| 2008 |
|---|
| 58 | EE | Minoru Kanehisa:
KEGG for Medical and Pharmaceutical Applications.
APBC 2008: 5 |
| 57 | EE | Kosuke Hashimoto,
Ichigaku Takigawa,
Motoki Shiga,
Minoru Kanehisa,
Hiroshi Mamitsuka:
Mining significant tree patterns in carbohydrate sugar chains.
ECCB 2008: 167-173 |
| 56 | EE | Yoshihiro Yamanishi,
Michihiro Araki,
Alex Gutteridge,
Wataru Honda,
Minoru Kanehisa:
Prediction of drug-target interaction networks from the integration of chemical and genomic spaces.
ISMB 2008: 232-240 |
| 55 | EE | C. Nelson Hayes,
Diego Diez,
Nicolas Joannin,
Wataru Honda,
Minoru Kanehisa,
Mats Wahlgren,
Craig E. Wheelock,
Susumu Goto:
varDB: a pathogen-specific sequence database of protein families involved in antigenic variation.
Bioinformatics 24(21): 2564-2565 (2008) |
| 54 | EE | Shuichi Kawashima,
Piotr Pokarowski,
Maria Pokarowska,
Andrzej Kolinski,
Toshiaki Katayama,
Minoru Kanehisa:
AAindex: amino acid index database, progress report 2008.
Nucleic Acids Research 36(Database-Issue): 202-205 (2008) |
| 53 | EE | Minoru Kanehisa,
Michihiro Araki,
Susumu Goto,
Masahiro Hattori,
Mika Hirakawa,
Masumi Itoh,
Toshiaki Katayama,
Shuichi Kawashima,
Shujiro Okuda,
Toshiaki Tokimatsu,
Yoshihiro Yamanishi:
KEGG for linking genomes to life and the environment.
Nucleic Acids Research 36(Database-Issue): 480-484 (2008) |
| 52 | EE | Kosuke Hashimoto,
Kiyoko F. Aoki-Kinoshita,
Nobuhisa Ueda,
Minoru Kanehisa,
Hiroshi Mamitsuka:
A new efficient probabilistic model for mining labeled ordered trees applied to glycobiology.
TKDD 2(1): (2008) |
| 2007 |
|---|
| 51 | EE | Tetsuya Sato,
Yoshihiro Yamanishi,
Katsuhisa Horimoto,
Minoru Kanehisa,
Hiroyuki Toh:
Inference of Protein-Protein Interactions by Using Co-evolutionary Information.
AB 2007: 322-333 |
| 50 | EE | Vachiranee Limviphuvadh,
Seigo Tanaka,
Susumu Goto,
Kunihiro Ueda,
Minoru Kanehisa:
The commonality of protein interaction networks determined in neurodegenerative disorders (NDDs).
Bioinformatics 23(16): 2129-2138 (2007) |
| 49 | EE | Yuki Moriya,
Masumi Itoh,
Shujiro Okuda,
Akiyasu C. Yoshizawa,
Minoru Kanehisa:
KAAS: an automatic genome annotation and pathway reconstruction server.
Nucleic Acids Research 35(Web-Server-Issue): 182-185 (2007) |
| 48 | EE | Zhenjun Hu,
David M. Ng,
Takuji Yamada,
Chunnuan Chen,
Shuichi Kawashima,
Joe Mellor,
Bolan Linghu,
Minoru Kanehisa,
Joshua M. Stuart,
Charles DeLisi:
VisANT 3.0: new modules for pathway visualization, editing, prediction and construction.
Nucleic Acids Research 35(Web-Server-Issue): 625-632 (2007) |
| 2006 |
|---|
| 47 | EE | Kiyoko F. Aoki-Kinoshita,
Minoru Kanehisa,
Ming-Yang Kao,
Xiang-Yang Li,
Weizhao Wang:
A 6-Approximation Algorithm for Computing Smallest Common AoN-Supertree with Application to the Reconstruction of Glycan Trees.
ISAAC 2006: 100-110 |
| 46 | EE | Kiyoko F. Aoki-Kinoshita,
Nobuhisa Ueda,
Hiroshi Mamitsuka,
Minoru Kanehisa:
ProfilePSTMM: capturing tree-structure motifs in carbohydrate sugar chains.
ISMB (Supplement of Bioinformatics) 2006: 25-34 |
| 45 | EE | Jose C. Nacher,
Jean-Marc Schwartz,
Minoru Kanehisa,
Tatsuya Akutsu:
Identification of metabolic units induced by environmental signals.
ISMB (Supplement of Bioinformatics) 2006: 375-383 |
| 44 | EE | Kosuke Hashimoto,
Kiyoko F. Aoki-Kinoshita,
Nobuhisa Ueda,
Minoru Kanehisa,
Hiroshi Mamitsuka:
A new efficient probabilistic model for mining labeled ordered trees.
KDD 2006: 177-186 |
| 43 | EE | Takuji Yamada,
Minoru Kanehisa,
Susumu Goto:
Extraction of phylogenetic network modules from the metabolic network.
BMC Bioinformatics 7: 130 (2006) |
| 42 | EE | Jean-Marc Schwartz,
Minoru Kanehisa:
Quantitative elementary mode analysis of metabolic pathways: the example of yeast glycolysis.
BMC Bioinformatics 7: 186 (2006) |
| 41 | EE | Tetsuya Sato,
Yoshihiro Yamanishi,
Katsuhisa Horimoto,
Minoru Kanehisa,
Hiroyuki Toh:
Partial correlation coefficient between distance matrices as a new indicator of protein-protein interactions.
Bioinformatics 22(20): 2488-2492 (2006) |
| 40 | EE | Minoru Kanehisa,
Susumu Goto,
Masahiro Hattori,
Kiyoko F. Aoki-Kinoshita,
Masumi Itoh,
Shuichi Kawashima,
Toshiaki Katayama,
Michihiro Araki,
Mika Hirakawa:
From genomics to chemical genomics: new developments in KEGG.
Nucleic Acids Research 34(Database-Issue): 354-357 (2006) |
| 39 | EE | Shujiro Okuda,
Toshiaki Katayama,
Shuichi Kawashima,
Susumu Goto,
Minoru Kanehisa:
ODB: a database of operons accumulating known operons across multiple genomes.
Nucleic Acids Research 34(Database-Issue): 358-362 (2006) |
| 38 | EE | Ali Masoudi-Nejad,
Koichiro Tonomura,
Shuichi Kawashima,
Yuki Moriya,
Masanori Suzuki,
Masumi Itoh,
Minoru Kanehisa,
Takashi Endo,
Susumu Goto:
EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments.
Nucleic Acids Research 34(Web-Server-Issue): 459-462 (2006) |
| 2005 |
|---|
| 37 | EE | Jean-Marc Schwartz,
Minoru Kanehisa:
A quadratic programming approach for decomposing steady-state metabolic flux distributions onto elementary modes.
ECCB/JBI 2005: 205 |
| 36 | EE | Yoshihiro Yamanishi,
Jean-Philippe Vert,
Minoru Kanehisa:
Supervised enzyme network inference from the integration of genomic data and chemical information.
ISMB (Supplement of Bioinformatics) 2005: 468-477 |
| 35 | EE | Tetsuya Sato,
Yoshihiro Yamanishi,
Minoru Kanehisa,
Hiroyuki Toh:
The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships.
Bioinformatics 21(17): 3482-3489 (2005) |
| 34 | EE | Shin Kawano,
Kosuke Hashimoto,
Takashi Miyama,
Susumu Goto,
Minoru Kanehisa:
Prediction of glycan structures from gene expression data based on glycosyltransferase reactions.
Bioinformatics 21(21): 3976-3982 (2005) |
| 33 | EE | Masumi Itoh,
Susumu Goto,
Tatsuya Akutsu,
Minoru Kanehisa:
Fast and accurate database homology search using upper bounds of local alignment scores.
Bioinformatics 21(7): 912-921 (2005) |
| 32 | EE | Kiyoko F. Aoki,
Hiroshi Mamitsuka,
Tatsuya Akutsu,
Minoru Kanehisa:
A score matrix to reveal the hidden links in glycans.
Bioinformatics 21(8): 1457-1463 (2005) |
| 31 | EE | Yoshinori Tamada,
Hideo Bannai,
Seiya Imoto,
Toshiaki Katayama,
Minoru Kanehisa,
Satoru Miyano:
Utilizing Evolutionary Information and Gene Expression Data for Estimating Gene Networks with Bayesian Network Models.
J. Bioinformatics and Computational Biology 3(6): 1295-1314 (2005) |
| 2004 |
|---|
| 30 | EE | Yoshihiro Yamanishi,
Jean-Philippe Vert,
Minoru Kanehisa:
Protein network inference from multiple genomic data: a supervised approach.
ISMB/ECCB (Supplement of Bioinformatics) 2004: 363-370 |
| 29 | EE | Kiyoko F. Aoki,
Nobuhisa Ueda,
Atsuko Yamaguchi,
Minoru Kanehisa,
Tatsuya Akutsu,
Hiroshi Mamitsuka:
Application of a new probabilistic model for recognizing complex patterns in glycans.
ISMB/ECCB (Supplement of Bioinformatics) 2004: 6-14 |
| 28 | EE | Jose C. Nacher,
Nobuhisa Ueda,
Takuji Yamada,
Minoru Kanehisa,
Tatsuya Akutsu:
Clustering under the line graph transformation: application to reaction network.
BMC Bioinformatics 5: 207 (2004) |
| 27 | | Minoru Kanehisa,
Susumu Goto,
Shuichi Kawashima,
Yasushi Okuno,
Masahiro Hattori:
The KEGG resource for deciphering the genome.
Nucleic Acids Research 32(Database-Issue): 277-280 (2004) |
| 26 | | Kiyoko F. Aoki,
Atsuko Yamaguchi,
Nobuhisa Ueda,
Tatsuya Akutsu,
Hiroshi Mamitsuka,
Susumu Goto,
Minoru Kanehisa:
KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains.
Nucleic Acids Research 32(Web-Server-Issue): 267-272 (2004) |
| 25 | EE | Kiyoko F. Aoki,
Nobuhisa Ueda,
Atsuko Yamaguchi,
Tatsuya Akutsu,
Minoru Kanehisa,
Hiroshi Mamitsuka:
Managing and Analyzing Carbohydrate Data.
SIGMOD Record 33(2): 33-38 (2004) |
| 2003 |
|---|
| 24 | | Jean-Philippe Vert,
Minoru Kanehisa:
Extracting active pathways from gene expression data.
ECCB 2003: 238-244 |
| 23 | EE | Yoshihiro Yamanishi,
Jean-Philippe Vert,
A. Nakaya,
Minoru Kanehisa:
Extraction of correlated gene clusters from multiple genomic data by generalized kernel canonical correlation analysis.
ISMB (Supplement of Bioinformatics) 2003: 323-330 |
| 22 | | Keun-Joon Park,
Minoru Kanehisa:
Prediction of protein subcellular locations by support vector machines using compositions of amino acids and amino acid pairs.
Bioinformatics 19(13): 1656-1663 (2003) |
| 2002 |
|---|
| 21 | EE | Jean-Philippe Vert,
Minoru Kanehisa:
Graph-Driven Feature Extraction From Microarray Data Using Diffusion Kernels and Kernel CCA.
NIPS 2002: 1425-1432 |
| 20 | | Takeshi Kawashima,
Shuichi Kawashima,
Yuji Kohara,
Minoru Kanehisa,
Kazuhiro W. Makabe:
Update of MAGEST: Maboya Gene Expression patterns and Sequence Tags.
Nucleic Acids Research 30(1): 119-120 (2002) |
| 19 | | Susumu Goto,
Yasushi Okuno,
Masahiro Hattori,
Takaaki Nishioka,
Minoru Kanehisa:
LIGAND: database of chemical compounds and reactions in biological pathways.
Nucleic Acids Research 30(1): 402-404 (2002) |
| 18 | | Minoru Kanehisa,
Susumu Goto,
Shuichi Kawashima,
Akihiro Nakaya:
The KEGG databases at GenomeNet.
Nucleic Acids Research 30(1): 42-46 (2002) |
| 2000 |
|---|
| 17 | EE | Minoru Kanehisa:
Sequence comparison to graph comparison--a new generation of algorithms for network analysis of interacting molecules (abstract only).
RECOMB 2000: 176 |
| 16 | | Takeshi Kawashima,
Shuichi Kawashima,
Minoru Kanehisa,
Hiroki Nishida,
Kazuhiro W. Makabe:
MAGEST: MAboya Gene Expression patterns and Sequence Tags.
Nucleic Acids Research 28(1): 133-135 (2000) |
| 15 | | Minoru Kanehisa,
Susumu Goto:
KEGG: Kyoto Encyclopedia of Genes and Genomes.
Nucleic Acids Research 28(1): 27-30 (2000) |
| 14 | | Shuichi Kawashima,
Minoru Kanehisa:
AAindex: Amino Acid index database.
Nucleic Acids Research 28(1): 374 (2000) |
| 13 | | Susumu Goto,
Takaaki Nishioka,
Minoru Kanehisa:
LIGAND: chemical database of enzyme reactions.
Nucleic Acids Research 28(1): 380-382 (2000) |
| 1999 |
|---|
| 12 | | Kentaro Tomii,
Minoru Kanehisa:
Systematic Detection of Protein Structural Motifs.
Pattern Discovery in Biomolecular Data 1999: 97-110 |
| 11 | | Hiroyuki Ogata,
Susumu Goto,
Kazushige Sato,
Wataru Fujibuchi,
Hidemasa Bono,
Minoru Kanehisa:
KEGG: Kyoto Encyclopedia of Genes and Genomes.
Nucleic Acids Research 27(1): 29-34 (1999) |
| 10 | | Shuichi Kawashima,
Hiroyuki Ogata,
Minoru Kanehisa:
AAindex: Amino Acid Index Database.
Nucleic Acids Research 27(1): 368-369 (1999) |
| 9 | | Susumu Goto,
Takaaki Nishioka,
Minoru Kanehisa:
LIGAND database for enzymes, compounds and reactions.
Nucleic Acids Research 27(1): 377-379 (1999) |
| 1998 |
|---|
| 8 | | Susumu Goto,
Takaaki Nishioka,
Minoru Kanehisa:
LIGAND: chemical database for enzyme reactions.
Bioinformatics 14(7): 591-599 (1998) |
| 1994 |
|---|
| 7 | | Takahiko Suzuki,
Toshihisa Takagi,
Satoru Kuhara,
Minoru Kanehisa:
Development of an integrated Database for Genome Mapping and Nucleotide Sequences.
HICSS (5) 1994: 68-76 |
| 1993 |
|---|
| 6 | | Y. Matsuo,
Minoru Kanehisa:
An approach to systematic detection of protein structural motifs.
Computer Applications in the Biosciences 9(2): 153-159 (1993) |
| 5 | | Masato Ishikawa,
Tomoyuki Toya,
Masaki Hoshida,
Katsumi Nitta,
A. Ogiwara,
Minoru Kanehisa:
Multiple sequence alignment by parallel simulated annealing.
Computer Applications in the Biosciences 9(3): 267-273 (1993) |
| 1985 |
|---|
| 4 | | Christian Burks,
James W. Fickett,
W. B. Goad,
Minoru Kanehisa,
F. I. Lewitter,
W. P. Rindone,
C. D. Swindell,
C. S. Tung,
H. S. Bilofsky:
The GenBank nucleic acid sequence database.
Computer Applications in the Biosciences 1(4): 225-233 (1985) |
| 1984 |
|---|
| 3 | | Minoru Kanehisa,
James W. Fickett,
W. B. Goad:
A relational database system for the maintenance and verification of the Los Alamos sequence library.
Nucleic Acids Research 12(1): 149-158 (1984) |
| 2 | | Minoru Kanehisa:
Use of statistical criteria for screening potential homologies in nucleic acid sequences.
Nucleic Acids Research 12(1): 203-213 (1984) |
| 1 | | Minoru Kanehisa,
P. Klein,
P. Greif,
Charles DeLisi:
Computer analysis and structure prediction of nucleic acids and proteins.
Nucleic Acids Research 12(1): 417-428 (1984) |
