| 2008 |
|---|
| 8 | EE | Lucas D. Ward,
Harmen J. Bussemaker:
Predicting functional transcription factor binding through alignment-free and affinity-based analysis of orthologous promoter sequences.
ISMB 2008: 165-171 |
| 7 | EE | Barrett C. Foat,
Ronald G. Tepper,
Harmen J. Bussemaker:
TransfactomeDB: a resource for exploring the nucleotide sequence specificity and condition-specific regulatory activity of trans-acting factors.
Nucleic Acids Research 36(Database-Issue): 125-131 (2008) |
| 2006 |
|---|
| 6 | EE | Barrett C. Foat,
Alexandre V. Morozov,
Harmen J. Bussemaker:
Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE.
ISMB (Supplement of Bioinformatics) 2006: 141-149 |
| 2005 |
|---|
| 5 | EE | André Boorsma,
Barrett C. Foat,
Daniel Vis,
Frans Klis,
Harmen J. Bussemaker:
T-profiler: scoring the activity of predefined groups of genes using gene expression data.
Nucleic Acids Research 33(Web-Server-Issue): 592-595 (2005) |
| 2004 |
|---|
| 4 | EE | Feng Gao,
Barrett C. Foat,
Harmen J. Bussemaker:
Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data.
BMC Bioinformatics 5: 31 (2004) |
| 2003 |
|---|
| 3 | | Crispin Roven,
Harmen J. Bussemaker:
REDUCE: an online tool for inferring cis-regulatory elements and transcriptional module activities from microarray data.
Nucleic Acids Research 31(13): 3487-3490 (2003) |
| 2001 |
|---|
| 2 | EE | Harmen J. Bussemaker,
Hao Li,
Eric D. Siggia:
Regulatory element detection using correlation with expression (abstract only).
RECOMB 2001: 86 |
| 2000 |
|---|
| 1 | | Harmen J. Bussemaker,
Hao Li,
Eric D. Siggia:
Regulatory Element Detection Using a Probabilistic Segmentation Model.
ISMB 2000: 67-74 |
