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Jotun Hein

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2008
28EERune B. Lyngsø, Yun S. Song, Jotun Hein: Accurate Computation of Likelihoods in the Coalescent with Recombination Via Parsimony. RECOMB 2008: 463-477
27EERahul Satija, Lior Pachter, Jotun Hein: Combining statistical alignment and phylogenetic footprinting to detect regulatory elements. Bioinformatics 24(10): 1236-1242 (2008)
26EEÁdám Novák, István Miklós, Rune B. Lyngsø, Jotun Hein: StatAlign: an extendable software package for joint Bayesian estimation of alignments and evolutionary trees. Bioinformatics 24(20): 2403-2404 (2008)
2007
25EEStephen McCauley, Saskia de Groot, Thomas Mailund, Jotun Hein: Annotation of selection strengths in viral genomes. Bioinformatics 23(22): 2978-2986 (2007)
24EESaskia de Groot, Thomas Mailund, Jotun Hein: Comparative annotation of viral genomes with non-conserved gene structure. Bioinformatics 23(9): 1080-1089 (2007)
2006
23EEPaul Jenkins, Rune B. Lyngsø, Jotun Hein: How Many Transcripts Does It Take to Reconstruct the Splice Graph? WABI 2006: 103-114
22EEStephen McCauley, Jotun Hein: Using hidden Markov models and observed evolution to annotate viral genomes. Bioinformatics 22(11): 1308-1316 (2006)
21EEThomas Mailund, Mikkel H. Schierup, Christian N. S. Pedersen, Jesper N. Madsen, Jotun Hein, Leif Schauser: GeneRecon - a coalescent based tool for fine-scale association mapping. Bioinformatics 22(18): 2317-2318 (2006)
20EEYun S. Song, Rune B. Lyngsø, Jotun Hein: Counting All Possible Ancestral Configurations of Sample Sequences in Population Genetics. IEEE/ACM Trans. Comput. Biology Bioinform. 3(3): 239-251 (2006)
2005
19EERune B. Lyngsø, Yun S. Song, Jotun Hein: Minimum Recombination Histories by Branch and Bound. WABI 2005: 239-250
18EEGerton Lunter, István Miklós, Alexei Drummond, Jens Ledet Jensen, Jotun Hein: Bayesian coestimation of phylogeny and sequence alignment. BMC Bioinformatics 6: 83 (2005)
17EEIstván Miklós, Péter Ittzés, Jotun Hein: ParIS Genome Rearrangement server. Bioinformatics 21(6): 817-820 (2005)
16EEYun S. Song, Jotun Hein: Constructing Minimal Ancestral Recombination Graphs. Journal of Computational Biology 12(2): 147-169 (2005)
2004
15EEIstván Miklós, Jotun Hein: Genome Rearrangement in Mitochondria and Its Computational Biology. Comparative Genomics 2004: 85-96
14EEGerton Lunter, Jotun Hein: A nucleotide substitution model with nearest-neighbour interactions. ISMB/ECCB (Supplement of Bioinformatics) 2004: 216-223
2003
13EEGerton Lunter, István Miklós, Alexei Drummond, Jens Ledet Jensen, Jotun Hein: Bayesian Phylogenetic Inference under a Statistical Insertion-Deletion Model. WABI 2003: 228-244
12EEYun S. Song, Jotun Hein: Parsimonious Reconstruction of Sequence Evolution and Haplotype Blocks. WABI 2003: 287-302
11EEJakob Fredslund, Jotun Hein, Tejs Scharling: A Large Version of the Small Parsimony Problem. WABI 2003: 417-432
10 Jakob Skou Pedersen, Jotun Hein: Gene finding with a hidden Markov model of genome structure and evolution. Bioinformatics 19(2): 219-227 (2003)
9EEGerton Lunter, István Miklós, Yun S. Song, Jotun Hein: An Efficient Algorithm for Statistical Multiple Alignment on Arbitrary Phylogenetic Trees. Journal of Computational Biology 10(6): 869-889 (2003)
8 Bjarne Knudsen, Jotun Hein: Pfold: RNA secondary structure prediction using stochastic context-free grammars. Nucleic Acids Research 31(13): 3423-3428 (2003)
2001
7EEJotun Hein: An Algorithm for Statistical Alignment of Sequences Related by a Binary Tree. Pacific Symposium on Biocomputing 2001: 179-190
6EEMike A. Steel, Jotun Hein: Applying the Thorne-Kishino-Felsenstein model to sequence evolution on a star-shaped tree. Appl. Math. Lett. 14(6): 679-684 (2001)
1999
5 Bjarne Knudsen, Jotun Hein: RNA secondary structure prediction using stochastic context-free grammars and evolutionary history. Bioinformatics 15(6): 446-454 (1999)
1998
4 Christian N. S. Pedersen, Rune B. Lyngsø, Jotun Hein: Comparison of Coding DNA. CPM 1998: 153-173
1997
3 Alberto Apostolico, Jotun Hein: Combinatorial Pattern Matching, 8th Annual Symposium, CPM 97, Aarhus, Denmark, June 30 - July 2, 1997, Proceedings Springer 1997
1996
2EEJotun Hein, Tao Jiang, Lusheng Wang, Kaizhong Zhang: On the Complexity of Comparing Evolutionary Trees. Discrete Applied Mathematics 71(1-3): 153-169 (1996)
1995
1 Jotun Hein, Tao Jiang, Lusheng Wang, Kaizhong Zhang: On the Complexity of Comparing Evolutionary Trees (Extended Abstract). CPM 1995: 177-190

Coauthor Index

1Alberto Apostolico [3]
2Alexei Drummond [13] [18]
3Jakob Fredslund [11]
4Saskia de Groot [24] [25]
5Péter Ittzés [17]
6Paul Jenkins [23]
7Jens Ledet Jensen [13] [18]
8Tao Jiang [1] [2]
9Bjarne Knudsen [5] [8]
10Gerton Lunter [9] [13] [14] [18]
11Rune B. Lyngsø [4] [19] [20] [23] [26] [28]
12Jesper N. Madsen [21]
13Thomas Mailund [21] [24] [25]
14Stephen McCauley [22] [25]
15István Miklós [9] [13] [15] [17] [18] [26]
16Ádám Novák [26]
17Lior Pachter [27]
18Christian N. S. Pedersen [4] [21]
19Jakob Skou Pedersen [10]
20Rahul Satija [27]
21Tejs Scharling [11]
22Leif Schauser [21]
23Mikkel H. Schierup [21]
24Yun S. Song [9] [12] [16] [19] [20] [28]
25Mike A. Steel (Michael Anthony Steel) [6]
26Lusheng Wang [1] [2]
27Kaizhong Zhang [1] [2]

Colors in the list of coauthors

Copyright © Sun May 17 03:24:02 2009 by Michael Ley (ley@uni-trier.de)