Volume 11,
Number 1,
February 1995
Articles
- A. Julich:
Implementations of BLAST for parallel computers.
3-6 BibTeX
- S. M. Resenchuk, V. M. Blinov:
ALIGNMENT SERVICE: creation and processing of alignments of sequences of unlimited length.
7-11 BibTeX
- Makoto Hirosawa, Yasushi Totoki, Masaki Hoshida, Masato Ishikawa:
Comprehensive study on iterative algorithms of multiple sequence alignment.
13-18 BibTeX
- J. F. Wright, D. R. Morse, G. M. Tardivel:
An investigation into the use of hypertext as a user interface to taxonomic keys.
19-27 BibTeX
- E. Granjeon, Philippe Tarroux:
Detection of compositional constraints in nucleic acid sequences using neural networks.
29-37 BibTeX
- A. M. Eroshkin, V. I. Fomin, P. A. Zhilkin, V. V. Ivanisenko, Y. V. Kondrakhin:
PROANAL version 2: multifunctional program for analysis of multiple protein sequence alignments and for studying the structure--activity relationships in protein families.
39-44 BibTeX
- O. White, W. FitzHugh:
A rapid retrieval tool for operating on large, flat archive files.
45-47 BibTeX
- Hans L. Bodlaender, Rodney G. Downey, Michael R. Fellows, Michael T. Hallett, Harold T. Wareham:
Parameterized complexity analysis in computational biology.
49-57 BibTeX
- Marie-France Sagot, Alain Viari, Joël Pothier, Henry Soldano:
Finding flexible patterns in a text: an application to three-dimensional molecular matching.
59-70 BibTeX
- Dinesh Manocha, Yunshan Zhu, William V. Wright:
Conformational analysis of molecular chains using nano-kinematics.
71-86 BibTeX
- Bilha Sandak, Ruth Nussinov, Haim J. Wolfson:
An automated computer vision and robotics-based technique for 3-D flexible biomolecular docking and matching.
87-99 BibTeX
- J. Perochon-Dorisse, Farid Chetouani, S. Aurel, N. Iscolo, B. Michot:
RNA-d2: a computer program for editing and display of RNA secondary structures.
101-109 BibTeX
- M. Schoniger, Arndt von Haeseler:
Simulating efficiently the evolution of DNA sequences.
111-115 BibTeX
Volume 11,
Number 2,
April 1995
Articles
- Ying Xu, Richard J. Mural, Edward C. Uberbacher:
Correcting sequencing errors in DNA coding regions using a dynamic programming approach.
117-124 BibTeX
- K. Nakata:
Prediction of zinc finger DNA binding protein.
125-131 BibTeX
- M. Ligr, C. Ron, L. Natr:
Calculation of the photoperiod length.
133-139 BibTeX
- A. Perrakis, C. Constantinides, A. Athanasiades, Stavros J. Hamodrakas:
PBM: a software package to create, display and manipulate interactively models of small molecules and proteins on IBM-compatible PCs.
141-145 BibTeX
- Kun-Mao Chao, Jinghui Zhang, James Ostell, Webb Miller:
A local alignment tool for very long DNA sequences.
147-153 BibTeX
- G. D. Smith, K. E. Bernstein:
BULLET: a computer simulation of shotgun DNA sequencing.
155-157 BibTeX
- Hidemi Watanabe, Jinya Otsuka:
A comprehensive representation of extensive similarity linkage between large numbers of proteins.
159-166 BibTeX
- Carlo Nesti, Giorgio Poli, Milvia Chicca, Piera Ambrosino, Chiara Scapoli, Italo Barrai:
Phylogeny inferred from codon usage pattern in 31 organisms.
167-171 BibTeX
- E. Veklerov, C. H. Martin, E. H. Theil:
TRAMP: a software package for generating transposon maps.
173-179 BibTeX
- Julie Dawn Thompson:
Introducing variable gap penalties to sequence alignment in linear space.
181-186 BibTeX
- M. L. Metzker, K. M. Allain, Richard A. Gibbs:
Accurate determination of DNA in agarose gels using the novel algorithm GelScann(1.0).
187-194 BibTeX
- J. Mrazek, J. Kypr:
Middle-range clustering of nucleotides in genomes.
195-199 BibTeX
- M. Ehlde, G. Zacchi:
MIST: a user-friendly metabolic simulator.
201-207 BibTeX
- Juncai Ma, Satoru Miyazaki, Hideaki Sugawara:
A handy database for culture collections worldwide: CCINFO-PC.
209-212 BibTeX
- O. E. Belova, V. A. Likhoshvai, S. I. Bazhan, Vitaly A. Kulichkov:
A computer system for analysis and integrated description of regulation of the molecular-genetic system of interferon induction and action.
213-218 BibTeX
- Reinhard Doelz, F. Eggenberger:
A compression mechanism for sequence databases to improve the efficiency of conventional tools.
219-223 BibTeX
- Reinhard Doelz:
Optimal production of biological documentation: the JAM format.
224-226 BibTeX
Volume 11,
Number 3,
June 1995
Articles
- Richard M. Karp, Lee Aaron Newberg:
An algorithm for analysing probed partial digestion experiments.
229-235 BibTeX
- Sungwon Jung, Steve Perkins, Yang Zhong, Sakti Pramanik, John H. Beaman:
A new data model for biological classification.
237-246 BibTeX
- A. Purvis, Andrew Rambaut:
Comparative analysis by independent contrasts (CAIC): an Apple Macintosh application for analysing comparative data.
247-251 BibTeX
- Francesco Vivarelli, G. Giusti, M. Villani, Renato Campanini, Piero Fariselli, Mario Compiani, Rita Casadio:
LGANN: a parallel system combining a local genetic algorithm and neural networks for the prediction of secondary structure of proteins.
253-260 BibTeX
- H. Cantalloube, Gilles Labesse, Jacques Chomilier, C. Nahum, Y. Y. Cho, V. Chams, A. Achour, A. Lachgar, J. P. Mbika, W. Issing:
Automat and BLAST: comparison of two protein sequence similarity search programs.
261-272 BibTeX
- C. Fondrat, Philippe Dessen:
A rapid access motif database (RAMdb) with a search algorithm for the retrieval patterns in nucleic acids or protein databanks.
273-279 BibTeX
- M. Bansal, D. Bhattacharyya, B. Ravi:
NUPARM and NUCGEN: software for analysis and generation of sequence dependent nucleic acid structures.
281-287 BibTeX
- M. Bansal, D. Bhattacharyya, S. Vijaylakshmi:
NUVIEW: software for display and interactive manipulation of nucleic acid models.
289-292 BibTeX
- T. M. Nair, Sanjeev S. Tambe, Bhaskar D. Kulkarni:
Analysis of transcription control signals using artificial neural networks.
293-300 BibTeX
- Oswaldo Trelles-Salazar, Emilio L. Zapata, Joaquín Dopazo, A. F. Coulson, José María Carazo:
An image-processing approach to dotplots: an X-Window-based program for interactive analysis of dotplots derived from sequence and structural data.
301-308 BibTeX
- Martin Reczko, Artemis G. Hatzigeorgiou, Niels Mache, Andreas Zell, Sándor Suhai:
A parallel neural network simulator on the connection machine CM-5.
309-315 BibTeX
- Gautam B. Singh, Stephen A. Krawetz:
DNAView: a quality assessment tool for the visualization of large sequenced regions.
317-319 BibTeX
- Jean Thioulouse, J. R. Lobry:
Co-inertia analysis of amino-acid physico-chemical properties and protein composition with the ADE package.
321-329 BibTeX
- Andrey A. Mironov, N. N. Alexandrov, N. Yu. Bogodarova, A. Grigorjev, V. F. Lebedev, L. V. Lunovskaya, M. E. Truchan, Pavel A. Pevzner:
DNASUN: a package of computer programs for the biotechnology laboratory.
331-335 BibTeX
Volume 11,
Number 4,
August 1995
Articles
- S. Schweigert, P. V. Herde, Peter R. Sibbald:
Issues in incorporation semantic integrity in molecular biological object-oriented databases.
339-347 BibTeX
- Khawaja Sirajuddin, Tomomasa Nagashima, Koichi Ono:
A new algorithm for predicting splice site sequence based on an improvement of categorical discriminant analysis.
349-359 BibTeX
- S. W. Humphries, S. P. Long:
WIMOVAC: a software package for modelling the dynamics of plant leaf and canopy photosynthesis.
361-371 BibTeX
- Salvatore Lanzavecchia, L. Tosoni, Pier Luigi Bellon:
Three-dimensional reconstruction of helical structures with fast inversion of very large Fourier transforms.
373-378 BibTeX
- Y. M. Fraenkel, Y. Mandel, D. Friedberg, Hanah Margalit:
Identification of common motifs in unaligned DNA sequences: application to Escherichia coli Lrp regulon.
379-387 BibTeX
- A. M. Chen, J. N. Lucas, F. S. Hill, David J. Brenner, Rainer K. Sachs:
Chromosome aberrations produced by ionizing radiation: Monte Carlo simulations and chromosome painting data.
389-397 BibTeX
- Hiroshi Mamitsuka, Kenji Yamanishi:
alpha-Helix region prediction with stochastic rule learning.
399-411 BibTeX
- Hiroshi Mamitsuka:
Representing inter-residue dependencies in protein sequences with probabilistic networks.
413-422 BibTeX
- N. N. Nazipova, Svetlana A. Shabalina, Aleksey Y. Ogurtsov, Alexey S. Kondrashov, Mikhail A. Roytberg, G. V. Buryakov, S. E. Vernoslov:
SAMSON: a software package for the biopolymer primary structure analysis.
423-426 BibTeX
- Jorge Fernandez-de-Cossio, J. Gonzalez, Vladimir Besada:
A computer program to aid the sequencing of peptides in collision- activated decomposition experiments.
427-434 BibTeX
- S. Deret, C. Maissiat, P. Aucouturier, Jacques Chomilier:
SUBIM: a program for analysing the Kabat database and determining the variability subgroup of a new immunoglobulin sequence.
435-439 BibTeX
- M. G. Claros:
MitoProt, a Macintosh application for studying mitochondrial proteins.
441-447 BibTeX
- Jürgen Kleffe, Klaus Hermann, W. Gunia, W. Vahrson, Burghardt Wittig:
DNASTAT: a Pascal unit for the statistical analysis of DNA and protein sequences.
449-455 BibTeX
- Olga D. Ermolaeva, M. C. Wagner:
SUBTRACT: a computer program for modeling the process of subtractive hydridization.
457-462 BibTeX
Volume 11,
Number 5,
October 1995
Articles
- M. E. Drets, G. A. Drets, P. J. Queirolo, F. J. Monteverde:
Computer graphics as a tool in cytogenetic research and education.
463-468 BibTeX
- F. Fournet, F. Hospital, J. M. Elsen:
A FORTRAN program to simulate the evolution of genetic variability in a small population.
469-475 BibTeX
- Y. V. Kondrakhin, Alexander E. Kel, Nikolay A. Kolchanov, Aida G. Romashchenko, Luciano Milanesi:
Eukaryotic promoter recognition by binding sites for transcription factors.
477-488 BibTeX
- Stéphane Audic, G. Zanetti:
Automatic reading of hybridization filter images.
489-495 BibTeX
- Y. Cai, C. Chen:
Artificial neural network method for discriminating coding regions of eukaryotic genes.
497-501 BibTeX
- P. M. Leong, S. Morgenthaler:
Random walk and gap plots of DNA sequences.
503-507 BibTeX
- Arlin Stoltzfus, D. F. Spencer, W. F. Doolittle:
Methods for evaluating exon-protein correspondences.
509-515 BibTeX
- Wolfgang Wiechert, B. Joksch, R. Wittig, A. Hartbrich, T. Höner, M. Möllney:
Object-oriented programming for the biosciences.
517-534 BibTeX
- G. F. Weiller, A. Gibbs:
DIPLOMO: the tool for a new type of evolutionary analysis.
535-540 BibTeX
- Mikhail S. Gelfand:
FANS-REF: a bibliography on statistics and functional analysis of nucleotide sequences.
541 BibTeX
- Osamu Gotoh:
A weighting system and algorithm for aligning many phylogenetically related sequences.
543-551 BibTeX
- P. Nitschke, I. Pignot-Paintrand, F. Iftode, H. Delacroix:
DEFPARAM: a program package for aligning elliptical sections of biological objects containing an n-fold symmetry.
553-556 BibTeX
- Victor B. Strelets, Hwa A. Lim:
Compression of protein sequence databases.
557-56 BibTeX
- Q. K. Chen, G. Z. Hertz, Gary D. Stormo:
MATRIX SEARCH 1.0: a computer program that scans DNA sequences for transcriptional elements using a database of weight matrices.
563-566 BibTeX
- Dónall A. Mac Dónaill:
On the application of integer arithmetic in nucleotide sequence analysis.
567-569 BibTeX
- Roger A. Sayle, Mansoor A. S. Saqi, M. Weir, Andrew Lyall:
PdbAlign, PdbDist and DistAlign: tools to aid in relating sequence variability to structure.
571-573 BibTeX
Volume 11,
Number 6,
December 1995
Articles
- D. Bordo:
Comparison of side chain interactions performed by structurally equivalent residues in homologous protein structures.
577-581 BibTeX
- Andrey A. Ptitsyn, Dmitry A. Grigorovich:
Object-oriented data handler for sequence analysis software development.
583-589 BibTeX
- S. Sudarsanam, S. Srinivasan:
Searching for protein loops in parallel.
591-593 BibTeX
- D. J. Brown:
A qualitative ecological model to support mariculture pond water quality management.
595-602 BibTeX
- J. D. Parsons:
Improved tools for DNA comparison and clustering.
603-613 BibTeX
- J. D. Parsons:
Miropeats: graphical DNA sequence comparisons.
615-619 BibTeX
- Julio Rozas, Ricardo Rozas:
DnaSP, DNA sequence polymorphism: an interactive program for estimating population genetics parameters from DNA sequence data.
621-625 BibTeX
- D. S. Tuckwell, M. J. Humphries, Andy Brass:
Protein secondary structure prediction by the analysis of variation and conservation in multiple alignments.
627-632 BibTeX
- Mark Gerstein, Russ B. Altman:
Using a measure of structural variation to define a core for the globins.
633-644 BibTeX
- Carol Soderlund, I. Dunham:
SAM: a system for iteratively building marker maps.
645-655 BibTeX
- Pascal R. R. Courtois, Maurice L. J. Moncany:
A probabilistic algorithm for interactive huge genome comparison.
657-665 BibTeX
- Richard Blevins, Jeffery S. Aaronson, J. Myerson, G. Hamm, K. O. Elliston:
PROFILER: a tool for automatic searching of internally maintained databases.
667-673 BibTeX
- D. L. Hoffman, S. Laiter, Raj K. Singh, Iosif I. Vaisman, Alexander Tropsha:
Rapid protein structure classification using one-dimensional structure profiles on the bioSCAN parallel computer.
675-679 BibTeX
- Christophe Geourjon, Gilbert Deléage:
SOPMA: significant improvements in protein secondary structure prediction by consensus prediction from multiple alignments.
681-684 BibTeX
- A. Nakaya, K. Yamamoto, Akinori Yonezawa:
RNA secondary structure prediction using highly parallel computers.
685-692 BibTeX
Copyright © Sat May 16 23:51:26 2009
by Michael Ley (ley@uni-trier.de)
