| 2008 |
| 6 | EE | Theo A. Knijnenburg,
Lodewyk F. A. Wessels,
Marcel J. T. Reinders:
Combinatorial influence of environmental parameters on transcription factor activity.
ISMB 2008: 172-181 |
| 5 | EE | Theo A. Knijnenburg,
Lodewyk F. A. Wessels,
Marcel J. T. Reinders:
Creating gene set activity profiles with time-series expression data.
IJBRA 4(3): 306-323 (2008) |
| 2007 |
| 4 | EE | Maarten Clements,
Eugene P. van Someren,
Theo A. Knijnenburg,
Marcel J. T. Reinders:
Integration of Known Transcription Factor Binding Site Information and Gene Expression Data to Advance from Co-Expression to Co-Regulation.
Genomics, Proteomics & Bioinformatics 5(2): 86-101 (2007) |
| 2006 |
| 3 | EE | Theo A. Knijnenburg,
Lodewyk F. A. Wessels,
Marcel J. T. Reinders:
Condition Transition Analysis Reveals TF Activity Related to Nutrient-Limitation-Specific Effects of Oxygen Presence in Yeast.
CMSB 2006: 271-284 |
| 2 | EE | Theo A. Knijnenburg,
Marcel J. T. Reinders,
Lodewyk F. A. Wessels:
Artifacts of Markov blanket filtering based on discretized features in small sample size applications.
Pattern Recognition Letters 27(7): 709-714 (2006) |
| 2005 |
| 1 | EE | Theo A. Knijnenburg,
Marcel J. T. Reinders,
J. M. Daran,
P. Daran-Lapujade,
Lodewyk F. A. Wessels:
Relating transcription factors, modules of genes and cultivation conditions in Saccharomyces cerevisiae.
CSB Workshops 2005: 71-72 |