Michael Brudno

2008
19	EE	Seunghak Lee, Elango Cheran, Michael Brudno: A robust framework for detecting structural variations in a genome. ISMB 2008: 59-67
18	EE	Gerald Quon, Yee Whye Teh, Esther Chan, Timothy R. Hughes, Michael Brudno, Quaid Morris: A mixture model for the evolution of gene expression in non-homogeneous datasets. NIPS 2008: 1297-1304
17	EE	Michael Brudno, Bernard M. E. Moret, C. Randal Linder, Tandy Warnow: Session Introduction. Pacific Symposium on Biocomputing 2008: 1-2
16	EE	A. V. Dalca, Michael Brudno: FRESCO: Flexible Alignment with Rectangle Scoring Schemes. Pacific Symposium on Biocomputing 2008: 3-14
15	EE	Paul Medvedev, Michael Brudno: Ab Initio Whole Genome Shotgun Assembly with Mated Short Reads. RECOMB 2008: 50-64
14	EE	Vladimir Yanovski, Stephen M. Rumble, Michael Brudno: Read Mapping Algorithms for Single Molecule Sequencing Data. WABI 2008: 38-49
2007
13	EE	Paul Medvedev, Konstantinos Georgiou, Gene Myers, Michael Brudno: Computability of Models for Sequence Assembly. WABI 2007: 289-301
12	EE	Michael Brudno, Alexander Poliakov, Simon Minovitsky, Igor Ratnere, Inna Dubchak: Multiple whole genome alignments and novel biomedical applications at the VISTA portal. Nucleic Acids Research 35(Web-Server-Issue): 669-674 (2007)
2006
11	EE	Galina Yu. Kovaleva, Georgii A. Bazykin, Michael Brudno, Mikhail S. Gelfand: Comparative Genomics of Transcriptional Regulation in Yeasts and its Application to Identification of a Candidate Alpha-isopropylmalate Transporter. J. Bioinformatics and Computational Biology 4(5): 981-998 (2006)
2004
10		Chuong B. Do, Michael Brudno, Serafim Batzoglou: PROBCONS: Probabilistic Consistency-Based Multiple Alignment of Amino Acid Sequences. AAAI 2004: 703-708
9	EE	Mukund Sundararajan, Michael Brudno, Kerrin Small, Arend Sidow, Serafim Batzoglou: Chaining Algorithms for Alignment of Draft Sequence. WABI 2004: 326-337
8	EE	Nameeta Shah, Olivier Couronne, Len A. Pennacchio, Michael Brudno, Serafim Batzoglou, E. Wes Bethel, Edward M. Rubin, Bernd Hamann, Inna Dubchak: Phylo-VISTA: interactive visualization of multiple DNA sequence alignments. Bioinformatics 20(5): 636-643 (2004)
7		Michael Brudno, Rasmus Steinkamp, Burkhard Morgenstern: The CHAOS/DIALIGN WWW server for multiple alignment of genomic sequences. Nucleic Acids Research 32(Web-Server-Issue): 41-44 (2004)
2003
6	EE	Michael Brudno, Sanket Malde, Alexander Poliakov, Chuong B. Do, Olivier Couronne, Inna Dubchak, Serafim Batzoglou: Glocal alignment: finding rearrangements during alignment. ISMB (Supplement of Bioinformatics) 2003: 54-62
5	EE	Michael Brudno, Michael Chapman, Berthold Göttgens, Serafim Batzoglou, Burkhard Morgenstern: Fast and sensitive multiple alignment of large genomic sequences. BMC Bioinformatics 4: 66 (2003)
4		Leila Taher, Oliver Rinner, Saurabh Garg, Alexander Sczyrba, Michael Brudno, Serafim Batzoglou, Burkhard Morgenstern: AGenDA: homology-based gene prediction. Bioinformatics 19(12): 1575-1577 (2003)
2002
3	EE	Michael Brudno, Burkhard Morgenstern: Fast and Sensitive Alignment of Large Genomic Sequences. CSB 2002: 138-
2000
2		Chris Mayor, Michael Brudno, Jody R. Schwartz, Alexander Poliakov, Edward M. Rubin, Kelly A. Frazer, Lior Pachter, Inna Dubchak: VISTA : visualizing global DNA sequence alignments of arbitrary length. Bioinformatics 16(11): 1046-1047 (2000)
1		I. Dralyuk, Michael Brudno, Mikhail S. Gelfand, Manfred Zorn, Inna Dubchak: ASDB: database of alternatively spliced genes. Nucleic Acids Research 28(1): 296-297 (2000)

Coauthor Index

1	Serafim Batzoglou	[4] [5] [6] [8] [9] [10]
2	Georgii A. Bazykin	[11]
3	E. Wes Bethel (Wes Bethel)	[8]
4	Esther Chan	[18]
5	Michael Chapman	[5]
6	Elango Cheran	[19]
7	Olivier Couronne	[6] [8]
8	A. V. Dalca	[16]
9	Chuong B. Do	[6] [10]
10	I. Dralyuk	[1]
11	Inna Dubchak	[1] [2] [6] [8] [12]
12	Kelly A. Frazer	[2]
13	Saurabh Garg	[4]
14	Mikhail S. Gelfand	[1] [11]
15	Konstantinos Georgiou	[13]
16	Berthold Göttgens	[5]
17	Bernd Hamann	[8]
18	Timothy R. Hughes	[18]
19	Galina Yu. Kovaleva	[11]
20	Seunghak Lee	[19]
21	C. Randal Linder	[17]
22	Sanket Malde	[6]
23	Chris Mayor	[2]
24	Paul Medvedev	[13] [15]
25	Simon Minovitsky	[12]
26	Bernard M. E. Moret	[17]
27	Burkhard Morgenstern	[3] [4] [5] [7]
28	Quaid Morris	[18]
29	Eugene W. Myers (Gene Myers)	[13]
30	Lior Pachter	[2]
31	Len A. Pennacchio	[8]
32	Alexander Poliakov	[2] [6] [12]
33	Gerald Quon	[18]
34	Igor Ratnere	[12]
35	Oliver Rinner	[4]
36	Edward M. Rubin	[2] [8]
37	Stephen M. Rumble	[14]
38	Jody R. Schwartz	[2]
39	Alexander Sczyrba	[4]
40	Nameeta Shah	[8]
41	Arend Sidow	[9]
42	Kerrin Small	[9]
43	Rasmus Steinkamp	[7]
44	Mukund Sundararajan	[9]
45	Leila Taher	[4]
46	Yee Whye Teh	[18]
47	Tandy Warnow	[17]
48	Vladimir Yanovski	[14]
49	Manfred Zorn	[1]

Colors in the list of coauthors