Ruth Nussinov

2008
44	EE	Ruth Nussinov, Tao Ju, Talapady Bhat, Jack Snoeyink, Karthik Ramani: Bio-geometry: challenges, approaches, and future opportunities in proteomics and drug discovery. Symposium on Solid and Physical Modeling 2008: 417-418
43	EE	Dina Schneidman-Duhovny, Oranit Dror, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson: Deterministic Pharmacophore Detection via Multiple Flexible Alignment of Drug-Like Molecules. Journal of Computational Biology 15(7): 737-754 (2008)
2007
42	EE	Yuval Inbar, Dina Schneidman-Duhovny, Oranit Dror, Ruth Nussinov, Haim J. Wolfson: Deterministic Pharmacophore Detection Via Multiple Flexible Alignment of Drug-Like Molecules. RECOMB 2007: 412-429
41	EE	Keren Lasker, Oranit Dror, Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson: EMatch: Discovery of High Resolution Structural Homologues of Protein Domains in Intermediate Resolution Cryo-EM Maps. IEEE/ACM Trans. Comput. Biology Bioinform. 4(1): 28-39 (2007)
2006
40	EE	Gilad Wainreb, Nurit Haspel, Haim J. Wolfson, Ruth Nussinov: A permissive secondary structure-guided superposition tool for clustering of protein fragments toward protein structure prediction via fragment assembly. Bioinformatics 22(11): 1343-1352 (2006)
39	EE	Maxim Shatsky, Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson: The Multiple Common Point Set Problem and Its Application to Molecule Binding Pattern Detection. Journal of Computational Biology 13(2): 407-428 (2006)
38	EE	Oranit Dror, Ruth Nussinov, Haim J. Wolfson: The ARTS web server for aligning RNA tertiary structures. Nucleic Acids Research 34(Web-Server-Issue): 412-415 (2006)
2005
37	EE	Alexandra Shulman-Peleg, Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson: MAPPIS: Multiple 3D Alignment of Protein-Protein Interfaces. CompLife 2005: 91-103
36	EE	Oranit Dror, Ruth Nussinov, Haim J. Wolfson: ARTS: alignment of RNA tertiary structures. ECCB/JBI 2005: 53
35	EE	Maxim Shatsky, Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson: Recognition of Binding Patterns Common to a Set of Protein Structures. RECOMB 2005: 440-455
34	EE	Keren Lasker, Oranit Dror, Ruth Nussinov, Haim J. Wolfson: Discovery of Protein Substructures in EM Maps. WABI 2005: 423-434
33	EE	Yuval Inbar, Haim J. Wolfson, Ruth Nussinov: Multiple Docking for Protein Structure Prediction. I. J. Robotic Res. 24(2-3): 131-150 (2005)
32	EE	Utkan Ogmen, Ozlem Keskin, A. Selim Aytuna, Ruth Nussinov, Attila Gürsoy: PRISM: protein interactions by structural matching. Nucleic Acids Research 33(Web-Server-Issue): 331-336 (2005)
31	EE	Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson: SiteEngines: recognition and comparison of binding sites and protein-protein interfaces. Nucleic Acids Research 33(Web-Server-Issue): 337-341 (2005)
30	EE	Dina Schneidman-Duhovny, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson: PatchDock and SymmDock: servers for rigid and symmetric docking. Nucleic Acids Research 33(Web-Server-Issue): 363-367 (2005)
2004
29	EE	Alexandra Shulman-Peleg, Shira Mintz, Ruth Nussinov, Haim J. Wolfson: Protein-Protein Interfaces: Recognition of Similar Spatial and Chemical Organizations. WABI 2004: 194-205
28	EE	Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson: FlexProt: Alignment of Flexible Protein Structures Without a Predefinition of Hinge Regions. Journal of Computational Biology 11(1): 83-106 (2004)
27		Maxim Shatsky, Oranit Dror, Dina Schneidman-Duhovny, Ruth Nussinov, Haim J. Wolfson: BioInfo3D: a suite of tools for structural bioinformatics. Nucleic Acids Research 32(Web-Server-Issue): 503-507 (2004)
2003
26	EE	Yuval Inbar, Hadar Benyamini, Ruth Nussinov, Haim J. Wolfson: Protein structure prediction via combinatorial assembly of sub-structural units. ISMB (Supplement of Bioinformatics) 2003: 158-168
25	EE	Oranit Dror, Hadar Benyamini, Ruth Nussinov, Haim J. Wolfson: MASS: multiple structural alignment by secondary structures. ISMB (Supplement of Bioinformatics) 2003: 95-104
2002
24	EE	Dina Duhovny, Ruth Nussinov, Haim J. Wolfson: Efficient Unbound Docking of Rigid Molecules. WABI 2002: 185-200
23	EE	Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson: MultiProt - A Multiple Protein Structural Alignment Algorithm. WABI 2002: 235-250
2001
22	EE	Sandeep Kumar, Haim J. Wolfson, Ruth Nussinov: Protein flexibility and electrostatic interactions. IBM Journal of Research and Development 45(3): 499-512 (2001)
21	EE	Chung-Jung Tsai, Buyong Ma, Yuk Yin Sham, Sandeep Kumar, Haim J. Wolfson, Ruth Nussinov: A hierarchical, building-block-based computational scheme for protein structure prediction. IBM Journal of Research and Development 45(3): 513-524 (2001)
20		Nathaniel Leibowitz, Ruth Nussinov, Haim J. Wolfson: MUSTA - A General, Efficient, Automated Method for Multiple Structure Alignment and Detection of Common Motifs: Application to Proteins. Journal of Computational Biology 8(2): 93-121 (2001)
2000
19		Maxim Shatsky, Zipora Y. Fligelman, Ruth Nussinov, Haim J. Wolfson: Alignment of Flexible Protein Structures. ISMB 2000: 329-343
1999
18		Nathaniel Leibowitz, Zipora Y. Fligelman, Ruth Nussinov, Haim J. Wolfson: Multiple Structural Alignment and Core Detection by Geometric Hashing. ISMB 1999: 169-177
1998
17		Ruth Nussinov, Raquel Norel, Bilha Sandak, George Verbitsky, Haim J. Wolfson: [Invited Lecture] Structural motifs in the interior and on the surfaces of protein monomers and at protein-protein interfaces. German Conference on Bioinformatics 1998
16		Bilha Sandak, Ruth Nussinov, Haim J. Wolfson: A Method for Biomolecular Structural Recognition and Docking Allowing Conformational Flexibility. Journal of Computational Biology 5(4): 631-654 (1998)
1996
15		Bilha Sandak, Ruth Nussinov, Haim J. Wolfson: Docking of Conformationally Flexible Proteins. CPM 1996: 271-287
1995
14		Bilha Sandak, Ruth Nussinov, Haim J. Wolfson: An automated computer vision and robotics-based technique for 3-D flexible biomolecular docking and matching. Computer Applications in the Biosciences 11(1): 87-99 (1995)
1993
13		Daniel Fischer, Raquel Norel, Ruth Nussinov, Haim J. Wolfson: 3-D Docking of Protein Molecules. CPM 1993: 20-34
1992
12		Daniel Fischer, Ruth Nussinov, Haim J. Wolfson: 3-D Substructure Matching in Protein Molecules. CPM 1992: 136-150
1991
11		Ruth Nussinov: Compositional variations in DNA sequences. Computer Applications in the Biosciences 7(3): 287-293 (1991)
10		Ruth Nussinov: Signals in DNA sequences and their potential properties. Computer Applications in the Biosciences 7(3): 295-299 (1991)
1989
9		Shu-Yun Le, J. Owens, Ruth Nussinov, Jih-H. Chen, Bruce A. Shapiro, Jacob V. Maizel: RNA secondary structures: comparison and determination of frequently recurring substructures by consensus. Computer Applications in the Biosciences 5(3): 205-210 (1989)
1988
8		Gad M. Landau, Uzi Vishkin, Ruth Nussinov: Locating alignments with k differences for nucleotide and amino acid sequences. Computer Applications in the Biosciences 4(1): 19-24 (1988)
7		J. Owens, D. Chatterjee, Ruth Nussinov, Andrzej K. Konopka, Jacob V. Maizel: A fixed-point alignment technique for detection of recurrent and common sequence motifs associated with biological features. Computer Applications in the Biosciences 4(1): 73-77 (1988)
6		Shu-Yun Le, Jih-H. Chen, Ruth Nussinov, Jacob V. Maizel: An improved secondary structure computation method and its application to intervening sequence in the human alpha-likeglobin mRNA precursors. Computer Applications in the Biosciences 4(3): 337-344 (1988)
1986
5		Gad M. Landau, Uzi Vishkin, Ruth Nussinov: An efficient string matching algorithm with k differences for nucleotide and amino acid sequences. Nucleic Acids Research 14(1): 31-46 (1986)
4		Bruce A. Shapiro, Ruth Nussinov, L. E. Lipkin, Jacob V. Maizel: A sequence analysis system encompassing rules for DNA helical distortion. Nucleic Acids Research 14(1): 75-86 (1986)
1984
3		E. Comay, Ruth Nussinov, O. Comay: An accelerated algorithm for calculating the secondary structure of single stranded RNAs. Nucleic Acids Research 12(1): 53-66 (1984)
1982
2		Ruth Nussinov, I. Tinoco Jr., A. B. Jacobson: Small changes in free energy assignments for unpaired bases do not affect predicted secondary structures in single stranded RNA. Nucleic Acids Research 10(1): 341-349 (1982)
1		Ruth Nussinov, I. Tinoco Jr., A. B. Jacobson: Secondary structure model for the complete simian virus 50 late precursor mRNA. Nucleic Acids Research 10(1): 351-363 (1982)

Coauthor Index

1	A. Selim Aytuna	[32]
2	Hadar Benyamini	[25] [26]
3	Talapady Bhat	[44]
4	D. Chatterjee	[7]
5	Jih-H. Chen	[6] [9]
6	E. Comay	[3]
7	O. Comay	[3]
8	Oranit Dror	[25] [27] [34] [36] [38] [41] [42] [43]
9	Dina Duhovny	[24]
10	Daniel Fischer	[12] [13]
11	Zipora Y. Fligelman	[18] [19]
12	Attila Gürsoy	[32]
13	Nurit Haspel	[40]
14	Yuval Inbar	[26] [30] [33] [42] [43]
15	A. B. Jacobson	[1] [2]
16	Tao Ju	[44]
17	Ozlem Keskin	[32]
18	Andrzej K. Konopka	[7]
19	Sandeep Kumar	[21] [22]
20	Gad M. Landau	[5] [8]
21	Keren Lasker	[34] [41]
22	Shu-Yun Le	[6] [9]
23	Nathaniel Leibowitz	[18] [20]
24	L. E. Lipkin	[4]
25	Buyong Ma	[21]
26	Jacob V. Maizel	[4] [6] [7] [9]
27	Shira Mintz	[29]
28	Raquel Norel	[13] [17]
29	Utkan Ogmen	[32]
30	J. Owens	[7] [9]
31	Karthik Ramani	[44]
32	Bilha Sandak	[14] [15] [16] [17]
33	Dina Schneidman-Duhovny	[27] [30] [42] [43]
34	Yuk Yin Sham	[21]
35	Bruce A. Shapiro	[4] [9]
36	Maxim Shatsky	[19] [23] [27] [28] [35] [37] [39] [41]
37	Alexandra Shulman-Peleg	[29] [31] [35] [37] [39]
38	Jack Snoeyink	[44]
39	I. Tinoco Jr.	[1] [2]
40	Chung-Jung Tsai	[21]
41	George Verbitsky	[17]
42	Uzi Vishkin	[5] [8]
43	Gilad Wainreb	[40]
44	Haim J. Wolfson	[12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30] [31] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43]

Colors in the list of coauthors