4. APBC 2006: Taipei, Taiwan

Tao Jiang, Ueng-Cheng Yang, Yi-Ping Phoebe Chen, Limsoon Wong (Eds.): Proceedings of 4th Asia-Pacific Bioinformatics Conference. 13-16 February 2006, Taipei, Taiwan. Imperial College Press, London 2006, ISBN 1-86094-623-2 BibTeX

Click here to purchase the book.

Preface

• Tao Jiang, Ueng-Cheng Yang, Yi-Ping Phoebe Chen, Limsoon Wong:
  Preface.
  Electronic Edition (link) BibTeX

Keynote Papers

• Wen-Hsiung Li:
  On the Inference of Regulatory Elements, Circuits, and Modules. 1
  Electronic Edition (link) BibTeX
• Mark A. Ragan:
  Automating the Search for Lateral Gene Transfer. 3
  Electronic Edition (link) BibTeX
• Michael S. Waterman:
  Whole Genome Optical Mapping. 5
  Electronic Edition (link) BibTeX

Contributed Papers

• Dmitry A. Konovalov:
  Accuracy of Four Heuristics for the Full Sibship Reconstruction Problem in the Presence of Genotype Errors. 7-16
  Electronic Edition (link) BibTeX
• Patrick C. H. Ma, Keith C. C. Chan:
  Inference of Gene Regulatory Networks from Microarray Data: A Fuzzy Logic Approach. 17-26
  Electronic Edition (link) BibTeX
• C. W. Li, W. C. Chang, B. S. Chen:
  System Identification and Robustness Analysis of the Circadian Regulatory Network via Microarray Data in Arabidopsis Thaliana. 27-37
  Electronic Edition (link) BibTeX
• Paul Horton, Keun-Joon Park, Takeshi Obayashi, Kenta Nakai:
  Protein Subcellular Localisation Prediction with WoLF PSORT. 39-48
  Electronic Edition (link) BibTeX
• Pin-Hao Chi, Chi-Ren Shyu:
  Predicting Ranked SCOP Domains by Mining Associations of Visual Contents in Distance Matrices. 49-58
  Electronic Edition (link) BibTeX
• Derek A. Ruths, Luay Nakhleh:
  RECOMP: A Parsimony-Based Method for Detecting Recombination. 59-68
  Electronic Edition (link) BibTeX
• Hee-Jeong Jin, Hye-Jung Kim, Jeong-Hyeon Choi, Hwan-Gue Cho:
  AlignScope: A Visual Mining Tool for Gene Team Finding with Whole Genome Alignment. 69-78
  Electronic Edition (link) BibTeX
• Francis Y. L. Chin, Henry C. M. Leung:
  An Efficient Algorithm for String Motif Discovery. 79-88
  Electronic Edition (link) BibTeX
• Yuji Kawada, Yasubumi Sakakibara:
  Discriminative Detection of Cis-Acting Regulatory Variation From Location Data. 89-98
  Electronic Edition (link) BibTeX
• Tatsuya Akutsu, Morihiro Hayashida, Wai-Ki Ching, Michael K. Ng:
  On the Complexity of Finding Control Strategies for Boolean Networks. 99-108
  Electronic Edition (link) BibTeX
• Ket Fah Chong, Kang Ning, Hon Wai Leong, Pavel A. Pevzner:
  Characterization of Multi-Charge Mass Spectra for Peptide Sequencing. 109-119
  Electronic Edition (link) BibTeX
• Yifei Ma, Guoren Wang, Yongguang Li, Yuhai Zhao:
  EDAM: An Efficient Clique Discovery Algorithm with Frequency Transformation for Finding Motifs. 119-128
  Electronic Edition (link) BibTeX
• Michael K. Ng:
  A Recursive Method for Solving Haplotype Frequencies in Multiple Loci Linkage Analysis. 129-138
  Electronic Edition (link) BibTeX
• Sabyasachi Das, Sandip Paul, Chitra Dutta:
  Trends in Codon and Amino Acid Usage in Human Pathogen Tropheryma Whipplei, the only Known Actinobacteria with Reduced Genome. 139-148
  Electronic Edition (link) BibTeX
• Sandip Paul, Sabyasachi Das, Chitra Dutta:
  Consequences of Mutation, Selection, and Physico-Chemical Properties of Encoded Proteins on Synonymous Codon Usage in Adenoviruses. 149-158
  Electronic Edition (link) BibTeX
• Zhipeng Cai, Maysam Heydari, Guohui Lin:
  Microarray Missing Value Imputation by Iterated Local Least Squares. 159-168
  Electronic Edition (link) BibTeX
• Steinar Thorvaldsen, Elinor Ytterstad, Tor Flå:
  Property-Dependent Analysis of Aligned Proteins from Two Or More Populations. 169-178
  Electronic Edition (link) BibTeX
• Li Shen, Eng Chong Tan:
  A Generalized Output-Coding Scheme with SVM for Multiclass Microarray Classification. 179-186
  Electronic Edition (link) BibTeX
• Derek A. Ruths, Luay Nakhleh:
  Techniques for Assessing Phylogenetic Branch Support: A Performance Study. 187-196
  Electronic Edition (link) BibTeX
• Yi-Ping Phoebe Chen, Qingfeng Chen:
  Analyzing Inconsistency Toward Enhancing Integration of Biological Molecular Databases. 197-206
  Electronic Edition (link) BibTeX
• Christine Sinoquet:
  A Novel Approach for Structured Consensus Motif Inference Under Specificity and Quorum Constraints. 207-216
  Electronic Edition (link) BibTeX
• Christopher James Langmead:
  A Randomized Algorithm for Learning Mahalanobis Metrics: Application to Classification and Regression of Biological Data. 217-226
  Electronic Edition (link) BibTeX
• Marcos J. Araúzo-Bravo, Satoshi Fujii, Hidetoshi Kono, Akinori Sarai:
  Disentangling the Role of Tetranucleotide in the Sequence-Dependence of DNA Conformation: A Molecular Dynamics Approach. 227-236
  Electronic Edition (link) BibTeX
• Zhong-Ru Xie, Ming-Jing Hwang:
  A New Neural Network for B-Turn Prediction: the Effect of Site-Specific Amino Acid Preference. 237-246
  Electronic Edition (link) BibTeX
• Shao-Shan Huang, Debra L. Fulton, David J. Arenillas, Paul Perco, Shannan J. Ho Sui, James R. Mortimer, Wyeth W. Wasserman:
  Identification of Over-Represented Combinations of Transcription Factor Binding Sites in Sets of Co-Expressed Genes. 247-256
  Electronic Edition (link) BibTeX
• Ching-Tai Chen, Hsin-Nan Lin, Kuen-Pin Wu, Ting-Yi Sung, Wen-Lian Hsu:
  A Knowledge-Based Approach to Protein Local Structure Prediction. 257-266
  Electronic Edition (link) BibTeX
• Liang Huai Yang, Wynne Hsu, Mong-Li Lee, Limsoon Wong:
  Identification of MicroRNA Precursors via SVM. 267-276
  Electronic Edition (link) BibTeX
• M. Shashikanth, A. Snethalatharani, S. K. Mubarak, K. Ulaganathan:
  Genome Wide Computational Analysis of Small Nuclear RNA Genes for Oryza Sativa (Indica and Japonica). 277-286
  Electronic Edition (link) BibTeX
• Xiaoxu Han:
  Resolving the Gene Tree and Species Tree Problem by Phylogenetic Mining. 287-296
  Electronic Edition (link) BibTeX
• Ján Manuch, Xiaohong Zhao, Ladislav Stacho, Arvind Gupta:
  Characterization of the Existence of Galled-Tree Networks. 297-306
  Electronic Edition (link) BibTeX
• Johannes Aßfalg, Hans-Peter Kriegel, Peer Kröger, Peter Kunath, Alexey Pryakhin, Matthias Renz:
  Semi-Supervised Threshold Queries on Pharmacogenomics Time Sequences. 307-316
  Electronic Edition (link) BibTeX
• K. Arun, Christopher James Langmead:
  Structure-Based Chemical Shift Prediction Using Random Forests Non-Linear Regression. 317-326
  Electronic Edition (link) BibTeX
• Minlie Huang, Xiaoyan Zhu, Shilin Ding, Hao Yu, Ming Li:
  ONBRIRES: Ontology-Based Biological Relation Extraction System. 327-336
  Electronic Edition (link) BibTeX
• P. Y. Chan, Tak Wah Lam, Siu-Ming Yiu:
  A More Accurate and Efficient Whole Genome Phylogeny. 337-352
  Electronic Edition (link) BibTeX
• De Pan, Fei Wang:
  Gene Expression Data Clustering Based on Local Similarity Combination. 353-362
  Electronic Edition (link) BibTeX