Janet M. Thornton

2008
39	EE	Rafael Najmanovich, Natalja Kurbatova, Janet M. Thornton: Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites. ECCB 2008: 105-111
38	EE	Matthew Bashton, Irene Nobeli, Janet M. Thornton: PROCOGNATE: a cognate ligand domain mapping for enzymes. Nucleic Acids Research 36(Database-Issue): 618-622 (2008)
2007
37	EE	Rafael Najmanovich, Abdellah Allali-Hassani, Richard J. Morris, Ludmila Dombrovsky, Patricia W. Pan, Masoud Vedadi, Alexander N. Plotnikov, Aled M. Edwards, Cheryl H. Arrowsmith, Janet M. Thornton: Analysis of binding site similarity, small-molecule similarity and experimental binding profiles in the human cytosolic sulfotransferase family. Bioinformatics 23(2): 104-109 (2007)
36	EE	Lesley H. Greene, Tony E. Lewis, Sarah Addou, Alison Cuff, Timothy Dallman, Mark Dibley, Oliver Redfern, Frances M. G. Pearl, Rekha Nambudiry, Adam Reid, Ian Sillitoe, Corin Yeats, Janet M. Thornton, Christine A. Orengo: The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution. Nucleic Acids Research 35(Database-Issue): 291-297 (2007)
35	EE	Gemma L. Holliday, Daniel E. Almonacid, Gail J. Bartlett, Noel M. O'Boyle, James W. Torrance, Peter Murray-Rust, John B. O. Mitchell, Janet M. Thornton: MACiE (Mechanism, Annotation and Classification in Enzymes): novel tools for searching catalytic mechanisms. Nucleic Acids Research 35(Database-Issue): 515-520 (2007)
2005
34	EE	Richard J. Morris, Rafael Najmanovich, Abdullah Kahraman, Janet M. Thornton: Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons. Bioinformatics 21(10): 2347-2355 (2005)
33	EE	Carles Ferrer-Costa, H. P. Shanahan, Susan Jones, Janet M. Thornton: HTHquery: a method for detecting DNA-binding proteins with a helix-turn-helix structural motif. Bioinformatics 21(18): 3679-3680 (2005)
32	EE	Gemma L. Holliday, Gail J. Bartlett, Daniel E. Almonacid, Noel M. O'Boyle, Peter Murray-Rust, Janet M. Thornton, John B. O. Mitchell: MACiE: a database of enzyme reaction mechanisms. Bioinformatics 21(23): 4315-4316 (2005)
31	EE	Frances M. G. Pearl, Annabel E. Todd, Ian Sillitoe, Mark Dibley, Oliver Redfern, Tony E. Lewis, Christopher Bennett, Russell L. Marsden, Alastair Grant, David Lee, Adrian Akpor, Michael Maibaum, Andrew P. Harrison, Timothy Dallman, Gabrielle A. Reeves, Ilhem Diboun, Sarah Addou, Stefano Lise, Caroline Johnston, Antonio Sillero, Janet M. Thornton, Christine A. Orengo: The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis. Nucleic Acids Research 33(Database-Issue): 247-251 (2005)
30	EE	Roman A. Laskowski, Victor V. Chistyakov, Janet M. Thornton: PDBsum more: new summaries and analyses of the known 3D structures of proteins and nucleic acids. Nucleic Acids Research 33(Database-Issue): 266-268 (2005)
29	EE	Catherine Brooksbank, Graham Cameron, Janet M. Thornton: The European Bioinformatics Institute's data resources: towards systems biology. Nucleic Acids Research 33(Database-Issue): 46-53 (2005)
28	EE	Roman A. Laskowski, James D. Watson, Janet M. Thornton: ProFunc: a server for predicting protein function from 3D structure. Nucleic Acids Research 33(Web-Server-Issue): 89-93 (2005)
2004
27	EE	Jonathan A. Barker, Janet M. Thornton: Software Engineering Challenges in Bioinformatics. ICSE 2004: 12-15
26	EE	Janet M. Thornton, David Gilbert, Catherine Brooksbank: ISMB/ECCB 2004. ISMB/ECCB (Supplement of Bioinformatics) 2004: 1-2
25	EE	Richard A. George, Ruth V. Spriggs, Janet M. Thornton, Bissan Al-Lazikani, Mark B. Swindells: SCOPEC: a database of protein catalytic domains. ISMB/ECCB (Supplement of Bioinformatics) 2004: 130-136
24	EE	Janet M. Thornton, David Gilbert, Catherine Brooksbank: ISMB/ECCB 2004 Organization. ISMB/ECCB (Supplement of Bioinformatics) 2004: 3-5
23		Juan Garcia Ranea, Alastair Grant, Janet M. Thornton, Christine A. Orengo: Microeconomic Principles Explain an Optimal Genome Size in Bacteria. Spanish Bioinformatics Conference 2004: 43
22	EE	H. P. Shanahan, Janet M. Thornton: An examination of the conservation of surface patch polarity for proteins. Bioinformatics 20(14): 2197-2204 (2004)
21	EE	James E. Bray, Russell L. Marsden, Stuart C. G. Rison, Alexei Savchenko, Aled M. Edwards, Janet M. Thornton, Christine A. Orengo: A practical and robust sequence search strategy for structural genomics target selection. Bioinformatics 20(14): 2288-2295 (2004)
20		Craig T. Porter, Gail J. Bartlett, Janet M. Thornton: The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data. Nucleic Acids Research 32(Database-Issue): 129-133 (2004)
2003
19		Janet M. Thornton: The proteome and the metabolome. ECCB 2003: 237
18		Jonathan A. Barker, Janet M. Thornton: An algorithm for constraint-based structural template matching: application to 3D templates with statistical analysis. Bioinformatics 19(13): 1644-1649 (2003)
17		Andrew P. Harrison, Frances M. G. Pearl, Ian Sillitoe, Tim Slidel, Richard Mott, Janet M. Thornton, Christine A. Orengo: Recognizing the fold of a protein structure. Bioinformatics 19(14): 1748-1759 (2003)
16		Frances M. G. Pearl, C. F. Bennett, James E. Bray, Andrew P. Harrison, Nigel J. Martin, Adrian J. Shepherd, Ian Sillitoe, Janet M. Thornton, Christine A. Orengo: The CATH database: an extended protein family resource for structural and functional genomics. Nucleic Acids Research 31(1): 452-455 (2003)
15		Daniel W. A. Buchan, Stuart C. G. Rison, James E. Bray, David Lee, Frances M. G. Pearl, Janet M. Thornton, Christine A. Orengo: Gene3D: structural assignments for the biologist and bioinformaticist alike. Nucleic Acids Research 31(1): 469-473 (2003)
2002
14	EE	David Gilbert, David R. Westhead, Juris Viksna, Janet M. Thornton: A Computer System to Perform Structure Comparison using Representations of Protein Structure. Computers & Chemistry 26(1): 23-30 (2002)
2001
13	EE	Irene Nobeli, John B. O. Mitchell, Alexander Alex, Janet M. Thornton: Evaluation of a knowledge-based potential of mean force for scoring docked protein-ligand complexes. Journal of Computational Chemistry 22(7): 673-688 (2001)
12		Frances M. G. Pearl, Nigel J. Martin, James E. Bray, Daniel W. A. Buchan, Andrew P. Harrison, David Lee, Gabrielle A. Reeves, Adrian J. Shepherd, Ian Sillitoe, Annabel E. Todd, Janet M. Thornton, Christine A. Orengo: A rapid classification protocol for the CATH Domain Database to support structural genomics. Nucleic Acids Research 29(1): 223-227 (2001)
11		Nicholas M. Luscombe, Roman A. Laskowski, Janet M. Thornton: Amino acid?base interactions: a three-dimensional analysis of protein?DNA interactions at an atomic level. Nucleic Acids Research 29(13): 2860-2874 (2001)
2000
10		David Gilbert, David R. Westhead, Janet M. Thornton, Karine Yvon: Une technique déclarative pour filtrer des motifs topologiques de protéines. JFPLC 2000: 165-
9		Frances M. G. Pearl, David Lee, James E. Bray, Ian Sillitoe, Annabel E. Todd, Andrew P. Harrison, Janet M. Thornton, Christine A. Orengo: Assigning genomic sequences to CATH. Nucleic Acids Research 28(1): 277-282 (2000)
1999
8		David Gilbert, David R. Westhead, N. Nagano, Janet M. Thornton: Motif-based searching in TOPS protein topology databases. Bioinformatics 15(4): 317-326 (1999)
7	EE	John B. O. Mitchell, Roman A. Laskowski, Alexander Alex, Janet M. Thornton: BLEEP - potential of mean force describing protein-ligand interactions: I. Generating potential. Journal of Computational Chemistry 20(11): 1165-1176 (1999)
6	EE	John B. O. Mitchell, Roman A. Laskowski, Alexander Alex, Mark J. Forster, Janet M. Thornton: BLEEP - potential of mean force describing protein-ligand interactions: II. Calculation of binding energies and comparison with experimental data. Journal of Computational Chemistry 20(11): 1177-1185 (1999)
5		Christine A. Orengo, Frances M. G. Pearl, James E. Bray, Annabel E. Todd, A. C. Martin, Loredana Lo Conte, Janet M. Thornton: The CATH Database provides insights into protein structure/function relationships. Nucleic Acids Research 27(1): 275-279 (1999)
1998
4		Janet M. Thornton, Andrew C. R. Martin, Christine A. Orengo, Duncan Milburn, Roman A. Laskowski: [Invited Lecture] Protein Folds and Functions. German Conference on Bioinformatics 1998
3	EE	Fabio Zuccotto, Andrew C. R. Martin, Roman A. Laskowski, Janet M. Thornton, Ian H. Gilbert: Dihydrofolate reductase: A potential drug target in trypanosomes and leishmania. Journal of Computer-Aided Molecular Design 12(3): 241-257 (1998)
1993
2		David T. Jones, Janet M. Thornton: Protein fold recognition. Journal of Computer-Aided Molecular Design 7(4): 439-456 (1993)
1992
1		David T. Jones, William R. Taylor, Janet M. Thornton: The rapid generation of mutation data matrices from protein sequences. Computer Applications in the Biosciences 8(3): 275-282 (1992)

Coauthor Index

1	Sarah Addou	[31] [36]
2	Adrian Akpor	[31]
3	Bissan Al-Lazikani	[25]
4	Alexander Alex	[6] [7] [13]
5	Abdellah Allali-Hassani	[37]
6	Daniel E. Almonacid	[32] [35]
7	Cheryl H. Arrowsmith	[37]
8	Jonathan A. Barker	[18] [27]
9	Gail J. Bartlett	[20] [32] [35]
10	Matthew Bashton	[38]
11	C. F. Bennett	[16]
12	Christopher Bennett	[31]
13	James E. Bray	[5] [9] [12] [15] [16] [21]
14	Catherine Brooksbank	[24] [26] [29]
15	Daniel W. A. Buchan	[12] [15]
16	Graham Cameron	[29]
17	Victor V. Chistyakov	[30]
18	Loredana Lo Conte	[5]
19	Alison Cuff	[36]
20	Timothy Dallman	[31] [36]
21	Mark Dibley	[31] [36]
22	Ilhem Diboun	[31]
23	Ludmila Dombrovsky	[37]
24	Aled M. Edwards	[21] [37]
25	Carles Ferrer-Costa	[33]
26	Mark J. Forster	[6]
27	Richard A. George	[25]
28	David Gilbert (David R. Gilbert)	[8] [10] [14] [24] [26]
29	Ian H. Gilbert	[3]
30	Alastair Grant	[23] [31]
31	Lesley H. Greene	[36]
32	Andrew P. Harrison	[9] [12] [16] [17] [31]
33	Gemma L. Holliday	[32] [35]
34	Caroline Johnston	[31]
35	David T. Jones	[1] [2]
36	Susan Jones	[33]
37	Abdullah Kahraman	[34]
38	Natalja Kurbatova	[39]
39	Roman A. Laskowski	[3] [4] [6] [7] [11] [28] [30]
40	David Lee	[9] [12] [15] [31]
41	Tony E. Lewis	[31] [36]
42	Stefano Lise	[31]
43	Nicholas M. Luscombe	[11]
44	Michael Maibaum	[31]
45	Russell L. Marsden	[21] [31]
46	A. C. Martin	[5]
47	Andrew C. R. Martin	[3] [4]
48	Nigel J. Martin	[12] [16]
49	Duncan Milburn	[4]
50	John B. O. Mitchell	[6] [7] [13] [32] [35]
51	Richard J. Morris	[34] [37]
52	Richard Mott	[17]
53	Peter Murray-Rust	[32] [35]
54	N. Nagano	[8]
55	Rafael Najmanovich	[34] [37] [39]
56	Rekha Nambudiry	[36]
57	Irene Nobeli	[13] [38]
58	Noel M. O'Boyle	[32] [35]
59	Christine A. Orengo	[4] [5] [9] [12] [15] [16] [17] [21] [23] [31] [36]
60	Patricia W. Pan	[37]
61	Frances M. G. Pearl	[5] [9] [12] [15] [16] [17] [31] [36]
62	Alexander N. Plotnikov	[37]
63	Craig T. Porter	[20]
64	Juan Garcia Ranea	[23]
65	Oliver Redfern	[31] [36]
66	Gabrielle A. Reeves	[12] [31]
67	Adam Reid	[36]
68	Stuart C. G. Rison	[15] [21]
69	Alexei Savchenko	[21]
70	H. P. Shanahan	[22] [33]
71	Adrian J. Shepherd	[12] [16]
72	Antonio Sillero	[31]
73	Ian Sillitoe	[9] [12] [16] [17] [31] [36]
74	Tim Slidel	[17]
75	Ruth V. Spriggs	[25]
76	Mark B. Swindells	[25]
77	William R. Taylor	[1]
78	Annabel E. Todd	[5] [9] [12] [31]
79	James W. Torrance	[35]
80	Masoud Vedadi	[37]
81	Juris Viksna	[14]
82	James D. Watson	[28]
83	David R. Westhead	[8] [10] [14]
84	Corin Yeats	[36]
85	Karine Yvon	[10]
86	Fabio Zuccotto	[3]

Colors in the list of coauthors