| 2009 |
| 12 | EE | Hisashi Kashima,
Satoshi Oyama,
Yoshihiro Yamanishi,
Koji Tsuda:
On Pairwise Kernels: An Efficient Alternative and Generalization Analysis.
PAKDD 2009: 1030-1037 |
| 2008 |
| 11 | EE | Yoshihiro Yamanishi,
Michihiro Araki,
Alex Gutteridge,
Wataru Honda,
Minoru Kanehisa:
Prediction of drug-target interaction networks from the integration of chemical and genomic spaces.
ISMB 2008: 232-240 |
| 10 | EE | Yoshihiro Yamanishi:
Supervised Bipartite Graph Inference.
NIPS 2008: 1841-1848 |
| 9 | EE | Minoru Kanehisa,
Michihiro Araki,
Susumu Goto,
Masahiro Hattori,
Mika Hirakawa,
Masumi Itoh,
Toshiaki Katayama,
Shuichi Kawashima,
Shujiro Okuda,
Toshiaki Tokimatsu,
Yoshihiro Yamanishi:
KEGG for linking genomes to life and the environment.
Nucleic Acids Research 36(Database-Issue): 480-484 (2008) |
| 2007 |
| 8 | EE | Tetsuya Sato,
Yoshihiro Yamanishi,
Katsuhisa Horimoto,
Minoru Kanehisa,
Hiroyuki Toh:
Inference of Protein-Protein Interactions by Using Co-evolutionary Information.
AB 2007: 322-333 |
| 7 | EE | Yoshihiro Yamanishi,
Francis Bach,
Jean-Philippe Vert:
Glycan classification with tree kernels.
Bioinformatics 23(10): 1211-1216 (2007) |
| 2006 |
| 6 | EE | Tetsuya Sato,
Yoshihiro Yamanishi,
Katsuhisa Horimoto,
Minoru Kanehisa,
Hiroyuki Toh:
Partial correlation coefficient between distance matrices as a new indicator of protein-protein interactions.
Bioinformatics 22(20): 2488-2492 (2006) |
| 2005 |
| 5 | EE | Yoshihiro Yamanishi,
Jean-Philippe Vert,
Minoru Kanehisa:
Supervised enzyme network inference from the integration of genomic data and chemical information.
ISMB (Supplement of Bioinformatics) 2005: 468-477 |
| 4 | EE | Tetsuya Sato,
Yoshihiro Yamanishi,
Minoru Kanehisa,
Hiroyuki Toh:
The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships.
Bioinformatics 21(17): 3482-3489 (2005) |
| 2004 |
| 3 | EE | Yoshihiro Yamanishi,
Jean-Philippe Vert,
Minoru Kanehisa:
Protein network inference from multiple genomic data: a supervised approach.
ISMB/ECCB (Supplement of Bioinformatics) 2004: 363-370 |
| 2 | EE | Jean-Philippe Vert,
Yoshihiro Yamanishi:
Supervised Graph Inference.
NIPS 2004 |
| 2003 |
| 1 | EE | Yoshihiro Yamanishi,
Jean-Philippe Vert,
A. Nakaya,
Minoru Kanehisa:
Extraction of correlated gene clusters from multiple genomic data by generalized kernel canonical correlation analysis.
ISMB (Supplement of Bioinformatics) 2003: 323-330 |