2008 |
28 | EE | Rune B. Lyngsø,
Yun S. Song,
Jotun Hein:
Accurate Computation of Likelihoods in the Coalescent with Recombination Via Parsimony.
RECOMB 2008: 463-477 |
27 | EE | Rahul Satija,
Lior Pachter,
Jotun Hein:
Combining statistical alignment and phylogenetic footprinting to detect regulatory elements.
Bioinformatics 24(10): 1236-1242 (2008) |
26 | EE | Ádám Novák,
István Miklós,
Rune B. Lyngsø,
Jotun Hein:
StatAlign: an extendable software package for joint Bayesian estimation of alignments and evolutionary trees.
Bioinformatics 24(20): 2403-2404 (2008) |
2007 |
25 | EE | Stephen McCauley,
Saskia de Groot,
Thomas Mailund,
Jotun Hein:
Annotation of selection strengths in viral genomes.
Bioinformatics 23(22): 2978-2986 (2007) |
24 | EE | Saskia de Groot,
Thomas Mailund,
Jotun Hein:
Comparative annotation of viral genomes with non-conserved gene structure.
Bioinformatics 23(9): 1080-1089 (2007) |
2006 |
23 | EE | Paul Jenkins,
Rune B. Lyngsø,
Jotun Hein:
How Many Transcripts Does It Take to Reconstruct the Splice Graph?
WABI 2006: 103-114 |
22 | EE | Stephen McCauley,
Jotun Hein:
Using hidden Markov models and observed evolution to annotate viral genomes.
Bioinformatics 22(11): 1308-1316 (2006) |
21 | EE | Thomas Mailund,
Mikkel H. Schierup,
Christian N. S. Pedersen,
Jesper N. Madsen,
Jotun Hein,
Leif Schauser:
GeneRecon - a coalescent based tool for fine-scale association mapping.
Bioinformatics 22(18): 2317-2318 (2006) |
20 | EE | Yun S. Song,
Rune B. Lyngsø,
Jotun Hein:
Counting All Possible Ancestral Configurations of Sample Sequences in Population Genetics.
IEEE/ACM Trans. Comput. Biology Bioinform. 3(3): 239-251 (2006) |
2005 |
19 | EE | Rune B. Lyngsø,
Yun S. Song,
Jotun Hein:
Minimum Recombination Histories by Branch and Bound.
WABI 2005: 239-250 |
18 | EE | Gerton Lunter,
István Miklós,
Alexei Drummond,
Jens Ledet Jensen,
Jotun Hein:
Bayesian coestimation of phylogeny and sequence alignment.
BMC Bioinformatics 6: 83 (2005) |
17 | EE | István Miklós,
Péter Ittzés,
Jotun Hein:
ParIS Genome Rearrangement server.
Bioinformatics 21(6): 817-820 (2005) |
16 | EE | Yun S. Song,
Jotun Hein:
Constructing Minimal Ancestral Recombination Graphs.
Journal of Computational Biology 12(2): 147-169 (2005) |
2004 |
15 | EE | István Miklós,
Jotun Hein:
Genome Rearrangement in Mitochondria and Its Computational Biology.
Comparative Genomics 2004: 85-96 |
14 | EE | Gerton Lunter,
Jotun Hein:
A nucleotide substitution model with nearest-neighbour interactions.
ISMB/ECCB (Supplement of Bioinformatics) 2004: 216-223 |
2003 |
13 | EE | Gerton Lunter,
István Miklós,
Alexei Drummond,
Jens Ledet Jensen,
Jotun Hein:
Bayesian Phylogenetic Inference under a Statistical Insertion-Deletion Model.
WABI 2003: 228-244 |
12 | EE | Yun S. Song,
Jotun Hein:
Parsimonious Reconstruction of Sequence Evolution and Haplotype Blocks.
WABI 2003: 287-302 |
11 | EE | Jakob Fredslund,
Jotun Hein,
Tejs Scharling:
A Large Version of the Small Parsimony Problem.
WABI 2003: 417-432 |
10 | | Jakob Skou Pedersen,
Jotun Hein:
Gene finding with a hidden Markov model of genome structure and evolution.
Bioinformatics 19(2): 219-227 (2003) |
9 | EE | Gerton Lunter,
István Miklós,
Yun S. Song,
Jotun Hein:
An Efficient Algorithm for Statistical Multiple Alignment on Arbitrary Phylogenetic Trees.
Journal of Computational Biology 10(6): 869-889 (2003) |
8 | | Bjarne Knudsen,
Jotun Hein:
Pfold: RNA secondary structure prediction using stochastic context-free grammars.
Nucleic Acids Research 31(13): 3423-3428 (2003) |
2001 |
7 | EE | Jotun Hein:
An Algorithm for Statistical Alignment of Sequences Related by a Binary Tree.
Pacific Symposium on Biocomputing 2001: 179-190 |
6 | EE | Mike A. Steel,
Jotun Hein:
Applying the Thorne-Kishino-Felsenstein model to sequence evolution on a star-shaped tree.
Appl. Math. Lett. 14(6): 679-684 (2001) |
1999 |
5 | | Bjarne Knudsen,
Jotun Hein:
RNA secondary structure prediction using stochastic context-free grammars and evolutionary history.
Bioinformatics 15(6): 446-454 (1999) |
1998 |
4 | | Christian N. S. Pedersen,
Rune B. Lyngsø,
Jotun Hein:
Comparison of Coding DNA.
CPM 1998: 153-173 |
1997 |
3 | | Alberto Apostolico,
Jotun Hein:
Combinatorial Pattern Matching, 8th Annual Symposium, CPM 97, Aarhus, Denmark, June 30 - July 2, 1997, Proceedings
Springer 1997 |
1996 |
2 | EE | Jotun Hein,
Tao Jiang,
Lusheng Wang,
Kaizhong Zhang:
On the Complexity of Comparing Evolutionary Trees.
Discrete Applied Mathematics 71(1-3): 153-169 (1996) |
1995 |
1 | | Jotun Hein,
Tao Jiang,
Lusheng Wang,
Kaizhong Zhang:
On the Complexity of Comparing Evolutionary Trees (Extended Abstract).
CPM 1995: 177-190 |