Luciano Milanesi

2008
37	EE	Richard C. van der Wath, Elizabeth van der Wath, Antonio Carapelli, Francesco Nardi, Francesco Frati, Luciano Milanesi, Pietro Liò: Bayesian Phylogeny on Grid. BIRD 2008: 404-416
36	EE	Antonella Galizia, Federica Viti, Alessandro Orro, Daniele D'Agostino, Ivan Merelli, Luciano Milanesi, Andrea Clematis: TMAinspect, an EGEE Framework for Tissue MicroArray Image Handling. CCGRID 2008: 741-746
35	EE	Antonella Galizia, Daniele D'Agostino, Andrea Clematis, Federica Viti, Alessandro Orro, Ivan Merelli, Luciano Milanesi: Enabling Parallel TMA Image Analysis in a Grid Environment. CISIS 2008: 394-399
34	EE	Daniele D'Agostino, Andrea Clematis, Ivan Merelli, Luciano Milanesi, Matteo Coloberti: A Grid Service based Parallel Molecular Surface Reconstruction System. PDP 2008: 455-462
33	EE	Ivan Merelli, Alessandro Orro, Daniele D'Agostino, Andrea Clematis, Luciano Milanesi: A parallel protein surface reconstruction system. IJBRA 4(3): 221-239 (2008)
32	EE	Chanchal K. Mitra, Luciano Milanesi: An Unusal Distribution of 6-nt Sequences Near The Transcription Start Site. J. Integrative Bioinformatics 5(2): (2008)
31	EE	Roberta Alfieri, Ivan Merelli, Ettore Mosca, Luciano Milanesi: The cell cycle DB: a systems biology approach to cell cycle analysis. Nucleic Acids Research 36(Database-Issue): 641-645 (2008)
2007
30		Antonella Galizia, Federica Viti, Daniele D'Agostino, Ivan Merelli, Luciano Milanesi, Andrea Clematis: Experimenting Grid Protocols to Improve Privacy Preservation in Efficient Distributed Image Processing. PARCO 2007: 139-146
29		Daniele D'Agostino, Ivan Merelli, Andrea Clematis, Luciano Milanesi, Alessandro Orro: A Parallel Workflow for the Reconstruction of Molecular Surfaces. PARCO 2007: 147-154
28	EE	Emanuela Merelli, Giuliano Armano, Nicola Cannata, Flavio Corradini, Mark d'Inverno, Andreas Doms, Phillip W. Lord, Andrew Martin, Luciano Milanesi, Steffen Möller, Michael Schroeder, Michael Luck: Agents in bioinformatics, computational and systems biology. Briefings in Bioinformatics 8(1): 45-59 (2007)
27	EE	Daniel Remondini, Nicola Neretti, Claudio Franceschi, Paolo Tieri, John M. Sedivy, Luciano Milanesi, Gastone C. Castellani: Networks from Gene Expression Time Series: Characterization of Correlation Patterns. I. J. Bifurcation and Chaos 17(7): 2477-2483 (2007)
26	EE	Jean-Yves Bansard, Dietrich Rebholz-Schuhmann, Graham Cameron, Dominic Clark, Erik M. van Mulligen, Francesco Beltrame, Eva del Hoyo-Barbolla, Fernando Martín-Sánchez, Luciano Milanesi, Ioannis G. Tollis, Johan van der Lei, Jean-Louis Coatrieux: Medical Informatics and Bioinformatics: A Bibliometric Study. IEEE Transactions on Information Technology in Biomedicine 11(3): 237-243 (2007)
25	EE	Fedor Kolpakov, Vladimir Poroikov, Ruslan N. Sharipov, Yury Kondrakhin, Alexey Zakharov, Alexey Lagunin, Luciano Milanesi, Alexander E. Kel: CYCLONET - an integrated database on cell cycle regulation and carcinogenesis. Nucleic Acids Research 35(Database-Issue): 550-556 (2007)
2006
24	EE	Nicolas Jacq, Vincent Breton, Hsin-Yen Chen, Li-Yung Ho, Martin Hofmann, Hurng-Chun Lee, Yannick Legré, Simon C. Lin, Astrid Maaß, Emmanuel Medernach, Ivan Merelli, Luciano Milanesi, Giulio Rastelli, Matthieu Reichstadt, Jean Salzemann, Horst Schwichtenberg, Mahendrakar Sridhar, Vinod Kasam, Ying-Ta Wu, Marc Zimmermann: Grid-Enabled High Throughput Virtual Screening. GCCB 2006: 45-59
23	EE	Nicolas Jacq, Vincent Breton, Hsin-Yen Chen, Li-Yung Ho, Martin Hofmann, Hurng-Chun Lee, Yannick Legré, Simon C. Lin, Astrid Maaß, Emmanuel Medernach, Ivan Merelli, Luciano Milanesi, Giulio Rastelli, Matthieu Reichstadt, Jean Salzemann, Horst Schwichtenberg, Mahendrakar Sridhar, Vinod Kasam, Ying-Ta Wu, Marc Zimmermann: Large Scale In Silico Screening on Grid Infrastructures CoRR abs/cs/0611084: (2006)
22		Alessandro Orro, Luciano Milanesi: An Agent System for Automatic Workflows Composition in Grid Environments. ITSSA 1(1): 59-66 (2006)
21	EE	P. Romano, G. Bertolini, Flavio De Paoli, M. Fattore, Domenico Marra, Giancarlo Mauri, Emanuela Merelli, Ivan Porro, Silvia Scaglione, Luciano Milanesi: Network integration of data and analysis of oncology interest. J. Integrative Bioinformatics 3(1): (2006)
20	EE	G. A. Trombetti, Ivan Merelli, Luciano Milanesi: High performance cDNA sequence analysis using grid technology. J. Parallel Distrib. Comput. 66(12): 1482-1488 (2006)
2005
19	EE	Ivan Merelli, Luciano Milanesi, Daniele D'Agostino, Andrea Clematis, Marco Vanneschi, Marco Danelutto: Using Parallel Isosurface Extraction in Superficial Molecular Modeling. DFMA 2005: 288-294
18	EE	Igor B. Rogozin, B. A. Malyarchuk, Youri I. Pavlov, Luciano Milanesi: From Context-Dependence of Mutations to Molecular Mechanisms of Mutagenesis. Pacific Symposium on Biocomputing 2005
17	EE	Giuliano Armano, Luciano Milanesi, Alessandro Orro: Using Secondary Structure Information to Perform Multiple Alignment. T. Comp. Sys. Biology: 78-88 (2005)
2003
16		Igor B. Rogozin, Vladimir N. Babenko, Luciano Milanesi, Youri I. Pavlov: Computational analysis of mutation spectra. Briefings in Bioinformatics 4(3): 210-227 (2003)
2002
15		Vadim P. Valuev, Dmitry A. Afonnikov, Mikhail P. Ponomarenko, Luciano Milanesi, Nikolay A. Kolchanov: ASPD (Artificially Selected Proteins/Peptides Database): a database of proteins and peptides evolved in vitro. Nucleic Acids Research 30(1): 200-202 (2002)
2001
14		Igor B. Rogozin, Alexey V. Kochetov, Fyodor A. Kondrashov, Eugene V. Koonin, Luciano Milanesi: Presence of ATG triplets in 5' untranslated regions of eukaryotic cDNAs correlates with a `weak' context of the start codon. Bioinformatics 17(10): 890-900 (2001)
2000
13		Igor B. Rogozin, V. I. Mayorov, M. V. Lavrentieva, Luciano Milanesi, L. R. Adkison: Prediction and Phylogenetic Analysis of Mammalian Short Interspersed Elements (SINEs). Briefings in Bioinformatics 1(3): 260-274 (2000)
1999
12		Luciano Milanesi, D. D'Angelo, Igor B. Rogozin: GeneBuilder: interactive in silico prediction of gene structure. Bioinformatics 15(7): 612-621 (1999)
11		Nikolay A. Kolchanov, Mikhail P. Ponomarenko, Anatoly S. Frolov, Elena A. Ananko, F. A. Kolpakov, Elena V. Ignatieva, Olga A. Podkolodnaya, T. N. Goryachkovskaya, Irina L. Stepanenko, Tatyana I. Merkulova, V. V. Babenko, Y. V. Ponomarenko, Alexey V. Kochetov, Nikolay L. Podkolodny, Denis G. Vorobiev, Sergey V. Lavryushev, Dmitry A. Grigorovich, Y. V. Kondrakhin, Luciano Milanesi, Edgar Wingender, Victor V. Solovyev, G. Christian Overton: Integrated databases and computer systems for studying eukaryotic gene expression. Bioinformatics 15(7): 669-686 (1999)
1998
10		Nikolay A. Kolchanov, Mikhail P. Ponomarenko, Alexander E. Kel, Y. V. Kondrakhin, Anatoly S. Frolov, F. A. Kolpakov, T. N. Goryachkovskaya, O. V. Kel, Elena A. Ananko, Elena V. Ignatieva, Olga A. Podkolodnaya, Vladimir N. Babenko, Irina L. Stepanenko, Aida G. Romashchenko, Tatyana I. Merkulova, Denis G. Vorobiev, Sergey V. Lavryushev, Y. V. Ponomarenko, Alexey V. Kochetov, G. B. Kolesov, Victor V. Solovyev, Luciano Milanesi, Nikolay L. Podkolodny, Edgar Wingender, T. Heinemeyer: GenExpress: A Computer System for Description, Analysis and Recognition of Regulatory Sequences in Eukaryotic Genome. ISMB 1998: 95-104
9		Maria Giuseppina Campi, Paolo Romano, Luciano Milanesi, Domenico Marra, Maria Assunta Manniello, Beatrice Iannotta, Gabriella Rondanina, Elena Grasso, Tiziana Ruzzon, Leonardo Santi: Molecular Probe Data Base (MPDB). Nucleic Acids Research 26(1): 145-147 (1998)
1996
8		Y. V. Kondrakhin, F. A. Kolpakov, Alexander E. Kel, Nikolay A. Kolchanov, Luciano Milanesi: Computer Analysis and Recognition of the Transcription Regulatory Elements in Eukaryotic Genomes. German Conference on Bioinformatics 1996: 247-250
7		Igor B. Rogozin, Luciano Milanesi, Nikolay A. Kolchanov: Gene structure prediction using information on homologous protein sequence. Computer Applications in the Biosciences 12(3): 161-170 (1996)
6		Luciano Milanesi, M. Muselli, P. Arrigo: Hamming-Clustering method for signals prediction in 5' and 3' regions of eukaryotic genes. Computer Applications in the Biosciences 12(5): 399-404 (1996)
1995
5		Alexander E. Kel, Y. V. Kondrakhin, Ph. A. Kolpakov, O. V. Kel, Aida G. Romashchenko, Edgar Wingender, Luciano Milanesi, Nikolay A. Kolchanov: Computer Tool FUNSITE for Analysis of Eukaryotic Regulatory Genomic Sequences. ISMB 1995: 197-205
4		Y. V. Kondrakhin, Alexander E. Kel, Nikolay A. Kolchanov, Aida G. Romashchenko, Luciano Milanesi: Eukaryotic promoter recognition by binding sites for transcription factors. Computer Applications in the Biosciences 11(5): 477-488 (1995)
1994
3		Victor B. Strelets, Andrey A. Ptitsyn, Luciano Milanesi, Hwa A. Lim: Data bank homology search algorithm with linear computation complexity. Computer Applications in the Biosciences 10(3): 319-322 (1994)
1993
2		Alexander E. Kel, Mikhail P. Ponomarenko, E. A. Likhachev, Yuri L. Orlov, I. V. Ischenko, Luciano Milanesi, Nikolay A. Kolchanov: SITEVIDEO: a computer system for functional site analysis and recognition. Investigation of the human splice sites. Computer Applications in the Biosciences 9(6): 617-627 (1993)
1992
1		Victor B. Strelets, Ilya N. Shindyalov, Nikolay A. Kolchanov, Luciano Milanesi: Fast, statistically based alignment of amino acid sequences on the base of diagonal fragments of DOT-matrices. Computer Applications in the Biosciences 8(6): 529-534 (1992)

Coauthor Index

1	L. R. Adkison	[13]
2	Dmitry A. Afonnikov	[15]
3	Roberta Alfieri	[31]
4	Elena A. Ananko	[10] [11]
5	Giuliano Armano	[17] [28]
6	P. Arrigo	[6]
7	V. V. Babenko	[11]
8	Vladimir N. Babenko	[10] [16]
9	Jean-Yves Bansard	[26]
10	Francesco Beltrame	[26]
11	G. Bertolini	[21]
12	Vincent Breton	[23] [24]
13	Graham Cameron	[26]
14	Maria Giuseppina Campi	[9]
15	Nicola Cannata	[28]
16	Antonio Carapelli	[37]
17	Gastone C. Castellani	[27]
18	Hsin-Yen Chen	[23] [24]
19	Dominic Clark	[26]
20	Andrea Clematis	[19] [29] [30] [33] [34] [35] [36]
21	Jean-Louis Coatrieux	[26]
22	Matteo Coloberti	[34]
23	Flavio Corradini	[28]
24	Daniele D'Agostino	[19] [29] [30] [33] [34] [35] [36]
25	D. D'Angelo	[12]
26	Marco Danelutto	[19]
27	Andreas Doms	[28]
28	M. Fattore	[21]
29	Claudio Franceschi	[27]
30	Francesco Frati	[37]
31	Anatoly S. Frolov	[10] [11]
32	Antonella Galizia	[30] [35] [36]
33	T. N. Goryachkovskaya	[10] [11]
34	Elena Grasso	[9]
35	Dmitry A. Grigorovich	[11]
36	T. Heinemeyer	[10]
37	Li-Yung Ho	[23] [24]
38	Martin Hofmann	[23] [24]
39	Eva del Hoyo-Barbolla	[26]
40	Beatrice Iannotta	[9]
41	Elena V. Ignatieva	[10] [11]
42	I. V. Ischenko	[2]
43	Nicolas Jacq	[23] [24]
44	Vinod Kasam	[23] [24]
45	Alexander E. Kel	[2] [4] [5] [8] [10] [25]
46	O. V. Kel	[5] [10]
47	Alexey V. Kochetov	[10] [11] [14]
48	Nikolay A. Kolchanov	[1] [2] [4] [5] [7] [8] [10] [11] [15]
49	G. B. Kolesov	[10]
50	F. A. Kolpakov	[8] [10] [11]
51	Fedor Kolpakov	[25]
52	Ph. A. Kolpakov	[5]
53	Y. V. Kondrakhin	[4] [5] [8] [10] [11]
54	Yury Kondrakhin	[25]
55	Fyodor A. Kondrashov	[14]
56	Eugene V. Koonin	[14]
57	Alexey Lagunin	[25]
58	M. V. Lavrentieva	[13]
59	Sergey V. Lavryushev	[10] [11]
60	Hurng-Chun Lee	[23] [24]
61	Yannick Legré	[23] [24]
62	Johan van der Lei	[26]
63	E. A. Likhachev	[2]
64	Hwa A. Lim	[3]
65	Simon C. Lin	[23] [24]
66	Pietro Liò	[37]
67	Phillip W. Lord	[28]
68	Michael Luck	[28]
69	Astrid Maaß	[23] [24]
70	B. A. Malyarchuk	[18]
71	Maria Assunta Manniello	[9]
72	Domenico Marra	[9] [21]
73	Andrew Martin	[28]
74	Fernando Martín-Sánchez	[26]
75	Giancarlo Mauri	[21]
76	V. I. Mayorov	[13]
77	Emmanuel Medernach	[23] [24]
78	Emanuela Merelli	[21] [28]
79	Ivan Merelli	[19] [20] [23] [24] [29] [30] [31] [33] [34] [35] [36]
80	Tatyana I. Merkulova	[10] [11]
81	Chanchal K. Mitra	[32]
82	Steffen Möller	[28]
83	Ettore Mosca	[31]
84	Erik M. van Mulligen	[26]
85	M. Muselli	[6]
86	Francesco Nardi	[37]
87	Nicola Neretti	[27]
88	Yuri L. Orlov	[2]
89	Alessandro Orro	[17] [22] [29] [33] [35] [36]
90	G. Christian Overton	[11]
91	Flavio De Paoli	[21]
92	Youri I. Pavlov	[16] [18]
93	Olga A. Podkolodnaya	[10] [11]
94	Nikolay L. Podkolodny	[10] [11]
95	Mikhail P. Ponomarenko	[2] [10] [11] [15]
96	Y. V. Ponomarenko	[10] [11]
97	Vladimir Poroikov	[25]
98	Ivan Porro	[21]
99	Andrey A. Ptitsyn	[3]
100	Giulio Rastelli	[23] [24]
101	Dietrich Rebholz-Schuhmann	[26]
102	Matthieu Reichstadt	[23] [24]
103	Daniel Remondini	[27]
104	Igor B. Rogozin	[7] [12] [13] [14] [16] [18]
105	P. Romano	[21]
106	Paolo Romano	[9]
107	Aida G. Romashchenko	[4] [5] [10]
108	Gabriella Rondanina	[9]
109	Tiziana Ruzzon	[9]
110	Jean Salzemann	[23] [24]
111	Leonardo Santi	[9]
112	Silvia Scaglione	[21]
113	Michael Schroeder	[28]
114	Horst Schwichtenberg	[23] [24]
115	John M. Sedivy	[27]
116	Ruslan N. Sharipov (Ruslan Sharipov Nilyevich)	[25]
117	Ilya N. Shindyalov	[1]
118	Victor V. Solovyev	[10] [11]
119	Mahendrakar Sridhar	[23] [24]
120	Irina L. Stepanenko	[10] [11]
121	Victor B. Strelets	[1] [3]
122	Paolo Tieri	[27]
123	Ioannis G. Tollis	[26]
124	G. A. Trombetti	[20]
125	Vadim P. Valuev	[15]
126	Marco Vanneschi	[19]
127	Federica Viti	[30] [35] [36]
128	Denis G. Vorobiev	[10] [11]
129	Elizabeth van der Wath	[37]
130	Richard C. van der Wath	[37]
131	Edgar Wingender	[5] [10] [11]
132	Ying-Ta Wu	[23] [24]
133	Alexey Zakharov	[25]
134	Marc Zimmermann	[23] [24]
135	Mark d'Inverno	[28]

Colors in the list of coauthors