16. ISMB 2008:
Toronto,
Canada(Supplement of Bioinformatics)
Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008.
2008 BibTeX
Editorials
Sequence Analysis and Alignment
- Sören Sonnenburg, Alexander Zien, Petra Philips, Gunnar Rätsch:
POIMs: positional oligomer importance matrices - understanding support vector machine-based signal detectors.
6-14
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- Aleksandar Stojmirovic, E. Michael Gertz, Stephen F. Altschul, Yi-Kuo Yu:
The effectiveness of position- and composition-specific gap costs for protein similarity searches.
15-23
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- Thomas Abeel, Yvan Saeys, Pierre Rouzé, Yves Van de Peer:
ProSOM: core promoter prediction based on unsupervised clustering of DNA physical profiles.
24-31
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- Iman Hajirasouliha, Fereydoun Hormozdiari, Süleyman Cenk Sahinalp, Inanc Birol:
Optimal pooling for genome re-sequencing with ultra-high-throughput short-read technologies.
32-40
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- Yaniv Loewenstein, Elon Portugaly, Menachem Fromer, Michal Linial:
Efficient algorithms for accurate hierarchical clustering of huge datasets: tackling the entire protein space.
41-49
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- Yunpen Xu, Xuefeng Zhou, Weixiong Zhang:
MicroRNA prediction with a novel ranking algorithm based on random walks.
50-58
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- Seunghak Lee, Elango Cheran, Michael Brudno:
A robust framework for detecting structural variations in a genome.
59-67
Electronic Edition (link) BibTeX
- Chuong B. Do, Chuan-Sheng Foo, Serafim Batzoglou:
A max-margin model for efficient simultaneous alignment and folding of RNA sequences.
68-76
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Comparative Genomics
Evolution and Phylogeny
Gene Regulation and Transcriptomics
- Moran Yassour, Tommy Kaplan, Ariel Jaimovich, Nir Friedman:
Nucleosome positioning from tiling microarray data.
139-146
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- Tien-ho Lin, Naftali Kaminski, Ziv Bar-Joseph:
Alignment and classification of time series gene expression in clinical studies.
147-155
Electronic Edition (link) BibTeX
- Ivan G. Costa, Stefan Roepcke, Christoph Hafemeister, Alexander Schliep:
Inferring differentiation pathways from gene expression.
156-164
Electronic Edition (link) BibTeX
- Lucas D. Ward, Harmen J. Bussemaker:
Predicting functional transcription factor binding through alignment-free and affinity-based analysis of orthologous promoter sequences.
165-171
Electronic Edition (link) BibTeX
- Theo A. Knijnenburg, Lodewyk F. A. Wessels, Marcel J. T. Reinders:
Combinatorial influence of environmental parameters on transcription factor activity.
172-181
Electronic Edition (link) BibTeX
Protein Structure and Function
- Shuai Cheng Li, Dongbo Bu, Xin Gao, Jinbo Xu, Ming Li:
Designing succinct structural alphabets.
182-189
Electronic Edition (link) BibTeX
- Ludovica Montanucci, Piero Fariselli, Pier Luigi Martelli, Rita Casadio:
Predicting protein thermostability changes from sequence upon multiple mutations.
190-195
Electronic Edition (link) BibTeX
- Ivelin Georgiev, Daniel Keedy, Jane S. Richardson, David C. Richardson, Bruce Randall Donald:
Algorithm for backrub motions in protein design.
196-204
Electronic Edition (link) BibTeX
- Fei Xiong, Gopal Pandurangan, Chris Bailey-Kellogg:
Contact replacement for NMR resonance assignment.
205-213
Electronic Edition (link) BibTeX
- Menachem Fromer, Chen Yanover:
A computational framework to empower probabilistic protein design.
214-222
Electronic Edition (link) BibTeX
Protein Interactions and Molecular Networks
- Marcus T. Dittrich, Gunnar W. Klau, Andreas Rosenwald, Thomas Dandekar, Tobias Müller:
Identifying functional modules in protein-protein interaction networks: an integrated exact approach.
223-231
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- Yoshihiro Yamanishi, Michihiro Araki, Alex Gutteridge, Wataru Honda, Minoru Kanehisa:
Prediction of drug-target interaction networks from the integration of chemical and genomic spaces.
232-240
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- Noga Alon, Phuong Dao, Iman Hajirasouliha, Fereydoun Hormozdiari, Süleyman Cenk Sahinalp:
Biomolecular network motif counting and discovery by color coding.
241-249
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- Yanjun Qi, Fernanda Balem, Christos Faloutsos, Judith Klein-Seetharaman, Ziv Bar-Joseph:
Protein complex identification by supervised graph local clustering.
250-268
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Text Mining
- Thomas J. Lee, Ian T. Paulsen, Peter D. Karp:
Annotation-based inference of transporter function.
259-267
Electronic Edition (link) BibTeX
- Roman Klinger, Corinna Kolárik, Juliane Fluck, Martin Hofmann-Apitius, Christoph M. Friedrich:
Detection of IUPAC and IUPAC-like chemical names.
268-276
Electronic Edition (link) BibTeX
- Arzucan Özgür, Thuy Vu, Günes Erkan, Dragomir R. Radev:
Identifying gene-disease associations using centrality on a literature mined gene-interaction network.
277-285
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- Chun-Nan Hsu, Yu-Ming Chang, Cheng-Ju Kuo, Yu-Shi Lin, Han-Shen Huang, I-Fang Chung:
Integrating high dimensional bi-directional parsing models for gene mention tagging.
286-294
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Databases and Ontologies
Other Bioinformatics Applications and Methods
- Curtis Huttenhower, Olga G. Troyanskaya:
Assessing the functional structure of genomic data.
330-338
Electronic Edition (link) BibTeX
- Sean McIlwain, David Page, Edward L. Huttlin, Michael R. Sussman:
Matching isotopic distributions from metabolically labeled samples.
339-347
Electronic Edition (link) BibTeX
- Aaron A. Klammer, Sheila M. Reynolds, Jeff A. Bilmes, Michael J. MacCoss, William Stafford Noble:
Modeling peptide fragmentation with dynamic Bayesian networks for peptide identification.
348-356
Electronic Edition (link) BibTeX
- Pierre Baldi, Ryan W. Benz:
BLASTing small molecules - statistics and extreme statistics of chemical similarity scores.
357-365
Electronic Edition (link) BibTeX
- Yiqun Cao, Tao Jiang, Thomas Girke:
A maximum common substructure-based algorithm for searching and predicting drug-like compounds.
366-374
Electronic Edition (link) BibTeX
- Franck Rapaport, Emmanuel Barillot, Jean-Philippe Vert:
Classification of arrayCGH data using fused SVM.
375-382
Electronic Edition (link) BibTeX
Bioinformatics of Disease
- Ashley Vaughan, Sum-Ying Chiu, Gowthaman Ramasamy, Ling Li, Malcolm J. Gardner, Alice S. Tarun, Stefan H. I. Kappe, Xinxia Peng:
Assessment and improvement of the Plasmodium yoelii yoelii genome annotation through comparative analysis.
383-389
Electronic Edition (link) BibTeX
- Joshua W. K. Ho, Maurizio Stefani, Cristobal G. dos Remedios, Michael A. Charleston:
Differential variability analysis of gene expression and its application to human diseases.
390-398
Electronic Edition (link) BibTeX
- Michal Rosen-Zvi, André Altmann, Mattia C. F. Prosperi, Ehud Aharoni, Hani Neuvirth, Anders Sönnerborg, Eugen Schülter, Daniel Struck, Yardena Peres, Francesca Incardona, Rolf Kaiser, Maurizio Zazzi, Thomas Lengauer:
Selecting anti-HIV therapies based on a variety of genomic and clinical factors.
399-406
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- Yuan Wang, Xiaobo Zhou, Honghui Wang, King Li, Lixiu Yao, Stephen T. C. Wong:
Reversible jump MCMC approach for peak identification for stroke SELDI mass spectrometry using mixture model.
407-413
Electronic Edition (link) BibTeX
Other Bioinformatics Applications and Methods
Copyright © Sat May 16 23:25:47 2009
by Michael Ley (ley@uni-trier.de)
