Mark Gerstein

List of publications from the DBLP Bibliography Server - FAQ
Coauthor Index - Ask others: ACM DL/Guide - CiteSeer - CSB - Google - MSN - Yahoo

35EEKevin Y. Yip, Prianka Patel, Philip M. Kim, Donald M. Engelman, Drew McDermott, Mark Gerstein: An integrated system for studying residue coevolution in proteins. Bioinformatics 24(2): 290-292 (2008)
34EEHaiyuan Yu, Ronald Jansen, Gustavo Stolovitzky, Mark Gerstein: Total ancestry measure: quantifying the similarity in tree-like classification, with genomic applications. Bioinformatics 23(16): 2163-2173 (2007)
33EEAndrew Smith, Kei Cheung, Michael Krauthammer, Martin H. Schultz, Mark Gerstein: Leveraging the structure of the Semantic Web to enhance information retrieval for proteomics. Bioinformatics 23(22): 3073-3079 (2007)
32EEKevin Y. Yip, Haiyuan Yu, Philip M. Kim, Martin H. Schultz, Mark Gerstein: The tYNA platform for comparative interactomics: a web tool for managing, comparing and mining multiple networks. Bioinformatics 23(8): 1048 (2007)
31EEThomas E. Royce, Joel S. Rozowsky, Mark Gerstein: Assessing the need for sequence-based normalization in tiling microarray experiments. Bioinformatics 23(8): 988-997 (2007)
30EEMark Gerstein, Dov Greenbaum, Kei Cheung, Perry L. Miller: An interdepartmental Ph.D. program in computational biology and bioinformatics: The Yale perspective. Journal of Biomedical Informatics 40(1): 73-79 (2007)
29EEJohn E. Karro, Yangpan Yan, Deyou Zheng, Zhaolei Zhang, Nicholas Carriero, Philip Cayting, Paul M. Harrison, Mark Gerstein: Pseudogene.org: a comprehensive database and comparison platform for pseudogene annotation. Nucleic Acids Research 35(Database-Issue): 55-60 (2007)
28EEZhaolei Zhang, Nicholas Carriero, Deyou Zheng, John E. Karro, Paul M. Harrison, Mark Gerstein: PseudoPipe: an automated pseudogene identification pipeline. Bioinformatics 22(12): 1437-1439 (2006)
27EEAnne E. Counterman Burba, Ursula Lehnert, Eric Z. Yu, Mark Gerstein: Helix Interaction Tool (HIT): a web-based tool for analysis of helix-helix interactions in proteins. Bioinformatics 22(22): 2735-2738 (2006)
26EEKevin Y. Yip, Haiyuan Yu, Philip M. Kim, Martin H. Schultz, Mark Gerstein: The tYNA platform for comparative interactomics: a web tool for managing, comparing and mining multiple networks. Bioinformatics 22(23): 2968-2970 (2006)
25EEJiang Du, Joel S. Rozowsky, Jan O. Korbel, Zhengdong D. Zhang, Thomas E. Royce, Martin H. Schultz, Michael Snyder, Mark Gerstein: A supervised hidden markov model framework for efficiently segmenting tiling array data in transcriptional and chIP-chip experiments: systematically incorporating validated biological knowledge. Bioinformatics 22(24): 3016-3024 (2006)
24EEHaiyuan Yu, Alberto Paccanaro, Valery Trifonov, Mark Gerstein: Predicting interactions in protein networks by completing defective cliques. Bioinformatics 22(7): 823-829 (2006)
23EESamuel Flores, Nathaniel Echols, Duncan Milburn, Brandon Hespenheide, Kevin Keating, Jason Lu, Stephen Wells, Eric Z. Yu, Michael Thorpe, Mark Gerstein: The Database of Macromolecular Motions: new features added at the decade mark. Nucleic Acids Research 34(Database-Issue): 296-301 (2006)
22EEJoel S. Rozowsky, Paul Bertone, Thomas E. Royce, Sherman Weissman, Michael Snyder, Mark Gerstein: Analysis of Genomic Tiling Microarrays for Transcript Mapping and the Identification of Transcription Factor Binding Sites. BSB 2005: 28-29
21EEKei-Hoi Cheung, Kevin Y. Yip, Andrew Smith, Remko de Knikker, Andy Masiar, Mark Gerstein: YeastHub: a semantic web use case for integrating data in the life sciences domain. ISMB (Supplement of Bioinformatics) 2005: 85-96
20EEDov Greenbaum, Andrew Smith, Mark Gerstein: Editorial. Nucleic Acids Research 33(Database-Issue): 3-4 (2005)
19 Kei-Hoi Cheung, Deyun Pan, Andrew Smith, Michael Seringhaus, Shawn M. Douglas, Mark Gerstein: A XML-Based Approach to Integrating Heterogeneous Yeast Genome Data. METMBS 2004: 236-242
18EENan Lin, Baolin Wu, Ronald Jansen, Mark Gerstein, Hongyu Zhao: Information assessment on predicting protein-protein interactions. BMC Bioinformatics 5: 154 (2004)
17EEVadim Alexandrov, Mark Gerstein: Using 3D Hidden Markov Models that explicitly represent spatial coordinates to model and compare protein structures. BMC Bioinformatics 5: 2 (2004)
16EEPiotr Berman, Paul Bertone, Bhaskar DasGupta, Mark Gerstein, Ming-Yang Kao, Michael Snyder: Fast Optimal Genome Tiling with Applications to Microarray Design and Homology Search. Journal of Computational Biology 11(4): 766-785 (2004)
15 Mark Gerstein: Computational Proteomics: Genome-scale Analysis of Protein Structure, Function, & Evolution(Invited Talk). German Conference on Bioinformatics 2003: 53
14 Jiang Qian, Jimmy Lin, Nicholas M. Luscombe, Haiyuan Yu, Mark Gerstein: Prediction of regulatory networks: genome-wide identification of transcription factor targets from gene expression data. Bioinformatics 19(15): 1917-1926 (2003)
13 Nathaniel Echols, Duncan Milburn, Mark Gerstein: MolMovDB: analysis and visualization of conformational change and structural flexibility. Nucleic Acids Research 31(1): 478-482 (2003)
12 Nicholas M. Luscombe, Thomas E. Royce, Paul Bertone, Nathaniel Echols, Christine E. Horak, Joseph T. Chang, Michael Snyder, Mark Gerstein: ExpressYourself: a modular platform for processing and visualizing microarray data Nucleic Acids Research 31(13): 3477-3482 (2003)
11EEPiotr Berman, Paul Bertone, Bhaskar DasGupta, Mark Gerstein, Ming-Yang Kao, Michael Snyder: Fast Optimal Genome Tiling with Applications to Microarray Design and Homology Search. WABI 2002: 419-433
10 Dov Greenbaum, Ronald Jansen, Mark Gerstein: Analysis of mRNA expression and protein abundance data: an approach for the comparison of the enrichment of features in the cellular population of proteins and transcripts. Bioinformatics 18(4): 585-596 (2002)
9 Jerry Tsai, Mark Gerstein: Calculations of protein volumes: sensitivity analysis and parameter database. Bioinformatics 18(7): 985-995 (2002)
8 Kei-Hoi Cheung, Yang Liu, Anuj Kumar, Michael Snyder, Mark Gerstein, Perry L. Miller: An XML Application For Genomic Data Interoperation. BIBE 2001: 97-103
7 Jerry Tsai, Neil Voss, Mark Gerstein: Determining the minimum number of types necessary to represent the sizes of protein atoms. Bioinformatics 17(10): 949-956 (2001)
6 Paul Bertone, Yuval Kluger, Ning Lan, Deyou Zheng, Dinesh Christendat, Adelinda Yee, Aled M. Edwards, Cheryl H. Arrowsmith, Gaetano T. Montelione, Mark Gerstein: SPINE: an integrated tracking database and data mining approach for identifying feasible targets in high-throughput structural proteomics. Nucleic Acids Research 29(13): 2884-2898 (2001)
5 Mark Gerstein: [Invited Lecture] A Structural Census of Genomes: Comparing Bacterial, Eukaryotic, and Archaea Genomes in Terms of Protein Structure. German Conference on Bioinformatics 1998
4 Mark Gerstein: Measurement of the effectiveness of transitive sequence comparison, through a third 'intermediate' sequence. Bioinformatics 14(8): 707-714 (1998)
3 Mark Gerstein, Michael Levitt: Using Iterative Dynamic Programming to Obtain Accurate Pairwise and Multiple Alignments of Protein Structures. ISMB 1996: 59-67
2 Mark Gerstein, Russ B. Altman: Using a measure of structural variation to define a core for the globins. Computer Applications in the Biosciences 11(6): 633-644 (1995)
1 Russ B. Altman, Mark Gerstein: Finding an Average Core Structure: Application to the Globins. ISMB 1994: 19-27

Coauthor Index

1Vadim Alexandrov [17]
2Russ B. Altman [1] [2]
3Cheryl H. Arrowsmith [6]
4Piotr Berman [11] [16]
5Paul Bertone [6] [11] [12] [16] [22]
6Anne E. Counterman Burba [27]
7Nicholas Carriero [28] [29]
8Philip Cayting [29]
9Joseph T. Chang [12]
10Kei Cheung [30] [33]
11Kei-Hoi Cheung [8] [19] [21]
12Dinesh Christendat [6]
13Bhaskar DasGupta [11] [16]
14Shawn M. Douglas [19]
15Jiang Du [25]
16Nathaniel Echols [12] [13] [23]
17Aled M. Edwards [6]
18Donald M. Engelman [35]
19Samuel Flores [23]
20Dov Greenbaum [10] [20] [30]
21Paul M. Harrison [28] [29]
22Brandon Hespenheide [23]
23Christine E. Horak [12]
24Ronald Jansen [10] [18] [34]
25Ming-Yang Kao [11] [16]
26John E. Karro [28] [29]
27Kevin Keating [23]
28Philip M. Kim [26] [32] [35]
29Yuval Kluger [6]
30Remko de Knikker [21]
31Jan O. Korbel [25]
32Michael Krauthammer [33]
33Anuj Kumar [8]
34Ning Lan [6]
35Ursula Lehnert [27]
36Michael Levitt [3]
37Jimmy Lin [14]
38Nan Lin [18]
39Yang Liu [8]
40Jason Lu [23]
41Nicholas M. Luscombe [12] [14]
42Andy Masiar [21]
43Drew McDermott [35]
44Duncan Milburn [13] [23]
45Perry L. Miller [8] [30]
46Gaetano T. Montelione [6]
47Alberto Paccanaro [24]
48Deyun Pan [19]
49Prianka Patel [35]
50Jiang Qian [14]
51Thomas E. Royce [12] [22] [25] [31]
52Joel S. Rozowsky [22] [25] [31]
53Martin H. Schultz [25] [26] [32] [33]
54Michael Seringhaus [19]
55Andrew Smith [19] [20] [21] [33]
56Michael Snyder [8] [11] [12] [16] [22] [25]
57Gustavo Stolovitzky [34]
58Michael Thorpe [23]
59Valery Trifonov [24]
60Jerry Tsai [7] [9]
61Neil Voss [7]
62Sherman Weissman [22]
63Stephen Wells [23]
64Baolin Wu [18]
65Yangpan Yan [29]
66Adelinda Yee [6]
67Kevin Y. Yip [21] [26] [32] [35]
68Eric Z. Yu [23] [27]
69Haiyuan Yu [14] [24] [26] [32] [34]
70Zhaolei Zhang [28] [29]
71Zhengdong D. Zhang [25]
72Hongyu Zhao [18]
73Deyou Zheng [6] [28] [29]

Colors in the list of coauthors

Copyright © Sun May 17 03:24:02 2009 by Michael Ley (ley@uni-trier.de)