7. WABI 2007:
Philadelphia,
PA,
USA
Raffaele Giancarlo, Sridhar Hannenhalli (Eds.):
Algorithms in Bioinformatics, 7th International Workshop, WABI 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings.
Lecture Notes in Computer Science 4645 Springer 2007, ISBN 978-3-540-74125-1 BibTeX
- Pavel A. Pevzner:
Shotgun Protein Sequencing.
1
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- Evgeni Tsivtsivadze, Jorma Boberg, Tapio Salakoski:
Locality Kernels for Protein Classification.
2-11
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- Roy Varshavsky, Menachem Fromer, Amit Man, Michal Linial:
When Less Is More: Improving Classification of Protein Families with a Minimal Set of Global Features.
12-24
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- Marco Vassura, Luciano Margara, Pietro di Lena, Filippo Medri, Piero Fariselli, Rita Casadio:
Fault Tolerance for Large Scale Protein 3D Reconstruction from Contact Maps.
25-37
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- Jieun K. Jeong, Piotr Berman, Teresa M. Przytycka:
Bringing Folding Pathways into Strand Pairing Prediction.
38-48
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- Loredana M. Genovese, Filippo Geraci, Marco Pellegrini:
A Fast and Accurate Heuristic for the Single Individual SNP Haplotyping Problem with Many Gaps, High Reading Error Rate and Low Coverage.
49-60
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- Phil Hyoun Lee, Hagit Shatkay:
Two Birds, One Stone: Selecting Functionally Informative Tag SNPs for Disease Association Studies.
61-72
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- Justin Kennedy, Ion I. Mandoiu, Bogdan Pasaniuc:
Genotype Error Detection Using Hidden Markov Models of Haplotype Diversity.
73-84
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- Pasi Rastas, Esko Ukkonen:
Haplotype Inference Via Hierarchical Genotype Parsing.
85-97
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- Antoni Lozano, Ron Y. Pinter, Oleg Rokhlenko, Gabriel Valiente, Michal Ziv-Ukelson:
Seeded Tree Alignment and Planar Tanglegram Layout.
98-110
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- Hadas Birin, Zohar Gal-Or, Isaac Elias, Tamir Tuller:
Inferring Models of Rearrangements, Recombinations, and Horizontal Transfers by the Minimum Evolution Criterion.
111-123
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- Mukul S. Bansal, Oliver Eulenstein:
An Omega(n2/log n) Speed-Up of TBR Heuristics for the Gene-Duplication Problem.
124-135
Electronic Edition (link) BibTeX
- Alberto Apostolico, Claudia Tagliacollo:
Incremental Discovery of Irredundant Motif Bases in Time O(|Sigma| n2 log n).
136-148
Electronic Edition (link) BibTeX
- Christina Boucher, Daniel G. Brown, Paul Church:
A Graph Clustering Approach to Weak Motif Recognition.
149-160
Electronic Edition (link) BibTeX
- Hatice Gulcin Ozer, William C. Ray:
Informative Motifs in Protein Family Alignments.
161-170
Electronic Edition (link) BibTeX
- Joe Dundas, T. Andrew Binkowski, Bhaskar DasGupta, Jie Liang:
Topology Independent Protein Structural Alignment.
171-182
Electronic Edition (link) BibTeX
- Giuseppe Nicosia, Giovanni Stracquadanio:
Generalized Pattern Search and Mesh Adaptive Direct Search Algorithms for Protein Structure Prediction.
183-193
Electronic Edition (link) BibTeX
- Degui Zhi, Maxim Shatsky, Steven E. Brenner:
Alignment-Free Local Structural Search by Writhe Decomposition.
194-195
Electronic Edition (link) BibTeX
- Xueyi Wang, Jack Snoeyink:
Defining and Computing Optimum RMSD for Gapped Multiple Structure Alignment.
196-207
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- Mihaela Pertea, Steven Salzberg:
Using Protein Domains to Improve the Accuracy of Ab Initio Gene Finding.
208-215
Electronic Edition (link) BibTeX
- Lenwood S. Heath, Amrita Pati:
Genomic Signatures in De Bruijn Chains.
216-227
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- Pavel P. Kuksa, Vladimir Pavlovic:
Fast Kernel Methods for SVM Sequence Classifiers.
228-239
Electronic Edition (link) BibTeX
- Rastislav Srámek, Brona Brejová, Tomás Vinar:
On-Line Viterbi Algorithm for Analysis of Long Biological Sequences.
240-251
Electronic Edition (link) BibTeX
- Christopher James Langmead, Sumit Kumar Jha:
Predicting Protein Folding Kinetics Via Temporal Logic Model Checking.
252-264
Electronic Edition (link) BibTeX
- Ankur Dhanik, Peggy Yao, Nathan Marz, Ryan Propper, Charles Kou, Guanfeng Liu, Henry van den Bedem, Jean-Claude Latombe:
Efficient Algorithms to Explore Conformation Spaces of Flexible Protein Loops.
265-276
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- Vicky Choi, Chunfang Zheng, Qian Zhu, David Sankoff:
Algorithms for the Extraction of Synteny Blocks from Comparative Maps.
277-288
Electronic Edition (link) BibTeX
- Paul Medvedev, Konstantinos Georgiou, Gene Myers, Michael Brudno:
Computability of Models for Sequence Assembly.
289-301
Electronic Edition (link) BibTeX
- Jaime Davila, Sudha Balla, Sanguthevar Rajasekaran:
Fast Algorithms for Selecting Specific siRNA in Complete mRNA Data.
302-309
Electronic Edition (link) BibTeX
- Chunmei Liu, Yinglei Song, Louis W. Shapiro:
RNA Folding Including Pseudoknots: A New Parameterized Algorithm and Improved Upper Bound.
310-322
Electronic Edition (link) BibTeX
- Hosna Jabbari, Anne Condon, Ana Pop, Cristina Pop, Yinglei Zhao:
HFold: RNA Pseudoknotted Secondary Structure Prediction Using Hierarchical Folding.
323-334
Electronic Edition (link) BibTeX
- Axel Mosig, Julian J.-L. Chen, Peter F. Stadler:
Homology Search with Fragmented Nucleic Acid Sequence Patterns.
335-345
Electronic Edition (link) BibTeX
- Lucian Ilie, Silvana Ilie:
Fast Computation of Good Multiple Spaced Seeds.
346-358
Electronic Edition (link) BibTeX
- Eagu Kim, John D. Kececioglu:
Inverse Sequence Alignment from Partial Examples.
359-370
Electronic Edition (link) BibTeX
- Maja Bucan:
Novel Approaches in Psychiatric Genomics.
371
Electronic Edition (link) BibTeX
- Francis Y. L. Chin, Henry C. M. Leung, Wing-Kin Sung, Siu-Ming Yiu:
The Point Placement Problem on a Line - Improved Bounds for Pairwise Distance Queries.
372-382
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- Alexander Schliep, Roland Krause:
Efficient Computational Design of Tiling Arrays Using a Shortest Path Approach.
383-394
Electronic Edition (link) BibTeX
- Yonghui Wu, Prasanna Bhat, Timothy J. Close, Stefano Lonardi:
Efficient and Accurate Construction of Genetic Linkage Maps from Noisy and Missing Genotyping Data.
395-406
Electronic Edition (link) BibTeX
- Réka Albert, Bhaskar DasGupta, Riccardo Dondi, Sema Kachalo, Eduardo D. Sontag, Alexander Zelikovsky, Kelly Westbrooks:
A Novel Method for Signal Transduction Network Inference from Indirect Experimental Evidence.
407-419
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- Geoffrey Koh, Lisa Tucker-Kellogg, David Hsu, P. S. Thiagarajan:
Composing Globally Consistent Pathway Parameter Estimates Through Belief Propagation.
420-430
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Copyright © Sat May 16 23:47:07 2009
by Michael Ley (ley@uni-trier.de)
