| 2008 |
|---|
| 52 | EE | Laura Fernandez-de-Manuel,
María J. Ledesma-Carbayo,
Julian Atienza-Herrero,
Carlos Oscar Sánchez Sorzano,
José María Carazo,
Andrés Santos:
Flexible image registration for the identification of best fitted protein models in 3D-EM maps.
ISBI 2008: 983-986 |
| 51 | EE | Federico Abascal,
Pedro Carmona-Saez,
José María Carazo,
Alberto D. Pascual-Montano:
ChIPCodis: mining complex regulatory systems in yeast by concurrent enrichment analysis of chip-on-chip data.
Bioinformatics 24(9): 1208-1209 (2008) |
| 50 | EE | Carlos Oscar Sánchez Sorzano,
Javier A. Velázquez-Muriel,
Roberto Marabini,
Gabor T. Herman,
José María Carazo:
Volumetric restrictions in single particle 3DEM reconstruction.
Pattern Recognition 41(2): 616-626 (2008) |
| 2007 |
|---|
| 49 | EE | José-Jesús Fernández,
Inmaculada García,
José María Carazo,
Roberto Marabini:
Electron tomography of complex biological specimens on the Grid.
Future Generation Comp. Syst. 23(3): 435-446 (2007) |
| 48 | EE | Jose-Roman Bilbao-Castro,
A. Merino,
Inmaculada García,
José María Carazo,
José-Jesús Fernández:
Parameter optimization in 3D reconstruction on a large scale grid.
Parallel Computing 33(4-5): 250-263 (2007) |
| 2006 |
|---|
| 47 | EE | Ignacio Arganda-Carreras,
Carlos Oscar Sánchez Sorzano,
Roberto Marabini,
José María Carazo,
Carlos Ortiz-de-Solorzano,
Jan Kybic:
Consistent and Elastic Registration of Histological Sections Using Vector-Spline Regularization.
CVAMIA 2006: 85-95 |
| 46 | EE | Bartosz Telenczuk,
María J. Ledesma-Carbayo,
Javier A. Velázquez-Muriel,
Carlos Oscar Sánchez Sorzano,
José María Carazo,
Andrés Santos:
Molecular image registration using mutual information and differential evolution optimization.
ISBI 2006: 844-847 |
| 45 | EE | Carlos Oscar Sánchez Sorzano,
Roberto Marabini,
Alberto D. Pascual-Montano,
Sjors H. W. Scheres,
José María Carazo:
Optimization problems in electron microscopy of single particles.
Annals OR 148(1): 133-165 (2006) |
| 44 | EE | Monica Chagoyen,
Pedro Carmona-Saez,
Hagit Shatkay,
José María Carazo,
Alberto D. Pascual-Montano:
Discovering semantic features in the literature: a foundation for building functional associations.
BMC Bioinformatics 7: 41 (2006) |
| 43 | EE | Pedro Carmona-Saez,
Monica Chagoyen,
Andrés Rodríguez,
Oswaldo Trelles,
José María Carazo,
Alberto D. Pascual-Montano:
Integrated analysis of gene expression by association rules discovery.
BMC Bioinformatics 7: 54 (2006) |
| 42 | EE | Pedro Carmona-Saez,
Roberto D. Pascual-Marqui,
Francisco Tirado,
José María Carazo,
Alberto D. Pascual-Montano:
Biclustering of gene expression data by non-smooth non-negative matrix factorization.
BMC Bioinformatics 7: 78 (2006) |
| 41 | EE | Alberto D. Pascual-Montano,
José María Carazo,
Kieko Kochi,
Dietrich Lehmann,
Roberto D. Pascual-Marqui:
Nonsmooth Nonnegative Matrix Factorization (nsNMF).
IEEE Trans. Pattern Anal. Mach. Intell. 28(3): 403-415 (2006) |
| 2005 |
|---|
| 40 | EE | Sjors H. W. Scheres,
A. J. Merino,
Carlos Oscar Sánchez Sorzano,
José María Carazo:
Grid Computing in 3D-EM Image Processing Using Xmipp.
CBMS 2005: 561-563 |
| 39 | EE | Alberto D. Pascual-Montano,
Francisco Tirado,
Pedro Carmona-Saez,
José María Carazo,
Roberto D. Pascual-Marqui:
Two-way clustering of gene expression profiles by sparse matrix factorization.
CSB Workshops 2005: 103-104 |
| 38 | EE | Javier A. Velázquez-Muriel,
José María Carazo:
Extending the incorporation of superfamily structural information in the process of flexible fitting in 3D-EM.
CSB Workshops 2005: 209-210 |
| 37 | EE | Sjors H. W. Scheres,
Mikel Valle,
José María Carazo:
Fast maximum-likelihood refinement of electron microscopy images.
ECCB/JBI 2005: 244 |
| 36 | EE | Andrés Rodríguez,
José María Carazo,
Oswaldo Trelles-Salazar:
Mining association rules from biological databases.
JASIST 56(5): 493-504 (2005) |
| 35 | EE | Carlos Oscar Sánchez Sorzano,
Roberto Marabini,
Gabor T. Herman,
José María Carazo:
Multiobjective algorithm parameter optimization using multivariate statistics in three-dimensional electron microscopy reconstruction.
Pattern Recognition 38(12): 2587-2601 (2005) |
| 2004 |
|---|
| 34 | EE | Jose-Roman Bilbao-Castro,
José María Carazo,
José-Jesús Fernández,
Inmaculada García:
Parallelization and Comparison of 3D Iterative Reconstruction Algorithms.
PDP 2004: 96-102 |
| 33 | EE | Monica Chagoyen,
M. Erdem Kurul,
Pedro A. de Alarcón,
José María Carazo,
Amarnath Gupta:
Designing and executing scientific workflows with a programmable integrator.
Bioinformatics 20(13): 2092-2100 (2004) |
| 32 | EE | Roberto Marabini,
Carlos Oscar Sánchez Sorzano,
Samuel Matej,
José-Jesús Fernández,
José María Carazo,
Gabor T. Herman:
3-D reconstruction of 2-D crystals in real space.
IEEE Transactions on Image Processing 13(4): 549-561 (2004) |
| 31 | EE | José-Jesús Fernández,
José María Carazo,
Inmaculada García:
Three-dimensional reconstruction of cellular structures by electron microscope tomography and parallel computing.
J. Parallel Distrib. Comput. 64(2): 285-300 (2004) |
| 30 | EE | José-Jesús Fernández,
Jose-Roman Bilbao-Castro,
Roberto Marabini,
José María Carazo,
Inmaculada García:
Biological Structure Determination by EM is Well Suited to Grid Computing.
New Generation Comput. 22(2): (2004) |
| 29 | EE | José-Jesús Fernández,
Jose-Roman Bilbao-Castro,
Roberto Marabini,
José María Carazo,
Inmaculada García:
On the Suitability of Biological Structure Determination by Electron Microscopy to Grid Computing.
New Generation Comput. 23(1): (2004) |
| 28 | EE | Jose-Roman Bilbao-Castro,
Roberto Marabini,
José María Carazo,
Inmaculada García,
José-Jesús Fernández:
The Potential Of Grid Computing In Three-Dimensional Electron Microscopy.
Parallel Processing Letters 14(2): 151-162 (2004) |
| 2003 |
|---|
| 27 | EE | Monica Chagoyen,
M. Erdem Kurul,
Pedro A. de Alarcón,
Simone Santini,
Bertram Ludäscher,
José María Carazo,
Amarnath Gupta:
A Semantic Mediation Approach for Problems in Computational Molecular Biology.
CSB 2003: 386-387 |
| 26 | EE | José-Jesús Fernández,
Jose-Roman Bilbao-Castro,
Roberto Marabini,
José María Carazo,
Inmaculada García:
Grid Computing in Structure Determination of Biological Specimens by Electron Microscope Tomography.
European Across Grids Conference 2003: 171-181 |
| 25 | | Jose-Roman Bilbao-Castro,
José María Carazo,
Inmaculada García,
José-Jesús Fernández:
Parallel iterative reconstruction methods for structure determination of biological specimens by electron microscopy.
ICIP (1) 2003: 565-568 |
| 24 | | Jorge García de la Nava,
Daniel Franco Santaella,
Jesús Cuenca Alba,
José María Carazo,
Oswaldo Trelles,
Alberto D. Pascual-Montano:
Engene: the processing and exploratory analysis of gene expression data.
Bioinformatics 19(5): 657-658 (2003) |
| 2002 |
|---|
| 23 | EE | Pedro A. de Alarcón,
Alberto D. Pascual-Montano,
José María Carazo:
Spin Images and Neural Networks for Efficient Content-Based Retrieval in 3D Object Databases.
CIVR 2002: 225-234 |
| 22 | EE | Pedro A. de Alarcón,
Alberto D. Pascual-Montano,
Amarnath Gupta,
José María Carazo:
Modeling Shape and Topology of 3D Images of Biological Specimens.
ICPR (1) 2002: 79-82 |
| 21 | EE | Roberto Marabini,
Gabor T. Herman,
Carlos Oscar Sánchez Sorzano,
José María Carazo:
Volumetric constraints in 3D tomography applied to electron microscopy.
ISBI 2002: 641-644 |
| 20 | EE | Roberto Marabini,
Gabor T. Herman,
Carlos Oscar Sánchez Sorzano,
José María Carazo,
José-Jesús Fernández,
Samuel Matej:
3D reconstruction of 2D crystals from projections in real space.
ISBI 2002: 689-692 |
| 19 | EE | José-Jesús Fernández,
Albert F. Lawrence,
Javier Roca Piera,
Inmaculada García,
Mark H. Ellisman,
José María Carazo:
High Performance Computing in Electron Microscope Tomography of Complex Biological Structures.
VECPAR 2002: 166-180 |
| 18 | | Carlos Oscar Sánchez Sorzano,
José María Carazo,
Oswaldo Trelles:
Command-line interfaces can be efficiently brought to graphics: COLIMATE (the COmmand LIne MATE).
Softw., Pract. Exper. 32(9): 873-887 (2002) |
| 2001 |
|---|
| 17 | EE | Roberto D. Pascual-Marqui,
Alberto D. Pascual-Montano,
Kieko Kochi,
José María Carazo:
Smoothly distributed fuzzy c-means: a new self-organizing map.
Pattern Recognition 34(12): 2395-2402 (2001) |
| 1999 |
|---|
| 16 | | Alberto Pascual,
Montserrat Barcéna,
Juan J. Merelo Guervós,
José María Carazo:
Application of the Fuzzy Kohonen Clustering Network to Biological Macromolecules Images Classification.
IWANN (2) 1999: 331-340 |
| 15 | | Juan J. Merelo Guervós,
Víctor Manuel Rivas Santos,
Gustavo Romero,
Pedro A. Castillo Valdivieso,
Alberto Pascual,
José María Carazo:
Improved Automatic Classification of Biological Particles from Electron-Microscopy Images Using Genetic Neural Nets.
IWANN (2) 1999: 373-382 |
| 14 | | José María Carazo,
Ernst H. K. Stelzer,
A. Engel,
I. Fita,
C. Henn,
J. Machtynger,
P. McNeil,
David M. Shotton,
Monica Chagoyen,
Pedro A. de Alarcón,
R. Fritsch,
J. B. Heymann,
S. Kalko,
J. J. Pittet,
Patricia Rodriguez-Tomé,
Thomas Boudier:
Organising multi-dimensional biological image information: the BioImage Database.
Nucleic Acids Research 27(1): 280-283 (1999) |
| 1998 |
|---|
| 13 | | S. Lindek,
R. Fritsch,
Ernst H. K. Stelzer,
José María Carazo,
A. Engel,
I. Fita,
C. Henn,
P. McNeil,
David M. Shotton,
J. Machtynger:
Biolmage, the database of biological microscopy data.
German Conference on Bioinformatics 1998 |
| 12 | | Huaichun Wang,
Joaquín Dopazo,
José María Carazo:
Self-organizing tree growing network for classifying amino acids.
Bioinformatics 14(4): 376-377 (1998) |
| 11 | | Oswaldo Trelles,
Miguel A. Andrade,
Alfonso Valencia,
Emilio L. Zapata,
José María Carazo:
Computational space reduction and parallelization of a new clustering approach for large groups of sequences.
Bioinformatics 14(5): 439-451 (1998) |
| 10 | | Oswaldo Trelles,
C. Ceron,
Huaichun Wang,
Joaquín Dopazo,
José María Carazo:
New phylogenetic venues opened by a novel implementation of the DNAml algorithm.
Bioinformatics 14(6): 544-545 (1998) |
| 9 | | Juan J. Merelo Guervós,
Alberto Prieto,
Federico Morán,
Roberto Marabini,
José María Carazo:
Automatic Classification of Biological Particles from Electron-microscopy Images Using Conventional and Genetic-algorithm Optimized Learning Vector Quantization.
Neural Processing Letters 8(1): 55-65 (1998) |
| 8 | | C. Ceron,
Joaquín Dopazo,
Emilio L. Zapata,
José María Carazo,
Oswaldo Trelles:
Parallel Implementation of DNAml Program on Message-Passing Architectures.
Parallel Computing 24(5-6): 701-716 (1998) |
| 1997 |
|---|
| 7 | | Juan J. Merelo Guervós,
Alberto Prieto,
Federico Morán,
Roberto Marabini,
José María Carazo:
A GA-optimized Neural Network for Classification of Biological Particles from Electron-Microscopy Images.
IWANN 1997: 1174-1182 |
| 6 | | Joaquín Dopazo,
Huaichun Wang,
José María Carazo:
A New Type of Unsupervised Growing Neural Network for Biological Sequence Classification That Adopts the Topology of a Phylogenetic Tree.
IWANN 1997: 932-941 |
| 1996 |
|---|
| 5 | EE | Roberto Marabini,
José María Carazo:
On a new computationally fast image invariant based on bispectral projections.
Pattern Recognition Letters 17(9): 959-967 (1996) |
| 1995 |
|---|
| 4 | | Oswaldo Trelles-Salazar,
Emilio L. Zapata,
Joaquín Dopazo,
A. F. Coulson,
José María Carazo:
An image-processing approach to dotplots: an X-Window-based program for interactive analysis of dotplots derived from sequence and structural data.
Computer Applications in the Biosciences 11(3): 301-308 (1995) |
| 1994 |
|---|
| 3 | | Oswaldo Trelles-Salazar,
Emilio L. Zapata,
José María Carazo:
Mapping Strategies for Sequential Sequence Comparison Algorithms on LAN-Based Message Passing Architectures.
HPCN 1994: 197-202 |
| 2 | | Oswaldo Trelles-Salazar,
Emilio L. Zapata,
José María Carazo:
On an efficient parallelization of exhaustive sequence comparison algorithms on message passing architectures.
Computer Applications in the Biosciences 10(5): 509-511 (1994) |
| 1990 |
|---|
| 1 | EE | Francisco F. Rivera,
Emilio L. Zapata,
José María Carazo:
Cluster validity based on the hard tendency of the fuzzy classification.
Pattern Recognition Letters 11(1): 7-12 (1990) |
