Edward C. Uberbacher

2003
24	EE	Marvin Frazier, David Thomassen, Aristides Patrinos, Gary Johnson, Carl Edward Oliver, Edward C. Uberbacher: Stepping Up the Pace of Discovery: the Genomes to Life Program. CSB 2003: 2-9
23	EE	Edward C. Uberbacher, David Thomassen, Aristides Patrinos, Gary Johnson, Carl Edward Oliver, Marvin Frazier: Computing for the DOE Genomes to Life Program. CSB 2003: 32
22	EE	Jane Razumovskaya, Victor Olman, Dong Xu, Edward C. Uberbacher, Nathan Verberkmoes, Ying Xu: A Computational Method for Assessing Peptide-Identification Reliability in Tandem Mass Spectrometry Analysis with SEQUEST. CSB 2003: 421-423
21		Chandrasegaran Narasimhan, Philip F. LoCascio, Edward C. Uberbacher: Background rareness-based iterative multiple sequence alignment algorithm for regulatory element detection. Bioinformatics 19(15): 1952-1963 (2003)
2000
20		Dong Xu, Michael A. Unseren, Ying Xu, Edward C. Uberbacher: Sequence-structure specificity of a knowledge based energy function at the secondary structure level. Bioinformatics 16(3): 269-285 (2000)
1998
19	EE	Ying Xu, Dong Xu, Edward C. Uberbacher: A new method for modeling and solving the protein fold recognition problem (extended abstract). RECOMB 1998: 285-292
18		Ying Xu, Dong Xu, Edward C. Uberbacher: An Efficient Computational Method for Globally Optimal Threading. Journal of Computational Biology 5(3): 597- (1998)
17	EE	Ying Xu, Victor Olman, Edward C. Uberbacher: A segmentation algorithm for noisy images: Design and evaluation. Pattern Recognition Letters 19(13): 1213-1224 (1998)
1997
16		Ying Xu, Richard J. Mural, Edward C. Uberbacher: Inferring Gene Structures in Genomic Sequences Using Pattern Recognition and Expressed Sequence Tags. ISMB 1997: 344-353
15	EE	Ying Xu, Edward C. Uberbacher: Reference-based gene model prediction on DNA contigs (extended abstract). RECOMB 1997: 330-336
14	EE	Ying Xu, Edward C. Uberbacher: 2D image segmentation using minimum spanning trees. Image Vision Comput. 15(1): 47-57 (1997)
13		Ying Xu, Edward C. Uberbacher: Automated Gene Identification in Large-Scale Genomic Sequences. Journal of Computational Biology 4(3): 325-338 (1997)
1996
12		Ying Xu, Edward C. Uberbacher: Gene Prediction by Pattern Recognition and Homology Search. ISMB 1996: 241-251
11		Xiaojun Guan, Edward C. Uberbacher: Alignments of DNA and protein sequences containing frameshift errors. Computer Applications in the Biosciences 12(1): 31-40 (1996)
10		Ying Xu, Edward C. Uberbacher: A polynomial-time algorithm for a class of protein threading problems. Computer Applications in the Biosciences 12(6): 511-517 (1996)
9	EE	Sherri Matis, Ying Xu, Manesh J. Shah, Xiaojun Guan, J. Ralph Einstein, Richard J. Mural, Edward C. Uberbacher: Detection of RNA Polymerase II Promoters and Polyadenylation Sites in Human DNA Sequence. Computers & Chemistry 20(1): 135-140 (1996)
8		Ying Xu, Richard J. Mural, Edward C. Uberbacher: An Iterative Algorithm for Correcting Sequencing Errors in DNA Coding Regions. Journal of Computational Biology 3(3): 333-344 (1996)
1995
7	EE	Sherri Matis, Howard Doyle, Ignazio Marino, Richard J. Mural, Edward C. Uberbacher: Use of Neural Networks for Prediction of Graft Failure following Liver Transplantation. CBMS 1995: 133-
6	EE	Xiaojun Guan, Richard J. Mural, Edward C. Uberbacher: Sequence comparison on a cluster of workstations using the PVM system. IPPS 1995: 190-195
5		Mark Craven, Richard J. Mural, Loren J. Hauser, Edward C. Uberbacher: Predicting Protein Folding Classes without Overly Relying on Homology. ISMB 1995: 98-106
4		Ying Xu, Richard J. Mural, Edward C. Uberbacher: Correcting sequencing errors in DNA coding regions using a dynamic programming approach. Computer Applications in the Biosciences 11(2): 117-124 (1995)
1994
3		Yin Xu, J. Ralph Einstein, Richard J. Mural, Manesh J. Shah, Edward C. Uberbacher: An Improved System for Exon Recognition and Gene Modeling in Human DNA Sequence. ISMB 1994: 376-
2		Ying Xu, Richard J. Mural, Edward C. Uberbacher: Constructing gene models from accurately predicted exons: an application of dynamic programming. Computer Applications in the Biosciences 10(6): 613-623 (1994)
1991
1		Xiaojun Guan, Richard J. Mural, Reinhold Mann, Edward C. Uberbacher: On Parallel Search of DNA Sequence Databases. PPSC 1991: 332-337

Coauthor Index

1	Mark Craven	[5]
2	Howard Doyle	[7]
3	J. Ralph Einstein	[3] [9]
4	Marvin Frazier	[23] [24]
5	Xiaojun Guan	[1] [6] [9] [11]
6	Loren J. Hauser	[5]
7	Gary Johnson	[23] [24]
8	Philip F. LoCascio	[21]
9	Reinhold Mann	[1]
10	Ignazio Marino	[7]
11	Sherri Matis	[7] [9]
12	Richard J. Mural	[1] [2] [3] [4] [5] [6] [7] [8] [9] [16]
13	Chandrasegaran Narasimhan	[21]
14	Carl Edward Oliver	[23] [24]
15	Victor Olman	[17] [22]
16	Aristides Patrinos	[23] [24]
17	Jane Razumovskaya	[22]
18	Manesh J. Shah	[3] [9]
19	David Thomassen	[23] [24]
20	Michael A. Unseren	[20]
21	Nathan Verberkmoes	[22]
22	Dong Xu	[18] [19] [20] [22]
23	Yin Xu	[3]
24	Ying Xu	[2] [4] [8] [9] [10] [12] [13] [14] [15] [16] [17] [18] [19] [20] [22]

Colors in the list of coauthors