. Shindyalov, Nikolay A. Kolchanov, Luciano Milanesi: Fast, statistically based alignment of amino acid sequences on the base of diagonal fragments of DOT-matrices. Computer Applications in the Biosciences 8(6): 529-534 (1992)

Coauthor Index

1	Nickolai Alexandrov	[13]
2	C. K. J. Allerston	[19]
3	Larry Ang	[16]
4	Peter W. Arzberger	[16]
5	Vladimir N. Babenko	[4]
6	Francine Berman (Fran Berman)	[16]
7	Helen M. Berman	[7]
8	T. N. Bhat	[7]
9	Adam Birnbaum	[16]
10	Philip E. Bourne	[2] [3] [5] [6] [7] [8] [9] [10] [11] [12] [14] [15] [16] [17] [18] [19]
11	Robert W. Byrnes	[16]
12	Henri Casanova	[16]
13	Weider Chang	[2] [3] [5]
14	Li Chen	[19]
15	J. A. Cooper	[5]
16	T. Gregory Dewey	[17]
17	Zukang Feng	[7]
18	Iddo Friedberg	[19]
19	Zoubin Ghahramani	[19]
20	Gary Gilliland	[7]
21	Adam Godzik	[19]
22	Chittibabu Guda	[10] [15] [20]
23	Jim Hayes (James Hayes)	[16]
24	Seungwoo Hwang	[19]
25	Yuting Jia	[17]
26	Alexander E. Kel	[4]
27	Nikolay A. Kolchanov	[1] [4]
28	Werner G. Krebs	[19]
29	Wilfred W. Li	[8] [11] [16] [19]
30	Tong Liu	[19]
31	Sifang Lu	[15]
32	Luciano Milanesi	[1]
33	Mark A. Miller	[16]
34	Coleman Mosley	[16]
35	Lipika R. Pal	[20]
36	Dmitry Pekurovsky	[14] [16] [18]
37	Julia V. Ponomarenko	[12]
38	Calton Pu	[2] [3]
39	Greg B. Quinn	[16]
40	Boojala V. B. Reddy	[8] [11]
41	Vicente M. Reyes	[16]
42	Eric D. Scheeff	[10] [15]
43	Atif Shahab	[16]
44	Victor B. Strelets	[1]
45	John G. Tate	[11]
46	Oleg V. Vishnevsky	[4]
47	Helge Weissig	[7]
48	John D. Westbrook	[7] [19]
49	David L. Wild	[19]

Colors in the list of coauthors