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Sridhar Hannenhalli

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2008
30EESridhar Hannenhalli: Eukaryotic transcription factor binding sites - modeling and integrative search methods. Bioinformatics 24(11): 1325-1331 (2008)
29EERaffaele Giancarlo, Sridhar Hannenhalli: Guest Editors' Introduction to the Special Section on Algorithms in Bioinformatics. IEEE/ACM Trans. Comput. Biology Bioinform. 5(4): 482-483 (2008)
2007
28 Raffaele Giancarlo, Sridhar Hannenhalli: Algorithms in Bioinformatics, 7th International Workshop, WABI 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings Springer 2007
2006
27EEPerry Evans, Greg Donahue, Sridhar Hannenhalli: Conservation Patterns in cis-Elements Reveal Compensatory Mutations. Comparative Genomics 2006: 186-199
26EELogan Everett, Li-San Wang, Sridhar Hannenhalli: Dense subgraph computation via stochastic search: application to detect transcriptional modules. ISMB (Supplement of Bioinformatics) 2006: 117-123
2005
25EESridhar Hannenhalli, Li-San Wang: Enhanced position weight matrices using mixture models. ISMB (Supplement of Bioinformatics) 2005: 204-212
24EELi-San Wang, Shane T. Jensen, Sridhar Hannenhalli: An Interaction-Dependent Model for Transcription Factor Binding. Systems Biology and Regulatory Genomics 2005: 225-234
23EEJunwen Wang, Sridhar Hannenhalli: Generalizations of Markov model to characterize biological sequences. BMC Bioinformatics 6: 219 (2005)
2004
22EEVineet Bafna, Dan Gusfield, Sridhar Hannenhalli, Shibu Yooseph: A Note on Efficient Computation of Haplotypes via Perfect Phylogeny. Journal of Computational Biology 11(5): 858-866 (2004)
2002
21EEPiotr Berman, Sridhar Hannenhalli, Marek Karpinski: 1.375-Approximation Algorithm for Sorting by Reversals. ESA 2002: 200-210
2001
20 Sridhar Hannenhalli, Samuel Levy: Promoter prediction in the human genome. ISMB (Supplement of Bioinformatics) 2001: 90-96
19 Samuel Levy, Sridhar Hannenhalli, Christopher T. Workman: Enrichment of regulatory signals in conserved non-coding genomic sequence. Bioinformatics 17(10): 871-877 (2001)
18EEPiotr Berman, Sridhar Hannenhalli, Marek Karpinski: 1.375-Approximation Algorithm for Sorting by Reversals Electronic Colloquium on Computational Complexity (ECCC) 8(47): (2001)
2000
17 Vineet Bafna, Sridhar Hannenhalli, Ken Rice, Lisa Vawter: Ligand-Receptor Pairing Via Tree Comparison. Journal of Computational Biology 7(1-2): 59-70 (2000)
1999
16EESridhar Hannenhalli, Pavel A. Pevzner: Transforming Cabbage into Turnip: Polynomial Algorithm for Sorting Signed Permutations by Reversals. J. ACM 46(1): 1-27 (1999)
1997
15EERicha Agarwala, Serafim Batzoglou, Vlado Dancík, Scott E. Decatur, Martin Farach, Sridhar Hannenhalli, S. Muthukrishnan, Steven Skiena: Local rules for protein folding on a triangular lattice and generalized hydrophobicity in the HP model. RECOMB 1997: 1-2
14 Richa Agarwala, Serafim Batzoglou, Vlado Dancík, Scott E. Decatur, Martin Farach, Sridhar Hannenhalli, Steven Skiena: Local Rules for Protein Folding on a Triangular Lattice and Generalized Hydrophobicity in the HP Model. SODA 1997: 390-399
13 Vlado Dancík, Sridhar Hannenhalli, S. Muthukrishnan: Hardness of Flip-Cut Problems from Optical Mapping. Journal of Computational Biology 4(2): 119-126 (1997)
12 Richa Agarwala, Serafim Batzoglou, Vlado Dancík, Scott E. Decatur, Sridhar Hannenhalli, Martin Farach, S. Muthukrishnan, Steven Skiena: Local Rules for Protein Folding on a Triangular Lattice and Generalized Hydrophobicity in the HP Model. Journal of Computational Biology 4(3): 275-296 (1997)
1996
11 Piotr Berman, Sridhar Hannenhalli: Fast Sorting by Reversal. CPM 1996: 168-185
10 Sridhar Hannenhalli, Pavel A. Pevzner: To Cut... or Not to Cut (Applications of Comparative Physical Maps in Molecular Evolution). SODA 1996: 304-313
9 Sridhar Hannenhalli, W. Feldman, H. F. Lewis, Steven Skiena, Pavel A. Pevzner: Positional sequencing by hybridization. Computer Applications in the Biosciences 12(1): 19-24 (1996)
8EESridhar Hannenhalli: Polynomial-time Algorithm for Computing Translocation Distance Between Genomes. Discrete Applied Mathematics 71(1-3): 137-151 (1996)
1995
7 Sridhar Hannenhalli: Polynomial-time Algorithm for Computing Translocation Distance between Genomes. CPM 1995: 162-176
6 Sridhar Hannenhalli, Pavel A. Pevzner: Transforming Men into Mice (Polynomial Algorithm for Genomic Distance Problem). FOCS 1995: 581-592
5EESridhar Hannenhalli, Pavel A. Pevzner: Transforming cabbage into turnip: polynomial algorithm for sorting signed permutations by reversals. STOC 1995: 178-189
4 Sridhar Hannenhalli, Pavel A. Pevzner: Towards a Computational Theory of Genome Rearrangements. Computer Science Today 1995: 184-202
1993
3 Sridhar Hannenhalli, Kalyan S. Perumalla, N. Chandrasekharan, R. Sridhar: A Distributed Algorithm for Ear Decomposition. ICCI 1993: 180-184
1992
2 N. Chandrasekharan, Sridhar Hannenhalli: Efficient Algorithms for Computing Matching and Chromatic Polynominals on Series-Parallel Graphs. ICCI 1992: 42-45
1991
1EEKien A. Hua, Sridhar Hannenhalli: Parallel Transitive Closure Computations Using Topological Sort. PDIS 1991: 122-129

Coauthor Index

1Richa Agarwala [12] [14] [15]
2Vineet Bafna [17] [22]
3Serafim Batzoglou [12] [14] [15]
4Piotr Berman [11] [18] [21]
5N. Chandrasekharan [2] [3]
6Vlado Dancík [12] [13] [14] [15]
7Scott E. Decatur [12] [14] [15]
8Greg Donahue [27]
9Perry Evans [27]
10Logan Everett [26]
11Martin Farach-Colton (Martin Farach) [12] [14] [15]
12W. Feldman [9]
13Raffaele Giancarlo [28] [29]
14Dan Gusfield [22]
15Kien A. Hua [1]
16Shane T. Jensen [24]
17Marek Karpinski [18] [21]
18Samuel Levy [19] [20]
19H. F. Lewis [9]
20S. Muthukrishnan (S. Muthu Muthukrishnan) [12] [13] [15]
21Kalyan S. Perumalla [3]
22Pavel A. Pevzner [4] [5] [6] [9] [10] [16]
23Ken Rice [17]
24Steven Skiena [9] [12] [14] [15]
25R. Sridhar [3]
26Lisa Vawter [17]
27Junwen Wang [23]
28Li-San Wang [24] [25] [26]
29Christopher T. Workman [19]
30Shibu Yooseph [22]

Colors in the list of coauthors

Copyright © Sun May 17 03:24:02 2009 by Michael Ley (ley@uni-trier.de)