7. ECCB 2008:
Cagliari,
Italy (Supplement of Bioinformatics)
ECCB'08 Proceedings, Seventh European Conference on Computational Biology, 22-26 September 2008, Cagliari, Italy.
2008 BibTeX
Editorials
Databases
- Daniel Dalevi, Natalia Ivanova, Konstantinos Mavrommatis, Sean D. Hooper, Ernest Szeto, Philip Hugenholtz, Nikos Kyrpides, Victor M. Markowitz:
Annotation of metagenome short reads using proxygenes.
7-13
Electronic Edition (link) BibTeX
- Chia-Ying Yang, Chao-Hui Chang, Ya-Ling Yu, Tsu-Chun Emma Lin, Sheng-An Lee, Chueh-Chuan Yen, Jinn-Moon Yang, Jin-Mei Lai, Yi-Ren Hong, Tzu-Ling Tseng, Kun-Mao Chao, Chi-Ying F. Huang:
PhosphoPOINT: a comprehensive human kinase interactome and phospho-protein database.
14-20
Electronic Edition (link) BibTeX
- A. M. Willemsen, G. A. Jansen, J. C. Komen, S. van Hooff, H. R. Waterham, P. M. T. Brites, Ronald J. A. Wanders, Antoine H. C. van Kampen:
Organization and integration of biomedical knowledge with concept maps for key peroxisomal pathways.
21-27
Electronic Edition (link) BibTeX
Pathways/Interactions/Proteomics
- Jayesh Pandey, Mehmet Koyutürk, Shankar Subramaniam, Ananth Grama:
Functional coherence in domain interaction networks.
28-34
Electronic Edition (link) BibTeX
- Sven-Eric Schelhorn, Thomas Lengauer, Mario Albrecht:
An integrative approach for predicting interactions of protein regions.
35-41
Electronic Edition (link) BibTeX
- Lukas Käll, John D. Storey, William Stafford Noble:
Non-parametric estimation of posterior error probabilities associated with peptides identified by tandem mass spectrometry.
42-48
Electronic Edition (link) BibTeX
- Sebastian Böcker, Florian Rasche:
Towards de novo identification of metabolites by analyzing tandem mass spectra.
49-55
Electronic Edition (link) BibTeX
- Gabi Kastenmüller, Johann Gasteiger, Hans-Werner Mewes:
An environmental perspective on large-scale genome clustering based on metabolic capabilities.
56-62
Electronic Edition (link) BibTeX
Transcriptomics
- Elena Tsiporkova, Veselka Boeva:
Fusing time series expression data through hybrid aggregation and hierarchical merge.
63-69
Electronic Edition (link) BibTeX
- Pei Gao, Antti Honkela, Magnus Rattray, Neil D. Lawrence:
Gaussian process modelling of latent chemical species: applications to inferring transcription factor activities.
70-75
Electronic Edition (link) BibTeX
- Fantine Mordelet, Jean-Philippe Vert:
SIRENE: supervised inference of regulatory networks.
76-82
Electronic Edition (link) BibTeX
- Hubert Rehrauer, Susan Schönmann, Leo Eberl, Ralph Schlapbach:
PhyloDetect: a likelihood-based strategy for detecting microorganisms with diagnostic microarrays.
83-89
Electronic Edition (link) BibTeX
- Israel Steinfeld, Roy Navon, Diego Ardigò, Ivana Zavaroni, Zohar Yakhini:
Clinically driven semi-supervised class discovery in gene expression data.
90-97
Electronic Edition (link) BibTeX
Structural Bioinformatics
Text Mining
- Shi Yu, Steven Van Vooren, Léon-Charles Tranchevent, Bart De Moor, Yves Moreau:
Comparison of vocabularies, representations and ranking algorithms for gene prioritization by text mining.
119-125
Electronic Edition (link) BibTeX
- Jörg Hakenberg, Conrad Plake, Robert Leaman, Michael Schroeder, Graciela Gonzalez:
Inter-species normalization of gene mentions with GNAT.
126-132
Electronic Edition (link) BibTeX
- Crystal L. Kahn, Benjamin J. Raphael:
Analysis of segmental duplications via duplication distance.
133-138
Electronic Edition (link) BibTeX
Algorithms and Phylogeny
- Erez Ben-Yaacov, Yonina C. Eldar:
A fast and flexible method for the segmentation of aCGH data.
139-145
Electronic Edition (link) BibTeX
- Andrew Wei Xu, Benoît Alain, David Sankoff:
Poisson adjacency distributions in genome comparison: multichromosomal, circular, signed and unsigned cases.
146-152
Electronic Edition (link) BibTeX
- Vikas Bansal, Vineet Bafna:
HapCUT: an efficient and accurate algorithm for the haplotype assembly problem.
153-159
Electronic Edition (link) BibTeX
- Paulo G. S. da Fonseca, Katia S. Guimarães, Marie-France Sagot:
Efficient representation and P-value computation for high-order Markov motifs.
160-166
Electronic Edition (link) BibTeX
- Kosuke Hashimoto, Ichigaku Takigawa, Motoki Shiga, Minoru Kanehisa, Hiroshi Mamitsuka:
Mining significant tree patterns in carbohydrate sugar chains.
167-173
Electronic Edition (link) BibTeX
Genomes and Protein Analysis
- Fabio De Bona, Stephan Ossowski, Korbinian Schneeberger, Gunnar Rätsch:
Optimal spliced alignments of short sequence reads.
174-180
Electronic Edition (link) BibTeX
- Marie-Laure Martin-Magniette, Tristan Mary-Huard, Caroline Bérard, Stéphane Robin:
ChIPmix: mixture model of regressions for two-color ChIP-chip analysis.
181-186
Electronic Edition (link) BibTeX
- Tobias Rausch, Anne-Katrin Emde, David Weese, Andreas Döring, Cédric Notredame, Knut Reinert:
Segment-based multiple sequence alignment.
187-192
Electronic Edition (link) BibTeX
- Yaniv Loewenstein, Michal Linial:
Connect the dots: exposing hidden protein family connections from the entire sequence tree.
193-199
Electronic Edition (link) BibTeX
- Nir Yosef, Roded Sharan, William Stafford Noble:
Improved network-based identification of protein orthologs.
200-206
Electronic Edition (link) BibTeX
- Yana Bromberg, Burkhard Rost:
Comprehensive in silico mutagenesis highlights functionally important residues in proteins.
207-212
Electronic Edition (link) BibTeX
Systems Biology
- Julio Saez-Rodriguez, Stefan Gayer, Martin Ginkel, Ernst Dieter Gilles:
Automatic decomposition of kinetic models of signaling networks minimizing the retroactivity among modules.
213-219
Electronic Edition (link) BibTeX
- Elisabeth Remy, Paul Ruet:
From minimal signed circuits to the dynamics of Boolean regulatory networks.
220-226
Electronic Edition (link) BibTeX
- Pedro T. Monteiro, Delphine Ropers, Radu Mateescu, Ana T. Freitas, Hidde de Jong:
Temporal logic patterns for querying dynamic models of cellular interaction networks.
227-233
Electronic Edition (link) BibTeX
- Aitor Gonzalez, Claudine Chaouiya, Denis Thieffry:
Logical modelling of the role of the Hh pathway in the patterning of the Drosophila wing disc.
234-240
Electronic Edition (link) BibTeX
Bioinformatics for Diseases
Copyright © Sat May 16 23:07:55 2009
by Michael Ley (ley@uni-trier.de)
